Wall clock time and date at job start Tue Mar 31 2020 01:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 13 13 O 1.21282 * 120.00041 * 239.99948 * 12 2 1 14 14 N 1.34779 * 120.00037 * 60.00381 * 12 2 1 15 15 C 1.46500 * 120.00169 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.46886 * 34.99624 * 15 14 12 17 17 C 1.50697 * 109.46979 * 275.00126 * 15 14 12 18 18 O 1.20821 * 120.00280 * 359.97438 * 17 15 14 19 19 O 1.34237 * 119.99899 * 180.02562 * 17 15 14 20 20 C 1.50698 * 109.47308 * 154.99673 * 15 14 12 21 21 C 1.38671 * 120.41804 * 220.00124 * 20 15 14 22 22 C 1.38631 * 118.42007 * 180.02562 * 21 20 15 23 23 C 1.38226 * 119.16164 * 359.97438 * 22 21 20 24 24 N 1.31864 * 120.76285 * 359.97438 * 23 22 21 25 25 C 1.31884 * 121.72381 * 359.70509 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 30 30 H 0.96996 * 119.99844 * 359.97438 * 14 12 2 31 31 H 0.96696 * 117.00194 * 179.97438 * 19 17 15 32 32 H 1.08000 * 120.79305 * 359.97438 * 21 20 15 33 33 H 1.07995 * 120.42395 * 180.02562 * 22 21 20 34 34 H 1.08001 * 119.62264 * 179.97438 * 23 22 21 35 35 H 1.07999 * 119.62012 * 180.30803 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.1946 -0.9409 -3.6507 16 1 2.2308 -2.0137 -3.4612 17 6 3.5763 -0.4438 -3.9896 18 8 4.0996 0.4013 -3.3028 19 8 4.2252 -0.9391 -5.0552 20 6 1.2647 -0.6657 -4.8042 21 6 0.9390 -1.6735 -5.6993 22 6 0.0801 -1.3744 -6.7457 23 6 -0.4198 -0.0909 -6.8608 24 7 -0.0890 0.8424 -5.9901 25 6 0.7201 0.5922 -4.9791 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7082 1.1609 3.4844 30 1 1.1488 0.5385 -2.5436 31 1 5.1089 -0.5891 -5.2327 32 1 1.3453 -2.6676 -5.5846 33 1 -0.1955 -2.1348 -7.4613 34 1 -1.0892 0.1504 -7.6734 35 1 0.9645 1.3810 -4.2831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059127.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:02 Heat of formation + Delta-G solvation = -115.976289 kcal Electronic energy + Delta-G solvation = -21454.710567 eV Core-core repulsion = 18030.804110 eV Total energy + Delta-G solvation = -3423.906456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.11165 -40.80854 -40.33980 -37.26878 -36.38234 -35.80264 -33.70038 -32.82817 -31.88647 -28.80057 -27.20573 -24.99371 -24.43662 -24.17103 -22.23575 -21.21971 -19.34026 -18.63527 -18.34663 -18.08005 -17.65988 -17.44860 -16.88369 -16.55813 -16.29957 -15.77495 -15.33513 -14.95494 -14.84558 -14.51004 -14.19559 -14.03023 -13.85730 -13.46177 -12.99724 -12.86815 -12.70942 -12.64078 -12.59155 -12.24395 -12.07229 -12.03838 -11.05832 -10.89106 -10.69282 -10.49256 -10.44645 -10.35851 -10.06988 -8.15781 -6.26554 -0.03791 0.27177 1.03414 1.39721 1.41451 1.49576 1.55702 1.95328 2.34055 2.47170 2.86475 3.13922 3.16096 3.57300 3.73101 3.93640 4.06039 4.18101 4.20715 4.40570 4.55956 4.72985 4.74300 4.92055 4.99276 5.10075 5.16296 5.24879 5.46092 5.47884 5.67855 5.73136 5.90664 6.16679 6.51552 6.81839 6.84548 6.93334 7.29505 7.43129 8.90470 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.004622 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.286837 B = 6056.497425 C = 6628.584065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.025 3.975 3 H 0.039 0.961 4 C -0.528 4.528 5 H 0.050 0.950 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.958 3.042 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.272 1.272 12 C 0.534 3.466 13 O -0.575 6.575 14 N -0.709 5.709 15 C 0.206 3.794 16 H 0.133 0.867 17 C 0.472 3.528 18 O -0.537 6.537 19 O -0.500 6.500 20 C -0.153 4.153 21 C -0.048 4.048 22 C -0.157 4.157 23 C 0.098 3.902 24 N -0.505 5.505 25 C 0.099 3.901 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.265 0.735 30 H 0.413 0.587 31 H 0.428 0.572 32 H 0.163 0.837 33 H 0.178 0.822 34 H 0.189 0.811 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 -3.571 -21.703 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.004 3.996 3 H 0.056 0.944 4 C -0.567 4.567 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.202 1.202 11 H -0.197 1.197 12 C 0.324 3.676 13 O -0.453 6.453 14 N -0.364 5.364 15 C 0.098 3.902 16 H 0.151 0.849 17 C 0.313 3.687 18 O -0.426 6.426 19 O -0.313 6.313 20 C -0.156 4.156 21 C -0.074 4.074 22 C -0.176 4.176 23 C -0.058 4.058 24 N -0.214 5.214 25 C -0.058 4.058 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.251 0.749 31 H 0.289 0.711 32 H 0.180 0.820 33 H 0.196 0.804 34 H 0.205 0.795 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.911 -3.231 -21.315 21.754 hybrid contribution 1.324 -0.329 1.173 1.799 sum -1.588 -3.560 -20.142 20.516 Atomic orbital electron populations 1.21561 0.94564 0.99822 1.01776 1.18823 0.95681 0.95835 0.89273 0.94366 1.21293 1.31666 1.12779 0.90944 0.93127 1.25615 0.95160 0.95742 1.01494 1.69960 1.37168 1.23576 1.24306 0.85511 0.78371 0.78533 0.79271 1.20333 1.20189 1.19695 1.21632 0.77457 0.83395 0.85105 1.90509 1.39132 1.28431 1.87204 1.45902 1.53842 1.33033 1.03595 1.19004 0.86249 1.00132 0.84832 0.84938 1.24072 0.88860 0.78477 0.77311 1.90753 1.68517 1.32460 1.50853 1.84446 1.36404 1.65355 1.45060 1.20307 1.00920 0.96982 0.97349 1.21814 0.94154 0.99435 0.91989 1.22553 0.97166 0.98944 0.98941 1.23521 0.96453 0.89289 0.96571 1.67781 1.13013 1.36944 1.03616 1.22572 0.92952 0.95078 0.95213 0.93120 0.90968 0.95199 0.92566 0.74899 0.71052 0.81966 0.80436 0.79456 0.83389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.87 71.98 0.64 -4.81 16 2 C 0.02 1.29 2.64 -12.29 -0.03 1.25 16 3 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.53 -31.01 8.37 25.60 0.21 -30.79 16 5 H 0.05 3.16 6.75 -2.91 -0.02 3.14 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -51.75 11.32 21.45 0.24 -51.51 16 8 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 9 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 C 0.53 24.83 6.98 87.66 0.61 25.44 16 13 O -0.57 -30.30 15.12 -3.04 -0.05 -30.35 16 14 N -0.71 -24.85 4.45 -449.69 -2.00 -26.85 16 15 C 0.21 5.93 2.70 43.50 0.12 6.04 16 16 H 0.13 3.83 7.47 -2.39 -0.02 3.81 16 17 C 0.47 14.33 7.65 71.24 0.54 14.87 16 18 O -0.54 -20.92 17.08 21.98 0.38 -20.55 16 19 O -0.50 -10.58 13.34 -51.48 -0.69 -11.27 16 20 C -0.15 -3.39 4.89 -19.77 -0.10 -3.49 16 21 C -0.05 -0.77 9.82 22.47 0.22 -0.54 16 22 C -0.16 -1.87 10.11 22.36 0.23 -1.65 16 23 C 0.10 1.48 11.18 84.69 0.95 2.43 16 24 N -0.50 -11.22 10.36 -195.83 -2.03 -13.25 16 25 C 0.10 2.31 10.23 84.67 0.87 3.18 16 26 H 0.05 1.87 7.56 -2.39 -0.02 1.86 16 27 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 28 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.41 12.75 6.29 -92.71 -0.58 12.17 16 31 H 0.43 5.51 9.10 -74.06 -0.67 4.83 16 32 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.15 3.50 6.90 -2.91 -0.02 3.48 16 Total: -1.00 -77.76 310.20 2.48 -75.28 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -0.11 Total: 17.63 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 4.71 Total: 13.46 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -3.79 Total: -91.61 kcal Atomic # 8 Polarization: -61.80 SS G_CDS: -0.36 Total: -62.16 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -77.76 2.48 -75.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059127.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.693 kcal (2) G-P(sol) polarization free energy of solvation -77.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds