Wall clock time and date at job start Tue Mar 31 2020 00:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46884 * 2 1 4 4 C 1.50700 * 109.46976 * 184.99419 * 3 2 1 5 5 O 1.20824 * 119.99977 * 0.02562 * 4 3 2 6 6 O 1.34229 * 120.00240 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47572 * 239.99933 * 2 1 3 8 8 C 1.34778 * 120.00013 * 60.00027 * 7 2 1 9 9 O 1.21688 * 119.99913 * 359.97438 * 8 7 2 10 10 C 1.46372 * 120.00079 * 180.02562 * 8 7 2 11 11 H 1.08004 * 119.99613 * 359.97438 * 10 8 7 12 12 C 1.40046 * 120.00244 * 180.02562 * 10 8 7 13 13 N 1.30674 * 119.99693 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00226 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46944 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.46908 * 119.99578 * 14 12 10 17 17 H 1.48493 * 109.47077 * 239.99767 * 14 12 10 18 18 C 1.50696 * 109.46976 * 119.99385 * 2 1 3 19 19 C 1.38678 * 120.41768 * 89.98442 * 18 2 1 20 20 C 1.38627 * 118.42399 * 180.02562 * 19 18 2 21 21 C 1.38220 * 119.16050 * 0.02562 * 20 19 18 22 22 N 1.31860 * 120.76284 * 359.97438 * 21 20 19 23 23 C 1.31884 * 121.72590 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47561 * 300.00062 * 1 2 3 25 25 H 1.09004 * 109.46814 * 60.00359 * 1 2 3 26 26 H 1.08998 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47102 * 304.99620 * 3 2 1 28 28 H 1.08996 * 109.47079 * 64.99854 * 3 2 1 29 29 H 0.96695 * 117.00652 * 180.02562 * 6 4 3 30 30 H 0.96999 * 119.99866 * 239.99876 * 7 2 1 31 31 H 0.96998 * 119.99704 * 180.02562 * 13 12 10 32 32 H 1.08007 * 120.78855 * 359.97438 * 19 18 2 33 33 H 1.08000 * 120.41839 * 180.02562 * 20 19 18 34 34 H 1.07999 * 119.62072 * 180.02562 * 21 20 19 35 35 H 1.07995 * 119.61420 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5419 1.4444 -0.1237 5 8 4.1427 0.3992 -0.2041 6 8 4.2121 2.6072 -0.1456 7 7 2.0184 -0.6906 -1.1961 8 6 1.6929 -0.2302 -2.4203 9 8 0.9929 0.7589 -2.5320 10 6 2.1804 -0.9205 -3.6154 11 1 2.8014 -1.7986 -3.5162 12 6 1.8427 -0.4418 -4.8874 13 7 1.0918 0.6210 -5.0073 14 14 2.4655 -1.3223 -6.4126 15 1 3.2904 -2.4890 -6.0083 16 1 1.3105 -1.7886 -7.2212 17 1 3.2909 -0.3891 -7.2205 18 6 2.0323 -0.7103 1.2305 19 6 2.2660 -2.0770 1.2061 20 6 2.7273 -2.6883 2.3616 21 6 2.9369 -1.9208 3.4919 22 7 2.7039 -0.6230 3.4787 23 6 2.2648 -0.0082 2.3977 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6053 1.9816 -0.8418 28 1 1.7515 1.9299 0.9313 29 1 5.1744 2.5578 -0.2267 30 1 2.5761 -1.4792 -1.1071 31 1 0.8575 0.9523 -5.8883 32 1 2.0920 -2.6517 0.3083 33 1 2.9203 -3.7507 2.3785 34 1 3.2966 -2.3893 4.3961 35 1 2.0849 1.0563 2.4251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604077621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:42 Heat of formation + Delta-G solvation = -86.122748 kcal Electronic energy + Delta-G solvation = -22347.492042 eV Core-core repulsion = 18924.880132 eV Total energy + Delta-G solvation = -3422.611910 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70505 -39.43099 -37.83638 -35.68638 -34.90255 -32.50431 -32.14502 -30.97305 -29.79449 -28.01302 -26.14158 -23.86387 -23.35997 -21.73046 -20.60732 -18.65016 -17.92052 -17.57222 -16.81064 -16.18507 -15.95148 -15.43348 -15.17898 -14.98991 -14.15414 -13.89555 -13.83419 -13.36570 -13.01550 -12.86667 -12.54221 -12.29238 -12.21973 -11.73819 -11.55789 -11.30940 -11.09206 -10.99590 -10.93092 -10.64813 -10.47843 -10.21366 -9.99696 -9.60276 -9.35067 -8.90481 -8.81284 -7.58055 -7.57183 -6.22946 -4.67559 1.24986 1.45572 2.78506 3.09993 3.19079 3.23305 3.51560 3.94339 4.07632 4.49011 4.51490 4.65675 4.86223 4.95509 5.13418 5.15298 5.32558 5.55893 5.64159 5.73314 5.80989 5.86651 6.05110 6.15241 6.25683 6.31066 6.34025 6.59426 6.80282 6.94750 6.95525 7.40260 7.86423 8.04070 8.07354 8.29980 8.40331 8.99287 9.47549 10.53637 10.71987 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021878 B = 0.005930 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.532020 B = 4720.403355 C = 5087.232101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.244 3.756 3 C -0.128 4.128 4 C 0.483 3.517 5 O -0.501 6.501 6 O -0.525 6.525 7 N -0.747 5.747 8 C 0.559 3.441 9 O -0.579 6.579 10 C -0.541 4.541 11 H 0.066 0.934 12 C 0.089 3.911 13 N -0.766 5.766 14 Si 0.905 3.095 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.106 4.106 19 C -0.063 4.063 20 C -0.168 4.168 21 C 0.082 3.918 22 N -0.483 5.483 23 C 0.092 3.908 24 H 0.050 0.950 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.137 0.863 28 H 0.096 0.904 29 H 0.401 0.599 30 H 0.385 0.615 31 H 0.267 0.733 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.151 0.849 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 -2.378 11.688 12.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.155 3.845 3 C -0.166 4.166 4 C 0.325 3.675 5 O -0.387 6.387 6 O -0.336 6.336 7 N -0.403 5.403 8 C 0.364 3.636 9 O -0.463 6.463 10 C -0.578 4.578 11 H 0.084 0.916 12 C -0.130 4.130 13 N -0.395 5.395 14 Si 0.730 3.270 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.108 4.108 19 C -0.089 4.089 20 C -0.188 4.188 21 C -0.075 4.075 22 N -0.191 5.191 23 C -0.065 4.065 24 H 0.069 0.931 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.155 0.845 28 H 0.114 0.886 29 H 0.259 0.741 30 H 0.218 0.782 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.781 -1.320 12.253 12.452 hybrid contribution 1.233 -1.388 -1.607 2.455 sum 3.014 -2.708 10.647 11.391 Atomic orbital electron populations 1.22209 0.93099 1.02491 1.03451 1.18442 0.93701 0.88565 0.83821 1.22044 0.87783 1.00559 1.06249 1.23389 0.91543 0.80761 0.71844 1.90663 1.70188 1.33090 1.44756 1.84543 1.26395 1.36811 1.85880 1.46272 1.57068 1.33031 1.03948 1.18138 0.80018 0.84217 0.81244 1.90512 1.41772 1.28299 1.85714 1.20904 1.33667 1.13725 0.89536 0.91567 1.25666 0.93342 0.94111 0.99926 1.70010 1.26992 1.18500 1.23980 0.86356 0.79122 0.80070 0.81480 1.18828 1.20143 1.20211 1.20999 0.98446 0.94940 0.96402 1.21432 0.94903 0.94243 0.98341 1.22092 1.01219 1.01321 0.94129 1.22646 0.97192 0.89780 0.97914 1.67646 1.11466 1.11073 1.28956 1.22584 0.95790 1.00062 0.88105 0.93104 0.88537 0.92593 0.84487 0.88578 0.74105 0.78172 0.92194 0.84513 0.84990 0.83208 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.38 37.16 0.31 -2.38 16 2 C 0.24 4.39 0.51 -132.97 -0.07 4.32 16 3 C -0.13 -2.26 4.16 -27.88 -0.12 -2.37 16 4 C 0.48 8.90 7.57 36.01 0.27 9.17 16 5 O -0.50 -10.26 14.77 -18.75 -0.28 -10.54 16 6 O -0.52 -8.19 13.42 -39.26 -0.53 -8.72 16 7 N -0.75 -16.00 3.34 -50.08 -0.17 -16.17 16 8 C 0.56 14.80 7.17 -12.99 -0.09 14.71 16 9 O -0.58 -16.64 11.28 5.20 0.06 -16.58 16 10 C -0.54 -14.90 9.54 -35.63 -0.34 -15.24 16 11 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 12 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 13 N -0.77 -22.06 11.83 55.55 0.66 -21.41 16 14 Si 0.90 19.93 29.56 -169.99 -5.02 14.91 16 15 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 C -0.11 -1.68 3.49 -104.48 -0.36 -2.05 16 19 C -0.06 -0.93 9.08 -39.28 -0.36 -1.29 16 20 C -0.17 -2.10 10.11 -39.44 -0.40 -2.50 16 21 C 0.08 1.05 11.18 -17.55 -0.20 0.85 16 22 N -0.48 -7.23 10.36 -13.26 -0.14 -7.37 16 23 C 0.09 1.38 9.99 -17.55 -0.18 1.21 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.10 2.00 6.16 -51.93 -0.32 1.68 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.14 2.83 6.32 -51.93 -0.33 2.50 16 28 H 0.10 1.33 6.24 -51.93 -0.32 1.01 16 29 H 0.40 4.54 9.10 45.56 0.41 4.95 16 30 H 0.38 7.91 6.64 -40.82 -0.27 7.64 16 31 H 0.27 7.02 8.29 -40.82 -0.34 6.69 16 32 H 0.14 1.96 6.82 -52.48 -0.36 1.60 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.15 2.01 6.07 -52.49 -0.32 1.69 16 LS Contribution 298.45 15.07 4.50 4.50 Total: -1.00 -34.01 298.45 -5.28 -39.29 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -2.74 Total: 15.32 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -1.62 Total: 6.77 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.35 Total: -44.94 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.75 Total: -35.84 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.01 -5.28 -39.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604077621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.831 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds