Wall clock time and date at job start Tue Mar 31 2020 00:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46884 * 2 1 4 4 C 1.50700 * 109.46976 * 184.99419 * 3 2 1 5 5 O 1.20824 * 119.99977 * 0.02562 * 4 3 2 6 6 O 1.34229 * 120.00240 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47572 * 239.99933 * 2 1 3 8 8 C 1.34778 * 120.00013 * 60.00027 * 7 2 1 9 9 O 1.21688 * 119.99913 * 359.97438 * 8 7 2 10 10 C 1.46372 * 120.00079 * 180.02562 * 8 7 2 11 11 H 1.08004 * 119.99613 * 359.97438 * 10 8 7 12 12 C 1.40046 * 120.00244 * 180.02562 * 10 8 7 13 13 N 1.30674 * 119.99693 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00226 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46944 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.46908 * 119.99578 * 14 12 10 17 17 H 1.48493 * 109.47077 * 239.99767 * 14 12 10 18 18 C 1.50696 * 109.46976 * 119.99385 * 2 1 3 19 19 C 1.38678 * 120.41768 * 89.98442 * 18 2 1 20 20 C 1.38627 * 118.42399 * 180.02562 * 19 18 2 21 21 C 1.38220 * 119.16050 * 0.02562 * 20 19 18 22 22 N 1.31860 * 120.76284 * 359.97438 * 21 20 19 23 23 C 1.31884 * 121.72590 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47561 * 300.00062 * 1 2 3 25 25 H 1.09004 * 109.46814 * 60.00359 * 1 2 3 26 26 H 1.08998 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47102 * 304.99620 * 3 2 1 28 28 H 1.08996 * 109.47079 * 64.99854 * 3 2 1 29 29 H 0.96695 * 117.00652 * 180.02562 * 6 4 3 30 30 H 0.96999 * 119.99866 * 239.99876 * 7 2 1 31 31 H 0.96998 * 119.99704 * 180.02562 * 13 12 10 32 32 H 1.08007 * 120.78855 * 359.97438 * 19 18 2 33 33 H 1.08000 * 120.41839 * 180.02562 * 20 19 18 34 34 H 1.07999 * 119.62072 * 180.02562 * 21 20 19 35 35 H 1.07995 * 119.61420 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5419 1.4444 -0.1237 5 8 4.1427 0.3992 -0.2041 6 8 4.2121 2.6072 -0.1456 7 7 2.0184 -0.6906 -1.1961 8 6 1.6929 -0.2302 -2.4203 9 8 0.9929 0.7589 -2.5320 10 6 2.1804 -0.9205 -3.6154 11 1 2.8014 -1.7986 -3.5162 12 6 1.8427 -0.4418 -4.8874 13 7 1.0918 0.6210 -5.0073 14 14 2.4655 -1.3223 -6.4126 15 1 3.2904 -2.4890 -6.0083 16 1 1.3105 -1.7886 -7.2212 17 1 3.2909 -0.3891 -7.2205 18 6 2.0323 -0.7103 1.2305 19 6 2.2660 -2.0770 1.2061 20 6 2.7273 -2.6883 2.3616 21 6 2.9369 -1.9208 3.4919 22 7 2.7039 -0.6230 3.4787 23 6 2.2648 -0.0082 2.3977 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6053 1.9816 -0.8418 28 1 1.7515 1.9299 0.9313 29 1 5.1744 2.5578 -0.2267 30 1 2.5761 -1.4792 -1.1071 31 1 0.8575 0.9523 -5.8883 32 1 2.0920 -2.6517 0.3083 33 1 2.9203 -3.7507 2.3785 34 1 3.2966 -2.3893 4.3961 35 1 2.0849 1.0563 2.4251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604077621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:42 Heat of formation + Delta-G solvation = -111.236928 kcal Electronic energy + Delta-G solvation = -22348.581074 eV Core-core repulsion = 18924.880132 eV Total energy + Delta-G solvation = -3423.700942 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02490 -40.70265 -39.51362 -37.20342 -36.48343 -34.54008 -33.27145 -32.64277 -31.03180 -29.46409 -28.14655 -25.13137 -24.49913 -23.09618 -22.26310 -20.25444 -19.55492 -18.98970 -18.19932 -17.66790 -17.27121 -17.09887 -16.62234 -16.45771 -15.63441 -15.29120 -15.15170 -14.69055 -14.64788 -14.36887 -13.98133 -13.85437 -13.52420 -13.24664 -13.05328 -12.95204 -12.71916 -12.60689 -12.55741 -12.37545 -12.03560 -11.92526 -11.47194 -10.91829 -10.71289 -10.46283 -9.95293 -9.61801 -9.35886 -8.25478 -6.80510 0.18294 0.35512 1.33068 1.37410 1.38805 1.54472 2.19200 2.25107 2.50410 2.85762 3.07714 3.39633 3.57836 3.67030 3.80754 4.02470 4.06967 4.27477 4.29727 4.39076 4.62357 4.62710 4.79309 4.82434 4.84773 5.01587 5.19750 5.33612 5.35468 5.44253 5.65584 5.77485 5.92052 6.23183 6.34791 6.91238 7.00883 7.06849 7.57558 8.53271 8.71489 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021878 B = 0.005930 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.532020 B = 4720.403355 C = 5087.232101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.242 3.758 3 C -0.128 4.128 4 C 0.482 3.518 5 O -0.525 6.525 6 O -0.519 6.519 7 N -0.737 5.737 8 C 0.550 3.450 9 O -0.609 6.609 10 C -0.576 4.576 11 H 0.073 0.927 12 C 0.037 3.963 13 N -0.814 5.814 14 Si 0.986 3.014 15 H -0.255 1.255 16 H -0.266 1.266 17 H -0.271 1.271 18 C -0.118 4.118 19 C -0.079 4.079 20 C -0.159 4.159 21 C 0.082 3.918 22 N -0.499 5.499 23 C 0.086 3.914 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.135 0.865 29 H 0.421 0.579 30 H 0.388 0.612 31 H 0.273 0.727 32 H 0.134 0.866 33 H 0.166 0.834 34 H 0.186 0.814 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -3.671 12.946 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.154 3.846 3 C -0.166 4.166 4 C 0.325 3.675 5 O -0.414 6.414 6 O -0.333 6.333 7 N -0.391 5.391 8 C 0.354 3.646 9 O -0.495 6.495 10 C -0.613 4.613 11 H 0.091 0.909 12 C -0.178 4.178 13 N -0.444 5.444 14 Si 0.806 3.194 15 H -0.178 1.178 16 H -0.191 1.191 17 H -0.196 1.196 18 C -0.120 4.120 19 C -0.105 4.105 20 C -0.178 4.178 21 C -0.075 4.075 22 N -0.207 5.207 23 C -0.071 4.071 24 H 0.101 0.899 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.123 0.877 28 H 0.152 0.848 29 H 0.281 0.719 30 H 0.222 0.778 31 H 0.083 0.917 32 H 0.151 0.849 33 H 0.183 0.817 34 H 0.203 0.797 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.849 -2.609 13.551 14.091 hybrid contribution 0.948 -0.987 -1.858 2.308 sum 3.797 -3.596 11.694 12.810 Atomic orbital electron populations 1.22093 0.92970 1.02353 1.03071 1.18555 0.93850 0.88756 0.83453 1.22008 0.87524 1.00328 1.06779 1.23487 0.91861 0.80931 0.71247 1.90645 1.70746 1.33986 1.46037 1.84495 1.28121 1.35409 1.85239 1.45977 1.56285 1.32889 1.03957 1.18256 0.79725 0.83886 0.82715 1.90493 1.42904 1.29430 1.86689 1.21396 1.34497 1.14458 0.90907 0.90913 1.26727 0.93044 0.94668 1.03410 1.70141 1.28576 1.20403 1.25238 0.85141 0.78740 0.78847 0.76645 1.17819 1.19128 1.19562 1.20755 1.00212 0.95467 0.95587 1.21589 0.95550 0.94009 0.99355 1.22429 0.99521 1.02972 0.92899 1.23291 0.95741 0.89177 0.99245 1.67714 1.11972 1.12285 1.28760 1.22709 0.95832 1.00657 0.87859 0.89857 0.92358 0.92572 0.87732 0.84759 0.71870 0.77785 0.91694 0.84864 0.81657 0.79733 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 8.38 71.98 0.60 -4.57 16 2 C 0.24 8.74 0.51 2.86 0.00 8.74 16 3 C -0.13 -4.54 4.16 29.85 0.12 -4.41 16 4 C 0.48 17.62 7.57 71.24 0.54 18.16 16 5 O -0.53 -21.42 14.77 21.97 0.32 -21.09 16 6 O -0.52 -15.75 13.42 -51.41 -0.69 -16.44 16 7 N -0.74 -32.24 3.34 -430.57 -1.44 -33.68 16 8 C 0.55 30.16 7.17 86.36 0.62 30.78 16 9 O -0.61 -36.61 11.28 -4.31 -0.05 -36.66 16 10 C -0.58 -32.41 9.54 24.83 0.24 -32.17 16 11 H 0.07 3.84 7.85 -2.91 -0.02 3.82 16 12 C 0.04 2.04 5.50 85.30 0.47 2.51 16 13 N -0.81 -48.24 11.83 21.84 0.26 -47.98 16 14 Si 0.99 41.17 29.56 68.60 2.03 43.20 16 15 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 16 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 18 C -0.12 -3.62 3.49 -19.78 -0.07 -3.69 16 19 C -0.08 -2.21 9.08 22.47 0.20 -2.00 16 20 C -0.16 -3.49 10.11 22.36 0.23 -3.26 16 21 C 0.08 1.83 11.18 84.68 0.95 2.77 16 22 N -0.50 -13.62 10.36 -195.85 -2.03 -15.65 16 23 C 0.09 2.43 9.99 84.67 0.85 3.28 16 24 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.06 2.52 6.16 -2.38 -0.01 2.51 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.10 4.50 6.32 -2.39 -0.02 4.48 16 28 H 0.13 3.58 6.24 -2.39 -0.01 3.56 16 29 H 0.42 8.98 9.10 -74.06 -0.67 8.31 16 30 H 0.39 16.22 6.64 -92.71 -0.62 15.61 16 31 H 0.27 14.72 8.29 -92.71 -0.77 13.95 16 32 H 0.13 3.74 6.82 -2.91 -0.02 3.72 16 33 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 35 H 0.16 3.98 6.07 -2.91 -0.02 3.96 16 Total: -1.00 -75.51 298.45 3.02 -72.49 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -0.13 Total: 39.67 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 4.75 Total: 16.14 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -3.21 Total: -97.31 kcal Atomic # 8 Polarization: -73.77 SS G_CDS: -0.41 Total: -74.19 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -75.51 3.02 -72.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604077621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.746 kcal (2) G-P(sol) polarization free energy of solvation -75.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds