Wall clock time and date at job start Tue Mar 31 2020 00:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46649 * 2 1 4 4 C 1.50698 * 109.46721 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99978 * 0.02562 * 4 3 2 6 6 O 1.34230 * 120.00250 * 180.02562 * 4 3 2 7 7 N 1.46500 * 109.46891 * 119.99667 * 2 1 3 8 8 C 1.34773 * 120.00431 * 300.00479 * 7 2 1 9 9 O 1.21693 * 119.99830 * 359.97438 * 8 7 2 10 10 C 1.46368 * 120.00188 * 179.72417 * 8 7 2 11 11 H 1.08001 * 120.00155 * 0.27756 * 10 8 7 12 12 C 1.40047 * 120.00322 * 180.27118 * 10 8 7 13 13 N 1.30674 * 119.99675 * 0.02562 * 12 10 8 14 14 Si 1.86795 * 120.00219 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47294 * 90.00321 * 14 12 10 16 16 H 1.48499 * 109.47218 * 210.00181 * 14 12 10 17 17 H 1.48496 * 109.47166 * 330.00013 * 14 12 10 18 18 C 1.50698 * 109.47169 * 239.99977 * 2 1 3 19 19 C 1.38671 * 120.41730 * 269.72169 * 18 2 1 20 20 C 1.38635 * 118.41873 * 179.78600 * 19 18 2 21 21 C 1.38223 * 119.15663 * 0.50895 * 20 19 18 22 22 N 1.31850 * 120.76899 * 359.72851 * 21 20 19 23 23 C 1.31889 * 121.72442 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47528 * 300.00006 * 1 2 3 25 25 H 1.09003 * 109.47135 * 60.00032 * 1 2 3 26 26 H 1.09001 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47098 * 299.99438 * 3 2 1 28 28 H 1.08994 * 109.46956 * 60.00139 * 3 2 1 29 29 H 0.96696 * 117.00038 * 180.02562 * 6 4 3 30 30 H 0.97000 * 119.99456 * 120.00041 * 7 2 1 31 31 H 0.96999 * 119.99862 * 179.97438 * 13 12 10 32 32 H 1.08002 * 120.79198 * 0.02562 * 19 18 2 33 33 H 1.08001 * 120.41619 * 180.21780 * 20 19 18 34 34 H 1.08006 * 119.61496 * 179.74908 * 21 20 19 35 35 H 1.08002 * 119.61440 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1511 0.3962 0.0006 6 8 4.2181 2.6050 0.0013 7 7 2.0183 -0.6905 1.1962 8 6 1.6927 -0.2302 2.4203 9 8 0.9934 0.7595 2.5319 10 6 2.1756 -0.9236 3.6154 11 1 2.7966 -1.8017 3.5164 12 6 1.8325 -0.4486 4.8874 13 7 1.0808 0.6136 5.0072 14 14 2.4494 -1.3332 6.4126 15 1 3.7560 -0.7593 6.8233 16 1 1.4671 -1.1653 7.5135 17 1 2.6154 -2.7782 6.1135 18 6 2.0324 -0.7104 -1.2304 19 6 2.2719 -2.0760 -1.2041 20 6 2.7292 -2.6881 -2.3609 21 6 2.9399 -1.9204 -3.4909 22 7 2.7061 -0.6229 -3.4780 23 6 2.2661 -0.0081 -2.3973 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 5.1838 2.5544 0.0013 30 1 2.5760 -1.4792 1.1072 31 1 0.8429 0.9425 5.8882 32 1 2.1025 -2.6498 -0.3049 33 1 2.9229 -3.7505 -2.3775 34 1 3.3000 -2.3890 -4.3949 35 1 2.0855 1.0563 -2.4250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604077626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:44 Heat of formation + Delta-G solvation = -87.494209 kcal Electronic energy + Delta-G solvation = -22340.604734 eV Core-core repulsion = 18917.933353 eV Total energy + Delta-G solvation = -3422.671381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.72653 -39.42105 -37.86011 -35.73115 -34.89807 -32.51342 -32.12460 -30.98131 -29.79234 -28.01862 -26.15385 -23.85356 -23.33603 -21.74908 -20.62336 -18.65178 -17.91555 -17.60929 -16.80114 -16.17713 -15.98362 -15.43510 -15.19864 -14.99836 -14.15468 -13.88455 -13.83873 -13.34531 -13.02655 -12.85734 -12.56354 -12.32944 -12.21683 -11.71307 -11.55805 -11.32219 -11.11953 -11.01403 -10.92627 -10.65962 -10.47948 -10.24741 -10.05327 -9.57619 -9.33726 -8.90404 -8.77631 -7.60037 -7.59344 -6.23819 -4.68991 1.27188 1.47880 2.74645 3.10918 3.18478 3.21308 3.48918 3.96121 4.06985 4.50353 4.51254 4.64756 4.86823 4.96444 5.14764 5.16699 5.33744 5.56040 5.64353 5.75059 5.78967 5.86490 6.04043 6.15438 6.27101 6.31347 6.35021 6.60226 6.82025 6.92303 6.94711 7.39092 7.84347 8.02420 8.09257 8.28213 8.36561 8.98012 9.45712 10.52370 10.70545 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021906 B = 0.005900 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.865821 B = 4744.471596 C = 5114.009310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.244 3.756 3 C -0.129 4.129 4 C 0.482 3.518 5 O -0.503 6.503 6 O -0.524 6.524 7 N -0.749 5.749 8 C 0.559 3.441 9 O -0.578 6.578 10 C -0.542 4.542 11 H 0.066 0.934 12 C 0.090 3.910 13 N -0.766 5.766 14 Si 0.906 3.094 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.265 1.265 18 C -0.102 4.102 19 C -0.064 4.064 20 C -0.167 4.167 21 C 0.081 3.919 22 N -0.483 5.483 23 C 0.092 3.908 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.140 0.860 29 H 0.402 0.598 30 H 0.384 0.616 31 H 0.268 0.732 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.150 0.850 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -2.327 -11.571 12.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.155 3.845 3 C -0.168 4.168 4 C 0.324 3.676 5 O -0.389 6.389 6 O -0.335 6.335 7 N -0.405 5.405 8 C 0.364 3.636 9 O -0.462 6.462 10 C -0.579 4.579 11 H 0.084 0.916 12 C -0.130 4.130 13 N -0.394 5.394 14 Si 0.730 3.270 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.189 1.189 18 C -0.104 4.104 19 C -0.090 4.090 20 C -0.187 4.187 21 C -0.076 4.076 22 N -0.191 5.191 23 C -0.065 4.065 24 H 0.115 0.885 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.157 0.843 29 H 0.259 0.741 30 H 0.218 0.782 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.167 0.833 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.766 -1.267 -12.121 12.314 hybrid contribution 1.253 -1.396 1.543 2.429 sum 3.019 -2.662 -10.578 11.318 Atomic orbital electron populations 1.22208 0.93091 1.02499 1.03454 1.18448 0.93710 0.88546 0.83804 1.22066 0.87243 1.00493 1.06990 1.23450 0.91842 0.80772 0.71497 1.90667 1.70351 1.32978 1.44952 1.84551 1.26007 1.36737 1.86231 1.46288 1.57182 1.33014 1.04030 1.18137 0.80030 0.84249 0.81217 1.90512 1.41744 1.28275 1.85693 1.20871 1.33811 1.13699 0.89556 0.91593 1.25663 0.93315 0.94135 0.99920 1.69997 1.26734 1.18569 1.24120 0.86403 0.79019 0.80499 0.81043 1.19807 1.20433 1.18943 1.20964 0.98183 0.94917 0.96317 1.21412 0.95020 0.94244 0.98314 1.22084 1.01239 1.01269 0.94133 1.22628 0.97278 0.89778 0.97914 1.67631 1.11453 1.11086 1.28953 1.22539 0.95831 0.99963 0.88167 0.88528 0.93108 0.92579 0.88497 0.84266 0.74093 0.78195 0.92110 0.84567 0.85032 0.83253 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.38 37.16 0.31 -2.38 16 2 C 0.24 4.40 0.52 -132.97 -0.07 4.33 16 3 C -0.13 -2.29 4.17 -27.88 -0.12 -2.40 16 4 C 0.48 8.75 7.36 36.00 0.27 9.01 16 5 O -0.50 -10.11 14.69 -18.75 -0.28 -10.39 16 6 O -0.52 -8.03 13.42 -39.26 -0.53 -8.56 16 7 N -0.75 -15.99 3.67 -50.08 -0.18 -16.17 16 8 C 0.56 14.73 7.17 -12.99 -0.09 14.64 16 9 O -0.58 -16.55 11.22 5.20 0.06 -16.50 16 10 C -0.54 -14.85 9.54 -35.63 -0.34 -15.19 16 11 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 12 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 13 N -0.77 -21.96 11.83 55.55 0.66 -21.30 16 14 Si 0.91 19.84 29.56 -169.99 -5.02 14.82 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 C -0.10 -1.63 3.23 -104.48 -0.34 -1.97 16 19 C -0.06 -0.95 9.08 -39.27 -0.36 -1.30 16 20 C -0.17 -2.12 10.11 -39.44 -0.40 -2.52 16 21 C 0.08 1.05 11.18 -17.55 -0.20 0.86 16 22 N -0.48 -7.32 10.36 -13.25 -0.14 -7.46 16 23 C 0.09 1.41 9.67 -17.55 -0.17 1.24 16 24 H 0.10 2.00 6.16 -51.93 -0.32 1.68 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.10 1.35 6.54 -51.93 -0.34 1.01 16 28 H 0.14 2.91 6.16 -51.93 -0.32 2.59 16 29 H 0.40 4.42 9.10 45.56 0.41 4.83 16 30 H 0.38 7.86 6.68 -40.82 -0.27 7.59 16 31 H 0.27 7.03 8.29 -40.82 -0.34 6.70 16 32 H 0.14 1.97 6.80 -52.49 -0.36 1.61 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.15 2.02 6.18 -52.49 -0.32 1.70 16 LS Contribution 298.16 15.07 4.49 4.49 Total: -1.00 -33.76 298.16 -5.29 -39.05 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -2.76 Total: 15.37 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.60 Total: 6.64 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.34 Total: -44.93 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.74 Total: -35.44 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.76 -5.29 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604077626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.447 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds