Wall clock time and date at job start Tue Mar 31 2020 00:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46649 * 2 1 4 4 C 1.50698 * 109.46721 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99978 * 0.02562 * 4 3 2 6 6 O 1.34230 * 120.00250 * 180.02562 * 4 3 2 7 7 N 1.46500 * 109.46891 * 119.99667 * 2 1 3 8 8 C 1.34773 * 120.00431 * 300.00479 * 7 2 1 9 9 O 1.21693 * 119.99830 * 359.97438 * 8 7 2 10 10 C 1.46368 * 120.00188 * 179.72417 * 8 7 2 11 11 H 1.08001 * 120.00155 * 0.27756 * 10 8 7 12 12 C 1.40047 * 120.00322 * 180.27118 * 10 8 7 13 13 N 1.30674 * 119.99675 * 0.02562 * 12 10 8 14 14 Si 1.86795 * 120.00219 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47294 * 90.00321 * 14 12 10 16 16 H 1.48499 * 109.47218 * 210.00181 * 14 12 10 17 17 H 1.48496 * 109.47166 * 330.00013 * 14 12 10 18 18 C 1.50698 * 109.47169 * 239.99977 * 2 1 3 19 19 C 1.38671 * 120.41730 * 269.72169 * 18 2 1 20 20 C 1.38635 * 118.41873 * 179.78600 * 19 18 2 21 21 C 1.38223 * 119.15663 * 0.50895 * 20 19 18 22 22 N 1.31850 * 120.76899 * 359.72851 * 21 20 19 23 23 C 1.31889 * 121.72442 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47528 * 300.00006 * 1 2 3 25 25 H 1.09003 * 109.47135 * 60.00032 * 1 2 3 26 26 H 1.09001 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47098 * 299.99438 * 3 2 1 28 28 H 1.08994 * 109.46956 * 60.00139 * 3 2 1 29 29 H 0.96696 * 117.00038 * 180.02562 * 6 4 3 30 30 H 0.97000 * 119.99456 * 120.00041 * 7 2 1 31 31 H 0.96999 * 119.99862 * 179.97438 * 13 12 10 32 32 H 1.08002 * 120.79198 * 0.02562 * 19 18 2 33 33 H 1.08001 * 120.41619 * 180.21780 * 20 19 18 34 34 H 1.08006 * 119.61496 * 179.74908 * 21 20 19 35 35 H 1.08002 * 119.61440 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1511 0.3962 0.0006 6 8 4.2181 2.6050 0.0013 7 7 2.0183 -0.6905 1.1962 8 6 1.6927 -0.2302 2.4203 9 8 0.9934 0.7595 2.5319 10 6 2.1756 -0.9236 3.6154 11 1 2.7966 -1.8017 3.5164 12 6 1.8325 -0.4486 4.8874 13 7 1.0808 0.6136 5.0072 14 14 2.4494 -1.3332 6.4126 15 1 3.7560 -0.7593 6.8233 16 1 1.4671 -1.1653 7.5135 17 1 2.6154 -2.7782 6.1135 18 6 2.0324 -0.7104 -1.2304 19 6 2.2719 -2.0760 -1.2041 20 6 2.7292 -2.6881 -2.3609 21 6 2.9399 -1.9204 -3.4909 22 7 2.7061 -0.6229 -3.4780 23 6 2.2661 -0.0081 -2.3973 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 5.1838 2.5544 0.0013 30 1 2.5760 -1.4792 1.1072 31 1 0.8429 0.9425 5.8882 32 1 2.1025 -2.6498 -0.3049 33 1 2.9229 -3.7505 -2.3775 34 1 3.3000 -2.3890 -4.3949 35 1 2.0855 1.0563 -2.4250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604077626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:44 Heat of formation + Delta-G solvation = -112.520237 kcal Electronic energy + Delta-G solvation = -22341.689944 eV Core-core repulsion = 18917.933353 eV Total energy + Delta-G solvation = -3423.756591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.04675 -40.68053 -39.53503 -37.21982 -36.47820 -34.54037 -33.26192 -32.64974 -31.03091 -29.46638 -28.14961 -25.12826 -24.48273 -23.10418 -22.27491 -20.25243 -19.55845 -18.99718 -18.19182 -17.66429 -17.27181 -17.11647 -16.61362 -16.47247 -15.63761 -15.29192 -15.16219 -14.67734 -14.64050 -14.37585 -13.97777 -13.86878 -13.50661 -13.26093 -13.02814 -12.95804 -12.72655 -12.60237 -12.56340 -12.38860 -12.05305 -11.92892 -11.50073 -10.90866 -10.69587 -10.46066 -9.93100 -9.62166 -9.38010 -8.25397 -6.80914 0.19384 0.36649 1.31480 1.39119 1.39199 1.53635 2.18504 2.24874 2.50315 2.86156 3.06784 3.40882 3.58001 3.67026 3.80280 4.03032 4.07440 4.28258 4.30005 4.38577 4.61748 4.63350 4.79392 4.82606 4.84223 5.01708 5.20229 5.33441 5.35791 5.44128 5.64509 5.78239 5.91235 6.22315 6.33738 6.90989 7.01604 7.05762 7.56494 8.52798 8.70891 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021906 B = 0.005900 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.865821 B = 4744.471596 C = 5114.009310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.242 3.758 3 C -0.130 4.130 4 C 0.482 3.518 5 O -0.526 6.526 6 O -0.518 6.518 7 N -0.739 5.739 8 C 0.550 3.450 9 O -0.608 6.608 10 C -0.577 4.577 11 H 0.074 0.926 12 C 0.038 3.962 13 N -0.813 5.813 14 Si 0.986 3.014 15 H -0.267 1.267 16 H -0.271 1.271 17 H -0.254 1.254 18 C -0.113 4.113 19 C -0.080 4.080 20 C -0.159 4.159 21 C 0.081 3.919 22 N -0.499 5.499 23 C 0.086 3.914 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.134 0.866 28 H 0.105 0.895 29 H 0.421 0.579 30 H 0.388 0.612 31 H 0.273 0.727 32 H 0.134 0.866 33 H 0.166 0.834 34 H 0.185 0.815 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 -3.655 -12.798 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.154 3.846 3 C -0.168 4.168 4 C 0.326 3.674 5 O -0.415 6.415 6 O -0.332 6.332 7 N -0.393 5.393 8 C 0.354 3.646 9 O -0.494 6.494 10 C -0.614 4.614 11 H 0.092 0.908 12 C -0.178 4.178 13 N -0.443 5.443 14 Si 0.806 3.194 15 H -0.192 1.192 16 H -0.196 1.196 17 H -0.178 1.178 18 C -0.115 4.115 19 C -0.106 4.106 20 C -0.178 4.178 21 C -0.076 4.076 22 N -0.207 5.207 23 C -0.071 4.071 24 H 0.077 0.923 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.152 0.848 28 H 0.123 0.877 29 H 0.282 0.718 30 H 0.222 0.778 31 H 0.083 0.917 32 H 0.151 0.849 33 H 0.183 0.817 34 H 0.202 0.798 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.847 -2.590 -13.389 13.931 hybrid contribution 0.966 -0.983 1.784 2.255 sum 3.814 -3.573 -11.605 12.727 Atomic orbital electron populations 1.22093 0.92963 1.02367 1.03076 1.18559 0.93858 0.88744 0.83427 1.22011 0.87421 1.00322 1.07043 1.23478 0.92046 0.80965 0.70958 1.90651 1.70827 1.33818 1.46172 1.84501 1.27775 1.35330 1.85574 1.45998 1.56426 1.32888 1.04021 1.18264 0.79746 0.83922 0.82686 1.90493 1.42871 1.29403 1.86663 1.21376 1.34633 1.14465 0.90884 0.90805 1.26726 0.92996 0.94699 1.03405 1.70132 1.28337 1.20485 1.25328 0.85189 0.78463 0.79433 0.76292 1.19151 1.19566 1.17751 1.20725 0.99880 0.95437 0.95507 1.21575 0.95652 0.94017 0.99339 1.22424 0.99537 1.02927 0.92908 1.23272 0.95868 0.89179 0.99257 1.67697 1.11964 1.12305 1.28776 1.22657 0.95920 1.00530 0.87960 0.92310 0.89896 0.92557 0.84807 0.87682 0.71812 0.77772 0.91667 0.84857 0.81683 0.79794 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 8.38 71.98 0.60 -4.57 16 2 C 0.24 8.75 0.52 2.86 0.00 8.75 16 3 C -0.13 -4.60 4.17 29.85 0.12 -4.47 16 4 C 0.48 17.32 7.36 71.24 0.52 17.85 16 5 O -0.53 -20.93 14.69 21.95 0.32 -20.61 16 6 O -0.52 -15.40 13.42 -51.41 -0.69 -16.09 16 7 N -0.74 -32.20 3.67 -430.57 -1.58 -33.79 16 8 C 0.55 30.00 7.17 86.36 0.62 30.62 16 9 O -0.61 -36.42 11.22 -4.33 -0.05 -36.47 16 10 C -0.58 -32.26 9.54 24.83 0.24 -32.02 16 11 H 0.07 3.85 7.85 -2.91 -0.02 3.83 16 12 C 0.04 2.05 5.50 85.30 0.47 2.52 16 13 N -0.81 -48.01 11.83 21.84 0.26 -47.75 16 14 Si 0.99 40.93 29.56 68.60 2.03 42.95 16 15 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 16 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 17 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 18 C -0.11 -3.50 3.23 -19.78 -0.06 -3.56 16 19 C -0.08 -2.25 9.08 22.47 0.20 -2.04 16 20 C -0.16 -3.53 10.11 22.36 0.23 -3.31 16 21 C 0.08 1.83 11.18 84.69 0.95 2.78 16 22 N -0.50 -13.85 10.36 -195.84 -2.03 -15.87 16 23 C 0.09 2.47 9.67 84.67 0.82 3.29 16 24 H 0.06 2.54 6.16 -2.39 -0.01 2.53 16 25 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.13 3.60 6.54 -2.39 -0.02 3.58 16 28 H 0.11 4.57 6.16 -2.39 -0.01 4.55 16 29 H 0.42 8.68 9.10 -74.06 -0.67 8.01 16 30 H 0.39 16.11 6.68 -92.71 -0.62 15.49 16 31 H 0.27 14.72 8.29 -92.71 -0.77 13.95 16 32 H 0.13 3.75 6.80 -2.91 -0.02 3.73 16 33 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.16 4.01 6.18 -2.91 -0.02 4.00 16 Total: -1.00 -74.89 298.16 2.84 -72.05 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: -0.13 Total: 39.75 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 4.71 Total: 15.83 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -3.35 Total: -97.41 kcal Atomic # 8 Polarization: -72.75 SS G_CDS: -0.42 Total: -73.17 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -74.89 2.84 -72.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604077626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.469 kcal (2) G-P(sol) polarization free energy of solvation -74.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds