Wall clock time and date at job start Tue Mar 31 2020 00:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47557 * 2 1 4 4 H 1.09004 * 109.47177 * 305.00106 * 3 2 1 5 5 C 1.50701 * 109.47040 * 65.00023 * 3 2 1 6 6 O 1.20825 * 120.00269 * 120.00300 * 5 3 2 7 7 O 1.34229 * 119.99973 * 299.99678 * 5 3 2 8 8 C 1.50700 * 109.47348 * 184.99951 * 3 2 1 9 9 O 1.21271 * 120.00013 * 0.02562 * 8 3 2 10 10 N 1.34778 * 119.99757 * 180.02562 * 8 3 2 11 11 C 1.39479 * 119.99720 * 174.90153 * 10 8 3 12 12 C 1.38589 * 119.57790 * 174.65087 * 11 10 8 13 13 C 1.40811 * 118.79685 * 179.97438 * 12 11 10 14 14 C 1.41539 * 120.99916 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00119 * 206.25955 * 14 13 12 16 16 C 1.40032 * 120.00062 * 26.26636 * 14 13 12 17 17 N 1.30743 * 120.00006 * 9.84595 * 16 14 13 18 18 Si 1.86798 * 119.99909 * 189.85060 * 16 14 13 19 19 H 1.48500 * 109.47274 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47146 * 119.99919 * 18 16 14 21 21 H 1.48502 * 109.47028 * 239.99578 * 18 16 14 22 22 C 1.41175 * 118.00403 * 359.97438 * 13 12 11 23 23 C 1.37594 * 119.01611 * 0.02562 * 22 13 12 24 24 N 1.32075 * 121.10601 * 359.97438 * 23 22 13 25 25 H 1.08997 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46574 * 299.99962 * 1 2 3 27 27 H 1.09000 * 109.46828 * 59.99786 * 1 2 3 28 28 H 1.09005 * 109.47256 * 239.99868 * 2 1 3 29 29 H 1.09000 * 109.46828 * 120.00214 * 2 1 3 30 30 H 0.96708 * 117.00001 * 179.97438 * 7 5 3 31 31 H 0.96999 * 120.00675 * 354.89195 * 10 8 3 32 32 H 1.08007 * 120.60640 * 0.02562 * 12 11 10 33 33 H 0.96998 * 119.99942 * 180.02562 * 17 16 14 34 34 H 1.08001 * 120.49546 * 179.97438 * 22 13 12 35 35 H 1.07998 * 119.44246 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6415 2.1162 1.2877 6 8 2.4898 2.5530 2.0288 7 8 0.3438 2.2311 1.6113 8 6 3.5420 1.4441 -0.1238 9 8 4.1450 0.3951 -0.2046 10 7 4.2150 2.6116 -0.1448 11 6 5.6098 2.6125 -0.1520 12 6 6.2925 3.8111 -0.2858 13 6 7.7005 3.7929 -0.2905 14 6 8.4445 4.9894 -0.4250 15 1 9.4400 4.9623 -0.8430 16 6 7.8900 6.2085 -0.0158 17 7 6.7727 6.2233 0.6629 18 14 8.7467 7.8133 -0.4398 19 1 9.9849 7.5257 -1.2075 20 1 7.8402 8.6569 -1.2596 21 1 9.0963 8.5333 0.8110 22 6 8.3477 2.5454 -0.1571 23 6 7.5844 1.4077 -0.0296 24 7 6.2650 1.4677 -0.0299 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.1372 2.6706 2.4476 31 1 3.7295 3.4513 -0.1549 32 1 5.7544 4.7424 -0.3839 33 1 6.3884 7.0678 0.9460 34 1 9.4260 2.4847 -0.1560 35 1 8.0724 0.4497 0.0725 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604878822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:55 Heat of formation + Delta-G solvation = -95.245507 kcal Electronic energy + Delta-G solvation = -21357.880372 eV Core-core repulsion = 17934.872869 eV Total energy + Delta-G solvation = -3423.007502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83378 -39.30009 -37.83380 -36.22410 -34.70510 -34.17980 -33.71847 -30.53180 -29.41374 -27.86945 -25.98044 -23.41478 -22.66917 -21.91326 -20.70349 -19.50051 -18.21156 -17.67227 -17.30416 -16.81305 -15.96543 -15.49668 -15.20922 -14.25128 -14.18597 -14.15562 -13.95034 -13.77068 -13.28703 -12.89940 -12.80961 -12.58856 -12.12650 -11.85045 -11.78761 -11.42712 -11.20448 -11.17788 -10.96901 -10.90337 -10.48854 -10.27972 -10.11519 -9.74999 -9.49977 -9.37804 -7.97021 -7.74593 -7.02486 -6.72854 -4.61468 2.09643 2.33687 2.78037 2.84564 3.02638 3.08161 3.23448 3.49535 3.57649 3.86646 4.53737 4.70560 4.74114 4.94200 5.13529 5.30473 5.38171 5.65295 5.69750 5.91722 6.00357 6.03646 6.29097 6.36893 6.58043 6.64912 6.81021 6.96296 7.14315 7.39159 7.47010 7.74883 7.78313 7.94649 8.20887 8.41769 8.69154 8.76763 8.82664 9.68619 10.11562 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024128 B = 0.004665 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.213477 B = 6001.298899 C = 6870.967929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.100 4.100 3 C -0.104 4.104 4 H 0.131 0.869 5 C 0.483 3.517 6 O -0.490 6.490 7 O -0.509 6.509 8 C 0.517 3.483 9 O -0.470 6.470 10 N -0.644 5.644 11 C 0.338 3.662 12 C -0.236 4.236 13 C 0.142 3.858 14 C -0.454 4.454 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.794 5.794 18 Si 0.915 3.085 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.274 1.274 22 C -0.282 4.282 23 C 0.118 3.882 24 N -0.554 5.554 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.407 0.593 31 H 0.407 0.593 32 H 0.133 0.867 33 H 0.280 0.720 34 H 0.103 0.897 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.031 -2.970 -0.972 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.138 4.138 3 C -0.127 4.127 4 H 0.148 0.852 5 C 0.324 3.676 6 O -0.376 6.376 7 O -0.322 6.322 8 C 0.299 3.701 9 O -0.340 6.340 10 N -0.288 5.288 11 C 0.114 3.886 12 C -0.262 4.262 13 C 0.133 3.867 14 C -0.486 4.486 15 H 0.100 0.900 16 C -0.143 4.143 17 N -0.420 5.420 18 Si 0.739 3.261 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.199 1.199 22 C -0.305 4.305 23 C -0.037 4.037 24 N -0.273 5.273 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.267 0.733 31 H 0.242 0.758 32 H 0.150 0.850 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.955 -4.466 -0.970 13.737 hybrid contribution 0.423 2.459 0.460 2.537 sum -12.532 -2.007 -0.509 12.702 Atomic orbital electron populations 1.22019 0.94479 1.02061 1.03310 1.21298 0.96109 0.91484 1.04865 1.21466 0.95745 1.00337 0.95152 0.85177 1.22972 0.80292 0.76579 0.87805 1.90883 1.51292 1.44358 1.51026 1.84580 1.27920 1.74307 1.45416 1.19704 0.87311 0.84808 0.78243 1.90792 1.68093 1.30390 1.44688 1.43270 1.05315 1.08595 1.71636 1.18141 0.82169 0.90983 0.97346 1.21674 0.95229 0.95809 1.13466 1.17591 0.91088 0.92261 0.85730 1.19615 1.01830 0.90561 1.36590 0.89992 1.25962 0.94585 1.01339 0.92456 1.69762 1.17290 1.28687 1.26275 0.86158 0.80286 0.80536 0.79137 1.18340 1.19710 1.19883 1.21924 0.99049 0.94141 1.15432 1.21745 0.88683 0.96831 0.96424 1.67138 1.09592 1.26757 1.23814 0.92340 0.90571 0.92529 0.89322 0.90733 0.73332 0.75814 0.84958 0.90850 0.87925 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.55 37.16 0.36 -1.06 16 2 C -0.10 -1.16 4.74 -26.73 -0.13 -1.29 16 3 C -0.10 -1.37 2.66 -92.93 -0.25 -1.62 16 4 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 5 C 0.48 6.38 7.52 36.01 0.27 6.65 16 6 O -0.49 -8.73 16.25 -18.75 -0.30 -9.03 16 7 O -0.51 -4.53 10.57 -39.25 -0.41 -4.94 16 8 C 0.52 9.89 6.60 -10.98 -0.07 9.82 16 9 O -0.47 -10.70 14.21 5.57 0.08 -10.62 16 10 N -0.64 -13.30 4.70 -11.49 -0.05 -13.35 16 11 C 0.34 8.50 7.40 -154.70 -1.15 7.36 16 12 C -0.24 -6.18 8.61 -38.48 -0.33 -6.51 16 13 C 0.14 3.80 5.60 -106.55 -0.60 3.20 16 14 C -0.45 -11.85 9.14 -37.65 -0.34 -12.20 16 15 H 0.08 2.04 7.87 -52.48 -0.41 1.63 16 16 C 0.07 1.83 5.31 -17.34 -0.09 1.74 16 17 N -0.79 -20.04 10.70 55.55 0.59 -19.45 16 18 Si 0.91 18.19 29.57 -169.99 -5.03 13.16 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 C -0.28 -7.04 9.90 -38.70 -0.38 -7.43 16 23 C 0.12 2.89 11.15 -17.68 -0.20 2.69 16 24 N -0.55 -14.51 7.89 -12.52 -0.10 -14.61 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.66 5.46 -51.93 -0.28 0.38 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 1.06 7.95 -51.93 -0.41 0.65 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.41 2.08 9.10 45.56 0.41 2.50 16 31 H 0.41 7.26 8.59 -40.82 -0.35 6.91 16 32 H 0.13 3.44 6.11 -52.48 -0.32 3.12 16 33 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 34 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.12 2.64 8.06 -52.49 -0.42 2.21 16 LS Contribution 305.46 15.07 4.60 4.60 Total: -1.00 -34.07 305.46 -6.57 -40.64 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -3.04 Total: 12.26 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -2.91 Total: 1.36 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.44 Total: -47.41 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.64 Total: -24.60 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.07 -6.57 -40.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604878822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.609 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds