Wall clock time and date at job start Tue Mar 31 2020 00:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47557 * 2 1 4 4 H 1.09004 * 109.47177 * 305.00106 * 3 2 1 5 5 C 1.50701 * 109.47040 * 65.00023 * 3 2 1 6 6 O 1.20825 * 120.00269 * 120.00300 * 5 3 2 7 7 O 1.34229 * 119.99973 * 299.99678 * 5 3 2 8 8 C 1.50700 * 109.47348 * 184.99951 * 3 2 1 9 9 O 1.21271 * 120.00013 * 0.02562 * 8 3 2 10 10 N 1.34778 * 119.99757 * 180.02562 * 8 3 2 11 11 C 1.39479 * 119.99720 * 174.90153 * 10 8 3 12 12 C 1.38589 * 119.57790 * 174.65087 * 11 10 8 13 13 C 1.40811 * 118.79685 * 179.97438 * 12 11 10 14 14 C 1.41539 * 120.99916 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00119 * 206.25955 * 14 13 12 16 16 C 1.40032 * 120.00062 * 26.26636 * 14 13 12 17 17 N 1.30743 * 120.00006 * 9.84595 * 16 14 13 18 18 Si 1.86798 * 119.99909 * 189.85060 * 16 14 13 19 19 H 1.48500 * 109.47274 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47146 * 119.99919 * 18 16 14 21 21 H 1.48502 * 109.47028 * 239.99578 * 18 16 14 22 22 C 1.41175 * 118.00403 * 359.97438 * 13 12 11 23 23 C 1.37594 * 119.01611 * 0.02562 * 22 13 12 24 24 N 1.32075 * 121.10601 * 359.97438 * 23 22 13 25 25 H 1.08997 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46574 * 299.99962 * 1 2 3 27 27 H 1.09000 * 109.46828 * 59.99786 * 1 2 3 28 28 H 1.09005 * 109.47256 * 239.99868 * 2 1 3 29 29 H 1.09000 * 109.46828 * 120.00214 * 2 1 3 30 30 H 0.96708 * 117.00001 * 179.97438 * 7 5 3 31 31 H 0.96999 * 120.00675 * 354.89195 * 10 8 3 32 32 H 1.08007 * 120.60640 * 0.02562 * 12 11 10 33 33 H 0.96998 * 119.99942 * 180.02562 * 17 16 14 34 34 H 1.08001 * 120.49546 * 179.97438 * 22 13 12 35 35 H 1.07998 * 119.44246 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6415 2.1162 1.2877 6 8 2.4898 2.5530 2.0288 7 8 0.3438 2.2311 1.6113 8 6 3.5420 1.4441 -0.1238 9 8 4.1450 0.3951 -0.2046 10 7 4.2150 2.6116 -0.1448 11 6 5.6098 2.6125 -0.1520 12 6 6.2925 3.8111 -0.2858 13 6 7.7005 3.7929 -0.2905 14 6 8.4445 4.9894 -0.4250 15 1 9.4400 4.9623 -0.8430 16 6 7.8900 6.2085 -0.0158 17 7 6.7727 6.2233 0.6629 18 14 8.7467 7.8133 -0.4398 19 1 9.9849 7.5257 -1.2075 20 1 7.8402 8.6569 -1.2596 21 1 9.0963 8.5333 0.8110 22 6 8.3477 2.5454 -0.1571 23 6 7.5844 1.4077 -0.0296 24 7 6.2650 1.4677 -0.0299 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.1372 2.6706 2.4476 31 1 3.7295 3.4513 -0.1549 32 1 5.7544 4.7424 -0.3839 33 1 6.3884 7.0678 0.9460 34 1 9.4260 2.4847 -0.1560 35 1 8.0724 0.4497 0.0725 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604878822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:54 Heat of formation + Delta-G solvation = -118.748867 kcal Electronic energy + Delta-G solvation = -21358.899554 eV Core-core repulsion = 17934.872869 eV Total energy + Delta-G solvation = -3424.026684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.07042 -40.82910 -39.55723 -37.23252 -36.24849 -35.56503 -35.45796 -32.47573 -30.92456 -29.22088 -27.93142 -24.52220 -24.03219 -23.79028 -22.19772 -20.96767 -19.50345 -19.22472 -18.66938 -18.01542 -17.59983 -17.01477 -16.67972 -16.08229 -15.88500 -15.64003 -15.41119 -14.90120 -14.68257 -14.37899 -14.32128 -14.17716 -13.55145 -13.17268 -12.89846 -12.80178 -12.73954 -12.68658 -12.14217 -12.07834 -11.87387 -11.86102 -11.55190 -11.50900 -11.22248 -11.11819 -9.95393 -9.67019 -8.90277 -8.59557 -6.60187 0.64829 0.97768 1.05399 1.39345 1.40398 1.55927 1.58463 2.01990 2.19824 2.23751 2.81646 3.28022 3.65653 3.71947 3.95551 4.14757 4.25823 4.46450 4.53439 4.72445 4.79853 4.88132 4.91369 5.05813 5.16439 5.22520 5.24390 5.45789 5.51254 5.57735 5.60519 5.89589 6.08774 6.41333 6.55024 6.77204 6.82112 6.89933 7.15554 7.78048 8.28234 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024128 B = 0.004665 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.213477 B = 6001.298899 C = 6870.967929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.096 4.096 3 C -0.094 4.094 4 H 0.173 0.827 5 C 0.497 3.503 6 O -0.543 6.543 7 O -0.486 6.486 8 C 0.511 3.489 9 O -0.511 6.511 10 N -0.642 5.642 11 C 0.333 3.667 12 C -0.257 4.257 13 C 0.113 3.887 14 C -0.483 4.483 15 H 0.085 0.915 16 C 0.035 3.965 17 N -0.820 5.820 18 Si 0.993 3.007 19 H -0.256 1.256 20 H -0.261 1.261 21 H -0.267 1.267 22 C -0.295 4.295 23 C 0.112 3.888 24 N -0.578 5.578 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.429 0.571 31 H 0.418 0.582 32 H 0.127 0.873 33 H 0.291 0.709 34 H 0.118 0.882 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 -2.036 -1.355 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.134 4.134 3 C -0.116 4.116 4 H 0.190 0.810 5 C 0.340 3.660 6 O -0.433 6.433 7 O -0.300 6.300 8 C 0.296 3.704 9 O -0.383 6.383 10 N -0.287 5.287 11 C 0.107 3.893 12 C -0.282 4.282 13 C 0.104 3.896 14 C -0.514 4.514 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.446 5.446 18 Si 0.813 3.187 19 H -0.180 1.180 20 H -0.186 1.186 21 H -0.192 1.192 22 C -0.319 4.319 23 C -0.042 4.042 24 N -0.298 5.298 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.291 0.709 31 H 0.255 0.745 32 H 0.145 0.855 33 H 0.102 0.898 34 H 0.136 0.864 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.598 -3.539 -1.344 15.081 hybrid contribution 0.822 2.126 0.620 2.362 sum -13.776 -1.413 -0.724 13.867 Atomic orbital electron populations 1.21971 0.91582 1.03185 1.04232 1.21315 0.98367 0.89965 1.03771 1.21429 0.91033 1.02171 0.96989 0.81028 1.22805 0.80958 0.75282 0.86984 1.90887 1.52983 1.46874 1.52589 1.84515 1.24947 1.73813 1.46719 1.20697 0.89800 0.83492 0.76372 1.90760 1.69854 1.31558 1.46170 1.43356 1.03842 1.10049 1.71488 1.18424 0.84144 0.90506 0.96193 1.21665 0.95359 0.95982 1.15238 1.18039 0.91864 0.93425 0.86249 1.19920 1.02325 0.91484 1.37645 0.89657 1.26882 0.95145 1.04524 0.91546 1.69813 1.18370 1.30294 1.26172 0.84998 0.79147 0.75542 0.79046 1.17980 1.18575 1.19176 1.22123 0.99943 0.93890 1.15932 1.22239 0.88551 0.98009 0.95398 1.67275 1.10357 1.27246 1.24933 0.91236 0.90305 0.90822 0.89738 0.92726 0.70852 0.74526 0.85523 0.89838 0.86350 0.83027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.55 71.98 0.69 -1.47 16 2 C -0.10 -2.09 4.74 30.59 0.14 -1.94 16 3 C -0.09 -2.32 2.66 -12.29 -0.03 -2.35 16 4 H 0.17 2.80 8.14 -2.38 -0.02 2.78 16 5 C 0.50 12.28 7.52 71.24 0.54 12.82 16 6 O -0.54 -19.22 16.25 21.97 0.36 -18.86 16 7 O -0.49 -7.07 10.57 -51.40 -0.54 -7.61 16 8 C 0.51 19.61 6.60 87.66 0.58 20.19 16 9 O -0.51 -23.74 14.21 -3.00 -0.04 -23.78 16 10 N -0.64 -26.95 4.70 -308.67 -1.45 -28.40 16 11 C 0.33 17.22 7.40 132.75 0.98 18.21 16 12 C -0.26 -13.87 8.61 22.98 0.20 -13.67 16 13 C 0.11 6.20 5.60 -21.11 -0.12 6.08 16 14 C -0.48 -25.58 9.14 23.52 0.21 -25.36 16 15 H 0.09 4.30 7.87 -2.91 -0.02 4.28 16 16 C 0.03 1.71 5.31 85.29 0.45 2.16 16 17 N -0.82 -41.69 10.70 21.84 0.23 -41.46 16 18 Si 0.99 36.67 29.57 68.60 2.03 38.70 16 19 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 20 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 21 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 22 C -0.30 -15.08 9.90 22.84 0.23 -14.85 16 23 C 0.11 5.58 11.15 84.50 0.94 6.53 16 24 N -0.58 -31.02 7.89 -193.54 -1.53 -32.55 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 1.08 5.46 -2.39 -0.01 1.07 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.92 7.95 -2.38 -0.02 1.90 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.43 2.98 9.10 -74.05 -0.67 2.31 16 31 H 0.42 15.09 8.59 -92.71 -0.80 14.29 16 32 H 0.13 6.83 6.11 -2.91 -0.02 6.81 16 33 H 0.29 13.20 8.29 -92.71 -0.77 12.43 16 34 H 0.12 5.47 8.06 -2.91 -0.02 5.45 16 35 H 0.15 6.47 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -76.22 305.46 3.55 -72.67 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -0.32 Total: 34.97 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 4.81 Total: 6.33 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -2.74 Total: -102.41 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.23 Total: -50.26 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -76.22 3.55 -72.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604878822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.083 kcal (2) G-P(sol) polarization free energy of solvation -76.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds