Wall clock time and date at job start Tue Mar 31 2020 00:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47314 * 2 1 4 4 H 1.08996 * 109.47271 * 55.00100 * 3 2 1 5 5 C 1.50695 * 109.47246 * 294.99738 * 3 2 1 6 6 O 1.20821 * 120.00353 * 239.99656 * 5 3 2 7 7 O 1.34231 * 119.99974 * 59.72838 * 5 3 2 8 8 C 1.50701 * 109.46965 * 175.00180 * 3 2 1 9 9 O 1.21275 * 119.99897 * 359.97438 * 8 3 2 10 10 N 1.34774 * 120.00050 * 180.02562 * 8 3 2 11 11 C 1.39470 * 120.00040 * 175.80484 * 10 8 3 12 12 C 1.38603 * 119.57952 * 185.99214 * 11 10 8 13 13 C 1.40804 * 118.79589 * 179.78418 * 12 11 10 14 14 C 1.41545 * 121.00072 * 180.25783 * 13 12 11 15 15 H 1.07993 * 120.00390 * 201.34813 * 14 13 12 16 16 C 1.40030 * 119.99649 * 21.34657 * 14 13 12 17 17 N 1.30747 * 120.00216 * 12.68795 * 16 14 13 18 18 Si 1.86801 * 119.99953 * 192.69427 * 16 14 13 19 19 H 1.48501 * 109.46942 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47267 * 119.99821 * 18 16 14 21 21 H 1.48500 * 109.46958 * 239.99805 * 18 16 14 22 22 C 1.41183 * 118.00526 * 0.48333 * 13 12 11 23 23 C 1.37583 * 119.01569 * 359.75606 * 22 13 12 24 24 N 1.32084 * 121.11009 * 359.97438 * 23 22 13 25 25 H 1.08992 * 109.47763 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46741 * 300.00257 * 1 2 3 27 27 H 1.09009 * 109.46798 * 59.99545 * 1 2 3 28 28 H 1.09001 * 109.46815 * 240.00130 * 2 1 3 29 29 H 1.08996 * 109.47071 * 120.00647 * 2 1 3 30 30 H 0.96700 * 117.00508 * 180.27383 * 7 5 3 31 31 H 0.97003 * 120.00166 * 355.80847 * 10 8 3 32 32 H 1.07999 * 120.60057 * 359.97438 * 12 11 10 33 33 H 0.96994 * 120.00171 * 180.02562 * 17 16 14 34 34 H 1.08004 * 120.48861 * 179.77891 * 22 13 12 35 35 H 1.08001 * 119.45016 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6415 2.1162 -1.2877 6 8 2.4899 2.5531 -2.0287 7 8 0.3441 2.2262 -1.6140 8 6 3.5420 1.4442 0.1238 9 8 4.1449 0.3950 0.2046 10 7 4.2150 2.6116 0.1458 11 6 5.5950 2.6173 0.3481 12 6 6.2601 3.8246 0.4937 13 6 7.6526 3.8109 0.7018 14 6 8.3777 5.0160 0.8619 15 1 9.4416 5.0347 0.6776 16 6 7.7153 6.1840 1.2593 17 7 6.4934 6.1182 1.7198 18 14 8.5775 7.8362 1.1312 19 1 9.9439 7.6404 0.5836 20 1 7.8056 8.7288 0.2296 21 1 8.6685 8.4528 2.4790 22 6 8.3048 2.5594 0.7412 23 6 7.5602 1.4135 0.5813 24 7 6.2540 1.4691 0.3935 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.1376 2.6626 -2.4518 31 1 3.7397 3.4479 0.0209 32 1 5.7196 4.7586 0.4515 33 1 6.0345 6.9273 1.9947 34 1 9.3723 2.5023 0.8949 35 1 8.0519 0.4524 0.6106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604878825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:57 Heat of formation + Delta-G solvation = -95.311285 kcal Electronic energy + Delta-G solvation = -21327.859795 eV Core-core repulsion = 17904.849441 eV Total energy + Delta-G solvation = -3423.010355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.86979 -39.30094 -37.82652 -36.27673 -34.71379 -34.19176 -33.73296 -30.53349 -29.40527 -27.86173 -26.00726 -23.43693 -22.66599 -21.90311 -20.70813 -19.50756 -18.26859 -17.67266 -17.30072 -16.85522 -15.99704 -15.49078 -15.22494 -14.30873 -14.18336 -14.13146 -13.97768 -13.73943 -13.28050 -12.90630 -12.82526 -12.60234 -12.10966 -11.86988 -11.80962 -11.44304 -11.21524 -11.16103 -10.98496 -10.89842 -10.53260 -10.28234 -10.12077 -9.75669 -9.49761 -9.38790 -7.99496 -7.75059 -7.00697 -6.76506 -4.62805 2.04326 2.34188 2.76107 2.84782 3.01312 3.06886 3.23699 3.47886 3.58679 3.84216 4.53981 4.68141 4.75255 4.94164 5.11456 5.31786 5.37817 5.65866 5.71520 5.92487 6.00961 6.03076 6.28872 6.31969 6.58556 6.66324 6.81569 6.94667 7.15564 7.40460 7.47396 7.72226 7.76209 7.94952 8.20667 8.41807 8.68647 8.75825 8.83799 9.70172 10.06072 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023615 B = 0.004615 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.387974 B = 6065.237845 C = 6884.049258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.100 4.100 3 C -0.105 4.105 4 H 0.132 0.868 5 C 0.486 3.514 6 O -0.496 6.496 7 O -0.508 6.508 8 C 0.516 3.484 9 O -0.469 6.469 10 N -0.643 5.643 11 C 0.336 3.664 12 C -0.243 4.243 13 C 0.139 3.861 14 C -0.449 4.449 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.791 5.791 18 Si 0.915 3.085 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.273 1.273 22 C -0.284 4.284 23 C 0.118 3.882 24 N -0.555 5.555 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.407 0.593 31 H 0.407 0.593 32 H 0.138 0.862 33 H 0.281 0.719 34 H 0.102 0.898 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.700 -2.678 -2.502 13.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.138 4.138 3 C -0.128 4.128 4 H 0.150 0.850 5 C 0.327 3.673 6 O -0.383 6.383 7 O -0.320 6.320 8 C 0.299 3.701 9 O -0.339 6.339 10 N -0.288 5.288 11 C 0.112 3.888 12 C -0.268 4.268 13 C 0.130 3.870 14 C -0.480 4.480 15 H 0.100 0.900 16 C -0.144 4.144 17 N -0.417 5.417 18 Si 0.739 3.261 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.198 1.198 22 C -0.308 4.308 23 C -0.036 4.036 24 N -0.274 5.274 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.267 0.733 31 H 0.242 0.758 32 H 0.156 0.844 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.640 -4.194 -2.281 13.512 hybrid contribution 0.399 2.448 -0.449 2.521 sum -12.241 -1.746 -2.730 12.662 Atomic orbital electron populations 1.22025 0.94475 1.02076 1.03314 1.21300 0.96112 0.91456 1.04882 1.21504 0.95790 1.00344 0.95116 0.85026 1.23018 0.80254 0.76307 0.87737 1.90845 1.51371 1.44770 1.51280 1.84593 1.27896 1.74345 1.45207 1.19696 0.87269 0.84831 0.78336 1.90800 1.68017 1.30319 1.44754 1.43288 1.06642 1.08935 1.69921 1.18183 0.82546 0.90997 0.97090 1.21794 0.96199 0.95908 1.12940 1.17594 0.91185 0.92254 0.85937 1.19652 0.96191 0.92438 1.39759 0.89955 1.25988 0.94759 1.01511 0.92094 1.69747 1.11910 1.30645 1.29399 0.86155 0.80608 0.80591 0.78778 1.18280 1.19636 1.19845 1.21881 0.99562 0.93549 1.15844 1.21741 0.88940 0.96788 0.96167 1.67180 1.09421 1.26911 1.23934 0.92327 0.92486 0.90598 0.90766 0.89253 0.73345 0.75758 0.84433 0.90830 0.87992 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.55 37.16 0.36 -1.07 16 2 C -0.10 -1.17 4.74 -26.73 -0.13 -1.30 16 3 C -0.11 -1.39 2.67 -92.93 -0.25 -1.64 16 4 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 5 C 0.49 6.22 7.45 36.00 0.27 6.48 16 6 O -0.50 -8.36 16.07 -18.75 -0.30 -8.66 16 7 O -0.51 -4.34 10.55 -39.26 -0.41 -4.75 16 8 C 0.52 9.96 6.61 -10.99 -0.07 9.89 16 9 O -0.47 -10.77 14.18 5.56 0.08 -10.69 16 10 N -0.64 -13.40 4.85 -11.49 -0.06 -13.46 16 11 C 0.34 8.47 7.41 -154.70 -1.15 7.33 16 12 C -0.24 -6.36 8.65 -38.48 -0.33 -6.69 16 13 C 0.14 3.72 5.65 -106.55 -0.60 3.11 16 14 C -0.45 -11.68 9.15 -37.65 -0.34 -12.02 16 15 H 0.08 2.05 7.88 -52.49 -0.41 1.63 16 16 C 0.07 1.81 5.30 -17.34 -0.09 1.72 16 17 N -0.79 -19.55 10.54 55.55 0.59 -18.96 16 18 Si 0.91 18.04 29.58 -169.99 -5.03 13.01 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 C -0.28 -7.11 9.90 -38.70 -0.38 -7.49 16 23 C 0.12 2.90 11.15 -17.68 -0.20 2.70 16 24 N -0.56 -14.55 7.86 -12.52 -0.10 -14.64 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.08 0.65 5.45 -51.92 -0.28 0.37 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 1.09 7.95 -51.93 -0.41 0.68 16 30 H 0.41 1.87 9.10 45.56 0.41 2.29 16 31 H 0.41 7.41 8.22 -40.82 -0.34 7.07 16 32 H 0.14 3.59 5.85 -52.49 -0.31 3.28 16 33 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 34 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 35 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -33.53 304.61 -6.57 -40.10 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -3.01 Total: 12.43 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.92 Total: 1.03 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.43 Total: -47.06 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.64 Total: -24.11 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.53 -6.57 -40.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604878825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.210 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds