Wall clock time and date at job start Tue Mar 31 2020 00:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47314 * 2 1 4 4 H 1.08996 * 109.47271 * 55.00100 * 3 2 1 5 5 C 1.50695 * 109.47246 * 294.99738 * 3 2 1 6 6 O 1.20821 * 120.00353 * 239.99656 * 5 3 2 7 7 O 1.34231 * 119.99974 * 59.72838 * 5 3 2 8 8 C 1.50701 * 109.46965 * 175.00180 * 3 2 1 9 9 O 1.21275 * 119.99897 * 359.97438 * 8 3 2 10 10 N 1.34774 * 120.00050 * 180.02562 * 8 3 2 11 11 C 1.39470 * 120.00040 * 175.80484 * 10 8 3 12 12 C 1.38603 * 119.57952 * 185.99214 * 11 10 8 13 13 C 1.40804 * 118.79589 * 179.78418 * 12 11 10 14 14 C 1.41545 * 121.00072 * 180.25783 * 13 12 11 15 15 H 1.07993 * 120.00390 * 201.34813 * 14 13 12 16 16 C 1.40030 * 119.99649 * 21.34657 * 14 13 12 17 17 N 1.30747 * 120.00216 * 12.68795 * 16 14 13 18 18 Si 1.86801 * 119.99953 * 192.69427 * 16 14 13 19 19 H 1.48501 * 109.46942 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47267 * 119.99821 * 18 16 14 21 21 H 1.48500 * 109.46958 * 239.99805 * 18 16 14 22 22 C 1.41183 * 118.00526 * 0.48333 * 13 12 11 23 23 C 1.37583 * 119.01569 * 359.75606 * 22 13 12 24 24 N 1.32084 * 121.11009 * 359.97438 * 23 22 13 25 25 H 1.08992 * 109.47763 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46741 * 300.00257 * 1 2 3 27 27 H 1.09009 * 109.46798 * 59.99545 * 1 2 3 28 28 H 1.09001 * 109.46815 * 240.00130 * 2 1 3 29 29 H 1.08996 * 109.47071 * 120.00647 * 2 1 3 30 30 H 0.96700 * 117.00508 * 180.27383 * 7 5 3 31 31 H 0.97003 * 120.00166 * 355.80847 * 10 8 3 32 32 H 1.07999 * 120.60057 * 359.97438 * 12 11 10 33 33 H 0.96994 * 120.00171 * 180.02562 * 17 16 14 34 34 H 1.08004 * 120.48861 * 179.77891 * 22 13 12 35 35 H 1.08001 * 119.45016 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6415 2.1162 -1.2877 6 8 2.4899 2.5531 -2.0287 7 8 0.3441 2.2262 -1.6140 8 6 3.5420 1.4442 0.1238 9 8 4.1449 0.3950 0.2046 10 7 4.2150 2.6116 0.1458 11 6 5.5950 2.6173 0.3481 12 6 6.2601 3.8246 0.4937 13 6 7.6526 3.8109 0.7018 14 6 8.3777 5.0160 0.8619 15 1 9.4416 5.0347 0.6776 16 6 7.7153 6.1840 1.2593 17 7 6.4934 6.1182 1.7198 18 14 8.5775 7.8362 1.1312 19 1 9.9439 7.6404 0.5836 20 1 7.8056 8.7288 0.2296 21 1 8.6685 8.4528 2.4790 22 6 8.3048 2.5594 0.7412 23 6 7.5602 1.4135 0.5813 24 7 6.2540 1.4691 0.3935 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.1376 2.6626 -2.4518 31 1 3.7397 3.4479 0.0209 32 1 5.7196 4.7586 0.4515 33 1 6.0345 6.9273 1.9947 34 1 9.3723 2.5023 0.8949 35 1 8.0519 0.4524 0.6106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604878825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:56 Heat of formation + Delta-G solvation = -118.242043 kcal Electronic energy + Delta-G solvation = -21328.854147 eV Core-core repulsion = 17904.849441 eV Total energy + Delta-G solvation = -3424.004707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.08017 -40.82399 -39.54836 -37.24374 -36.26739 -35.57946 -35.45537 -32.46658 -30.91057 -29.21783 -27.94809 -24.52047 -24.03018 -23.77935 -22.19638 -20.97572 -19.51474 -19.24280 -18.63797 -18.07253 -17.59452 -17.01922 -16.67066 -16.05879 -15.86437 -15.73043 -15.34893 -14.90537 -14.68449 -14.39233 -14.30374 -14.17373 -13.55835 -13.15917 -12.90184 -12.79796 -12.74230 -12.68885 -12.10578 -12.07831 -11.89919 -11.87199 -11.54901 -11.52958 -11.20618 -11.14007 -9.96946 -9.66423 -8.88595 -8.62007 -6.60197 0.65682 0.98212 1.03356 1.40144 1.41334 1.55531 1.60491 1.97760 2.18884 2.24422 2.80094 3.27996 3.65312 3.74043 3.95521 4.14780 4.25345 4.46342 4.52699 4.73269 4.80805 4.88425 4.91765 5.06667 5.15949 5.23891 5.24033 5.47281 5.49835 5.57014 5.61014 5.90038 6.08848 6.40828 6.56008 6.77249 6.81538 6.89103 7.16338 7.79719 8.24787 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023615 B = 0.004615 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.387974 B = 6065.237845 C = 6884.049258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.096 4.096 3 C -0.095 4.095 4 H 0.169 0.831 5 C 0.500 3.500 6 O -0.543 6.543 7 O -0.485 6.485 8 C 0.510 3.490 9 O -0.511 6.511 10 N -0.642 5.642 11 C 0.331 3.669 12 C -0.265 4.265 13 C 0.109 3.891 14 C -0.478 4.478 15 H 0.085 0.915 16 C 0.036 3.964 17 N -0.813 5.813 18 Si 0.992 3.008 19 H -0.258 1.258 20 H -0.263 1.263 21 H -0.263 1.263 22 C -0.298 4.298 23 C 0.112 3.888 24 N -0.580 5.580 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.430 0.570 31 H 0.417 0.583 32 H 0.133 0.867 33 H 0.292 0.708 34 H 0.118 0.882 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.288 -1.635 -2.381 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.134 4.134 3 C -0.117 4.117 4 H 0.186 0.814 5 C 0.343 3.657 6 O -0.433 6.433 7 O -0.299 6.299 8 C 0.295 3.705 9 O -0.383 6.383 10 N -0.287 5.287 11 C 0.105 3.895 12 C -0.291 4.291 13 C 0.101 3.899 14 C -0.509 4.509 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.438 5.438 18 Si 0.812 3.188 19 H -0.181 1.181 20 H -0.187 1.187 21 H -0.188 1.188 22 C -0.322 4.322 23 C -0.041 4.041 24 N -0.300 5.300 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.293 0.707 31 H 0.254 0.746 32 H 0.150 0.850 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.302 -3.157 -2.167 14.806 hybrid contribution 0.806 2.095 -0.478 2.295 sum -13.496 -1.061 -2.645 13.794 Atomic orbital electron populations 1.21976 0.91572 1.03204 1.04227 1.21314 0.98378 0.89949 1.03777 1.21442 0.91018 1.02189 0.97089 0.81412 1.22735 0.81001 0.75162 0.86825 1.90850 1.52923 1.46979 1.52598 1.84521 1.24915 1.73890 1.46592 1.20699 0.89772 0.83519 0.76477 1.90767 1.69787 1.31492 1.46256 1.43382 1.05244 1.10331 1.69779 1.18465 0.84398 0.90561 0.96047 1.21789 0.96394 0.96090 1.14779 1.18040 0.91953 0.93421 0.86471 1.19955 0.96604 0.93388 1.40934 0.89702 1.26891 0.95417 1.04838 0.90951 1.69777 1.13016 1.32396 1.28640 0.85010 0.79289 0.75372 0.79163 1.18125 1.18709 1.18795 1.22076 1.00428 0.93296 1.16421 1.22229 0.88799 0.97974 0.95134 1.67315 1.10185 1.27371 1.25118 0.91204 0.91013 0.90121 0.92449 0.90002 0.70748 0.74560 0.84959 0.89644 0.86439 0.83097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.55 71.98 0.69 -1.51 16 2 C -0.10 -2.11 4.74 30.59 0.14 -1.97 16 3 C -0.10 -2.38 2.67 -12.29 -0.03 -2.41 16 4 H 0.17 2.97 8.14 -2.39 -0.02 2.95 16 5 C 0.50 11.90 7.45 71.23 0.53 12.43 16 6 O -0.54 -18.04 16.07 21.98 0.35 -17.69 16 7 O -0.49 -6.67 10.55 -51.43 -0.54 -7.22 16 8 C 0.51 19.80 6.61 87.66 0.58 20.38 16 9 O -0.51 -23.96 14.18 -3.01 -0.04 -24.00 16 10 N -0.64 -27.21 4.85 -308.66 -1.50 -28.71 16 11 C 0.33 17.15 7.41 132.75 0.98 18.14 16 12 C -0.26 -14.31 8.65 22.98 0.20 -14.12 16 13 C 0.11 6.03 5.65 -21.11 -0.12 5.91 16 14 C -0.48 -25.24 9.15 23.52 0.22 -25.03 16 15 H 0.08 4.27 7.88 -2.91 -0.02 4.25 16 16 C 0.04 1.72 5.30 85.29 0.45 2.17 16 17 N -0.81 -40.20 10.54 21.84 0.23 -39.97 16 18 Si 0.99 36.26 29.58 68.60 2.03 38.29 16 19 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 20 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 21 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 22 C -0.30 -15.24 9.90 22.84 0.23 -15.02 16 23 C 0.11 5.61 11.15 84.50 0.94 6.55 16 24 N -0.58 -31.13 7.86 -193.53 -1.52 -32.65 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.08 1.09 5.45 -2.38 -0.01 1.08 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.93 7.95 -2.39 -0.02 1.91 16 30 H 0.43 2.47 9.10 -74.06 -0.67 1.79 16 31 H 0.42 15.40 8.22 -92.71 -0.76 14.64 16 32 H 0.13 7.13 5.85 -2.91 -0.02 7.11 16 33 H 0.29 12.80 8.29 -92.71 -0.77 12.03 16 34 H 0.12 5.43 8.06 -2.91 -0.02 5.41 16 35 H 0.15 6.45 8.06 -2.91 -0.02 6.42 16 Total: -1.00 -74.76 304.61 3.54 -71.22 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.28 Total: 35.19 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 4.81 Total: 5.53 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -2.79 Total: -101.33 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -0.23 Total: -48.91 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -74.76 3.54 -71.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604878825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.019 kcal (2) G-P(sol) polarization free energy of solvation -74.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds