Wall clock time and date at job start Tue Mar 31 2020 00:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47637 * 2 1 4 4 H 1.08998 * 109.47059 * 54.99627 * 3 2 1 5 5 C 1.50701 * 109.47498 * 174.99773 * 3 2 1 6 6 H 1.08003 * 119.99996 * 119.99922 * 5 3 2 7 7 C 1.37870 * 120.00073 * 300.00025 * 5 3 2 8 8 N 1.31520 * 120.00297 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00019 * 179.97438 * 7 5 3 10 10 H 1.48488 * 109.47107 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46718 * 120.00299 * 9 7 5 12 12 H 1.48500 * 109.47177 * 240.00085 * 9 7 5 13 13 N 1.46501 * 109.46976 * 295.00184 * 3 2 1 14 14 C 1.34775 * 120.00139 * 84.99980 * 13 3 2 15 15 O 1.21506 * 119.99937 * 359.97438 * 14 13 3 16 16 C 1.48232 * 119.99957 * 180.02562 * 14 13 3 17 17 C 1.39644 * 119.65245 * 180.02562 * 16 14 13 18 18 C 1.38547 * 119.25543 * 179.97438 * 17 16 14 19 19 C 1.38591 * 118.54997 * 359.74485 * 18 17 16 20 20 C 1.39628 * 119.24145 * 0.47882 * 19 18 17 21 21 C 1.48128 * 119.65018 * 179.79252 * 20 19 18 22 22 O 1.21423 * 120.00463 * 359.72350 * 21 20 19 23 23 O 1.34674 * 119.99507 * 179.44601 * 21 20 19 24 24 N 1.32328 * 119.65063 * 359.97438 * 16 14 13 25 25 H 1.09002 * 109.46946 * 59.99907 * 1 2 3 26 26 H 1.09002 * 109.47543 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47061 * 300.00367 * 1 2 3 28 28 H 1.09002 * 109.47061 * 239.99633 * 2 1 3 29 29 H 1.09002 * 109.46946 * 120.00093 * 2 1 3 30 30 H 0.97000 * 120.00446 * 179.97438 * 8 7 5 31 31 H 0.96997 * 119.99811 * 264.99407 * 13 3 2 32 32 H 1.07999 * 120.37557 * 359.97195 * 17 16 14 33 33 H 1.07992 * 120.72438 * 180.02562 * 18 17 16 34 34 H 1.07994 * 120.37805 * 180.26701 * 19 18 17 35 35 H 0.96699 * 116.99636 * 180.26849 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1474 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0050 0.8799 1.3812 10 1 6.5988 1.5450 0.1938 11 1 6.3999 1.6155 2.6092 12 1 6.4962 -0.5192 1.4627 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3409 2.6319 -0.4327 16 6 0.0430 3.3266 -2.6338 17 6 -1.2198 3.9123 -2.7449 18 6 -1.5778 4.5295 -3.9326 19 6 -0.6612 4.5479 -4.9719 20 6 0.5828 3.9390 -4.7951 21 6 1.5676 3.9493 -5.9017 22 8 1.2893 4.4809 -6.9573 23 8 2.7737 3.3739 -5.7349 24 7 0.8935 3.3575 -3.6470 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0620 2.9496 31 1 2.2720 2.1231 -1.9977 32 1 -1.9098 3.8844 -1.9145 33 1 -2.5480 4.9902 -4.0443 34 1 -0.9077 5.0247 -5.9091 35 1 3.3843 3.4092 -6.4839 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604980447.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:01 Heat of formation + Delta-G solvation = -115.575539 kcal Electronic energy + Delta-G solvation = -21213.074203 eV Core-core repulsion = 17789.185125 eV Total energy + Delta-G solvation = -3423.889079 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02670 -40.97078 -39.88006 -37.20982 -36.98332 -34.49921 -33.79095 -33.13865 -32.28088 -29.01738 -26.55415 -26.01865 -24.76889 -23.06309 -22.03297 -21.17757 -19.62868 -19.43400 -18.34766 -17.90711 -17.19742 -17.03869 -16.95791 -16.48404 -16.33114 -16.12863 -15.18106 -14.81730 -14.60115 -14.54626 -14.29361 -13.77510 -13.45926 -13.22585 -13.13361 -12.88618 -12.70012 -12.62886 -12.24550 -12.13319 -12.06905 -11.60205 -11.27769 -11.14435 -11.04296 -10.66187 -10.52853 -10.47230 -9.66352 -8.16034 -6.32657 -0.72648 -0.22843 1.18023 1.44258 1.45643 1.57661 1.79879 1.87762 2.27114 2.47904 2.77078 2.99312 3.13511 3.69235 3.83149 3.87791 4.00856 4.32576 4.42986 4.50301 4.57522 4.74757 4.91756 4.92686 5.06901 5.25496 5.34625 5.38867 5.43107 5.53210 5.60371 5.78370 5.88316 6.15825 6.33895 6.73340 6.89184 6.96149 7.29800 7.45747 8.89556 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.005022 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.562916 B = 5573.980582 C = 6713.328898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.275 3.725 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.685 5.685 14 C 0.551 3.449 15 O -0.568 6.568 16 C 0.064 3.936 17 C -0.082 4.082 18 C -0.064 4.064 19 C -0.077 4.077 20 C 0.063 3.937 21 C 0.552 3.448 22 O -0.524 6.524 23 O -0.494 6.494 24 N -0.429 5.429 25 H 0.040 0.960 26 H 0.047 0.953 27 H 0.032 0.968 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.266 0.734 31 H 0.406 0.594 32 H 0.164 0.836 33 H 0.203 0.797 34 H 0.182 0.818 35 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 7.475 -15.804 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.332 5.332 14 C 0.336 3.664 15 O -0.449 6.449 16 C -0.078 4.078 17 C -0.103 4.103 18 C -0.090 4.090 19 C -0.097 4.097 20 C -0.076 4.076 21 C 0.395 3.605 22 O -0.413 6.413 23 O -0.307 6.307 24 N -0.144 5.144 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.241 0.759 32 H 0.181 0.819 33 H 0.220 0.780 34 H 0.199 0.801 35 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -7.383 7.062 -14.819 17.999 hybrid contribution 1.027 0.134 -0.317 1.083 sum -6.356 7.197 -15.136 17.925 Atomic orbital electron populations 1.21684 0.96673 0.99393 1.00366 1.21791 0.94064 0.98841 1.01345 1.18518 0.93888 0.89434 0.80936 0.97472 1.21558 0.91387 1.39065 1.06667 0.91618 1.25706 1.03208 0.94269 0.94916 1.70034 1.36909 1.38256 1.09845 0.85342 0.79254 0.77901 0.78117 1.18886 1.20776 1.20260 1.46247 1.15076 1.54040 1.17815 1.18270 0.82597 0.78999 0.86541 1.90734 1.52351 1.61536 1.40236 1.21232 0.93196 1.00634 0.92688 1.22679 0.94919 0.92368 1.00318 1.22144 1.01523 0.95553 0.89736 1.22632 0.90717 0.94400 1.01943 1.20285 0.94310 1.01733 0.91249 1.20373 0.81079 0.73865 0.85193 1.90886 1.79029 1.43631 1.27768 1.84694 1.25385 1.71589 1.48998 1.67376 1.34433 1.13165 0.99420 0.94057 0.93382 0.94858 0.94434 0.90563 0.92489 0.75868 0.81874 0.78019 0.80115 0.70381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.12 -6.06 5.45 30.59 0.17 -5.90 16 3 C 0.28 14.40 2.24 44.24 0.10 14.50 16 4 H 0.01 0.45 7.58 -2.39 -0.02 0.43 16 5 C -0.55 -29.79 8.73 25.60 0.22 -29.56 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.05 5.29 84.65 0.45 1.50 16 8 N -0.91 -51.98 11.29 21.45 0.24 -51.74 16 9 Si 0.97 42.63 29.54 68.60 2.03 44.66 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.68 -30.43 5.01 -448.62 -2.25 -32.68 16 14 C 0.55 22.64 6.38 86.90 0.55 23.19 16 15 O -0.57 -26.04 13.45 -3.73 -0.05 -26.09 16 16 C 0.06 2.02 6.75 42.07 0.28 2.30 16 17 C -0.08 -1.87 9.63 22.68 0.22 -1.65 16 18 C -0.06 -0.91 10.16 22.43 0.23 -0.68 16 19 C -0.08 -1.28 9.64 22.69 0.22 -1.06 16 20 C 0.06 1.54 6.75 42.02 0.28 1.82 16 21 C 0.55 12.80 8.32 70.45 0.59 13.39 16 22 O -0.52 -12.83 17.11 20.08 0.34 -12.49 16 23 O -0.49 -10.25 13.24 -55.83 -0.74 -10.99 16 24 N -0.43 -13.03 9.29 -174.12 -1.62 -14.65 16 25 H 0.04 1.79 5.64 -2.39 -0.01 1.77 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.03 1.57 7.84 -2.39 -0.02 1.56 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 4.21 5.95 -2.39 -0.01 4.19 16 30 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.41 16.99 7.87 -92.71 -0.73 16.26 16 32 H 0.16 3.50 7.64 -2.91 -0.02 3.48 16 33 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 34 H 0.18 2.04 7.64 -2.91 -0.02 2.02 16 35 H 0.43 4.24 9.11 -74.06 -0.67 3.56 16 Total: -1.00 -71.25 307.76 1.63 -69.62 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.25 Total: 21.45 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 3.92 Total: 12.91 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -3.62 Total: -99.07 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -0.45 Total: -49.57 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -71.25 1.63 -69.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980447.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.959 kcal (2) G-P(sol) polarization free energy of solvation -71.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds