Wall clock time and date at job start Tue Mar 31 2020 01:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47348 * 2 1 4 4 C 1.46503 * 119.99923 * 265.09077 * 3 2 1 5 5 C 1.50697 * 109.47131 * 262.69022 * 4 3 2 6 6 H 1.08003 * 120.00147 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00197 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99657 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99995 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47240 * 90.00476 * 9 7 5 11 11 H 1.48505 * 109.46960 * 209.99939 * 9 7 5 12 12 H 1.48493 * 109.47162 * 329.99800 * 9 7 5 13 13 C 1.34780 * 120.00312 * 85.08724 * 3 2 1 14 14 O 1.21511 * 119.99794 * 2.94977 * 13 3 2 15 15 C 1.48162 * 119.99754 * 182.95361 * 13 3 2 16 16 C 1.39251 * 119.65082 * 173.14487 * 15 13 3 17 17 C 1.39795 * 118.89950 * 179.74586 * 16 15 13 18 18 C 1.48042 * 120.89957 * 180.22689 * 17 16 15 19 19 O 1.21434 * 119.99366 * 0.02562 * 18 17 16 20 20 O 1.34669 * 120.00445 * 180.02562 * 18 17 16 21 21 C 1.39853 * 118.21003 * 0.25495 * 17 16 15 22 22 C 1.38499 * 119.18614 * 359.97438 * 21 17 16 23 23 N 1.31470 * 121.03705 * 0.02562 * 22 21 17 24 24 H 1.09000 * 109.47132 * 300.00286 * 1 2 3 25 25 H 1.08999 * 109.46830 * 60.00704 * 1 2 3 26 26 H 1.09002 * 109.46851 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47641 * 239.99615 * 2 1 3 28 28 H 1.09004 * 109.46692 * 119.99762 * 2 1 3 29 29 H 1.09002 * 109.46706 * 22.69149 * 4 3 2 30 30 H 1.08998 * 109.47456 * 142.68503 * 4 3 2 31 31 H 0.97003 * 119.99926 * 179.97438 * 8 7 5 32 32 H 1.08003 * 120.55510 * 0.02562 * 16 15 13 33 33 H 0.96695 * 116.99927 * 179.97438 * 20 18 17 34 34 H 1.08004 * 120.40991 * 179.97438 * 21 17 16 35 35 H 1.07998 * 119.48522 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3649 2.0356 -1.2641 5 6 3.8524 1.9420 -1.4869 6 1 4.4773 1.4452 -0.7594 7 6 4.4157 2.4907 -2.6194 8 7 3.6550 3.0961 -3.5050 9 14 6.2595 2.3741 -2.8959 10 1 6.5700 1.1303 -3.6454 11 1 6.7182 3.5506 -3.6775 12 1 6.9560 2.3489 -1.5847 13 6 2.1488 2.0499 1.1629 14 8 1.9126 1.4903 2.2153 15 6 2.5801 3.4674 1.1579 16 6 2.5750 4.1931 2.3464 17 6 2.9901 5.5278 2.3246 18 6 3.0071 6.3390 3.5629 19 8 2.6578 5.8461 4.6163 20 8 3.4099 7.6234 3.5212 21 6 3.3884 6.0765 1.1014 22 6 3.3585 5.2856 -0.0352 23 7 2.9624 4.0333 0.0206 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.8430 1.5418 -2.0838 30 1 2.0687 3.0838 -1.2238 31 1 4.0513 3.4824 -4.3016 32 1 2.2600 3.7313 3.2704 33 1 3.4035 8.1128 4.3551 34 1 3.7153 7.1042 1.0437 35 1 3.6654 5.7042 -0.9823 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605437884.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:35 Heat of formation + Delta-G solvation = -67.927878 kcal Electronic energy + Delta-G solvation = -21659.468116 eV Core-core repulsion = 18237.645195 eV Total energy + Delta-G solvation = -3421.822921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.71173 -39.74068 -38.29919 -36.23678 -35.30651 -32.90092 -32.47463 -31.30580 -30.05010 -26.95587 -25.39926 -24.51471 -22.93021 -22.29244 -21.64532 -19.30861 -18.09983 -17.29664 -16.67067 -16.30091 -15.76403 -15.72203 -15.49776 -14.79010 -14.60761 -14.43895 -14.12274 -13.46503 -13.33881 -13.17121 -12.80109 -12.30423 -11.97560 -11.81189 -11.73841 -11.60357 -11.39464 -10.92949 -10.90590 -10.75152 -10.46787 -10.11937 -9.80726 -9.68187 -9.44451 -8.94369 -8.66690 -8.18979 -7.66014 -6.05277 -4.03632 0.66005 1.08446 2.54529 2.78515 3.25636 3.32823 3.33674 3.39394 3.79734 4.28491 4.40494 4.70654 4.78259 5.03795 5.14611 5.24118 5.31100 5.52053 5.67043 5.79159 5.87091 5.95306 6.01952 6.10690 6.24230 6.28954 6.39346 6.62647 6.72683 6.85792 7.50615 7.72512 7.73550 7.87649 8.20333 8.26269 8.32172 8.86103 9.00008 9.55284 11.02415 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.007029 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.488247 B = 3982.552482 C = 5486.918529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 N -0.572 5.572 4 C 0.226 3.774 5 C -0.496 4.496 6 H 0.051 0.949 7 C 0.068 3.932 8 N -0.889 5.889 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.565 3.435 14 O -0.568 6.568 15 C 0.077 3.923 16 C -0.060 4.060 17 C -0.109 4.109 18 C 0.533 3.467 19 O -0.508 6.508 20 O -0.510 6.510 21 C -0.104 4.104 22 C 0.086 3.914 23 N -0.353 5.353 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.083 0.917 31 H 0.261 0.739 32 H 0.154 0.846 33 H 0.414 0.586 34 H 0.147 0.853 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 6.714 6.748 9.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.301 5.301 4 C 0.107 3.893 5 C -0.535 4.535 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.352 3.648 14 O -0.449 6.449 15 C -0.061 4.061 16 C -0.081 4.081 17 C -0.117 4.117 18 C 0.377 3.623 19 O -0.396 6.396 20 O -0.322 6.322 21 C -0.125 4.125 22 C -0.072 4.072 23 N -0.064 5.064 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.171 0.829 33 H 0.273 0.727 34 H 0.165 0.835 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.511 5.629 6.250 8.778 hybrid contribution 1.287 0.895 0.905 1.810 sum -1.225 6.524 7.155 9.760 Atomic orbital electron populations 1.22114 0.96627 1.01393 1.02069 1.21346 0.93579 0.83492 1.02671 1.48290 1.60284 1.12877 1.08628 1.20157 0.95830 0.95457 0.77858 1.21286 0.92437 1.34737 1.05059 0.93043 1.24756 0.97306 0.95325 0.95947 1.69924 1.34822 1.37408 1.10684 0.86719 0.86250 0.77623 0.78131 1.20791 1.21183 1.20183 1.17734 0.78240 0.84807 0.84040 1.90692 1.53992 1.68717 1.31461 1.21300 1.00020 0.95757 0.89000 1.22145 0.93986 0.91767 1.00223 1.19153 1.06884 0.93970 0.91742 1.20786 0.73024 0.79981 0.88506 1.90898 1.44586 1.72185 1.31976 1.84545 1.79907 1.24843 1.42862 1.22718 0.95828 1.01617 0.92343 1.23219 0.95957 0.89658 0.98415 1.68748 1.02248 1.10234 1.25202 0.92690 0.92513 0.92261 0.90106 0.91112 0.95590 0.89986 0.92970 0.82855 0.72733 0.83550 0.81433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.20 37.16 0.38 -2.19 16 2 C 0.11 2.06 6.07 -4.04 -0.02 2.04 16 3 N -0.57 -12.30 2.49 -176.05 -0.44 -12.73 16 4 C 0.23 5.34 4.74 -5.19 -0.02 5.32 16 5 C -0.50 -12.70 7.93 -34.44 -0.27 -12.98 16 6 H 0.05 1.39 7.81 -52.48 -0.41 0.98 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -23.53 13.29 55.43 0.74 -22.79 16 9 Si 0.88 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.57 12.32 7.55 -12.18 -0.09 12.23 16 14 O -0.57 -12.98 15.98 5.36 0.09 -12.89 16 15 C 0.08 1.56 6.62 -83.06 -0.55 1.01 16 16 C -0.06 -1.06 9.19 -38.62 -0.36 -1.42 16 17 C -0.11 -1.64 5.91 -104.69 -0.62 -2.26 16 18 C 0.53 7.25 8.30 34.75 0.29 7.54 16 19 O -0.51 -8.26 17.23 -19.22 -0.33 -8.59 16 20 O -0.51 -4.87 12.78 -40.41 -0.52 -5.39 16 21 C -0.10 -1.43 9.71 -38.88 -0.38 -1.81 16 22 C 0.09 1.41 11.17 -17.61 -0.20 1.22 16 23 N -0.35 -7.13 4.93 -9.85 -0.05 -7.18 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 28 H 0.07 1.30 7.53 -51.93 -0.39 0.91 16 29 H 0.03 0.65 8.02 -51.93 -0.42 0.23 16 30 H 0.08 2.00 5.26 -52.18 -0.27 1.73 16 31 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.15 2.75 7.34 -52.48 -0.39 2.36 16 33 H 0.41 1.95 9.11 45.56 0.42 2.36 16 34 H 0.15 1.53 7.70 -52.48 -0.40 1.13 16 35 H 0.17 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 312.03 15.07 4.70 4.70 Total: -1.00 -31.14 312.03 -5.88 -37.02 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -3.11 Total: 2.15 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -1.94 Total: 10.36 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.25 Total: -42.70 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.76 Total: -26.88 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.14 -5.88 -37.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605437884.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.907 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds