Wall clock time and date at job start Tue Mar 31 2020 01:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47348 * 2 1 4 4 C 1.46503 * 119.99923 * 265.09077 * 3 2 1 5 5 C 1.50697 * 109.47131 * 262.69022 * 4 3 2 6 6 H 1.08003 * 120.00147 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00197 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99657 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99995 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47240 * 90.00476 * 9 7 5 11 11 H 1.48505 * 109.46960 * 209.99939 * 9 7 5 12 12 H 1.48493 * 109.47162 * 329.99800 * 9 7 5 13 13 C 1.34780 * 120.00312 * 85.08724 * 3 2 1 14 14 O 1.21511 * 119.99794 * 2.94977 * 13 3 2 15 15 C 1.48162 * 119.99754 * 182.95361 * 13 3 2 16 16 C 1.39251 * 119.65082 * 173.14487 * 15 13 3 17 17 C 1.39795 * 118.89950 * 179.74586 * 16 15 13 18 18 C 1.48042 * 120.89957 * 180.22689 * 17 16 15 19 19 O 1.21434 * 119.99366 * 0.02562 * 18 17 16 20 20 O 1.34669 * 120.00445 * 180.02562 * 18 17 16 21 21 C 1.39853 * 118.21003 * 0.25495 * 17 16 15 22 22 C 1.38499 * 119.18614 * 359.97438 * 21 17 16 23 23 N 1.31470 * 121.03705 * 0.02562 * 22 21 17 24 24 H 1.09000 * 109.47132 * 300.00286 * 1 2 3 25 25 H 1.08999 * 109.46830 * 60.00704 * 1 2 3 26 26 H 1.09002 * 109.46851 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47641 * 239.99615 * 2 1 3 28 28 H 1.09004 * 109.46692 * 119.99762 * 2 1 3 29 29 H 1.09002 * 109.46706 * 22.69149 * 4 3 2 30 30 H 1.08998 * 109.47456 * 142.68503 * 4 3 2 31 31 H 0.97003 * 119.99926 * 179.97438 * 8 7 5 32 32 H 1.08003 * 120.55510 * 0.02562 * 16 15 13 33 33 H 0.96695 * 116.99927 * 179.97438 * 20 18 17 34 34 H 1.08004 * 120.40991 * 179.97438 * 21 17 16 35 35 H 1.07998 * 119.48522 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3649 2.0356 -1.2641 5 6 3.8524 1.9420 -1.4869 6 1 4.4773 1.4452 -0.7594 7 6 4.4157 2.4907 -2.6194 8 7 3.6550 3.0961 -3.5050 9 14 6.2595 2.3741 -2.8959 10 1 6.5700 1.1303 -3.6454 11 1 6.7182 3.5506 -3.6775 12 1 6.9560 2.3489 -1.5847 13 6 2.1488 2.0499 1.1629 14 8 1.9126 1.4903 2.2153 15 6 2.5801 3.4674 1.1579 16 6 2.5750 4.1931 2.3464 17 6 2.9901 5.5278 2.3246 18 6 3.0071 6.3390 3.5629 19 8 2.6578 5.8461 4.6163 20 8 3.4099 7.6234 3.5212 21 6 3.3884 6.0765 1.1014 22 6 3.3585 5.2856 -0.0352 23 7 2.9624 4.0333 0.0206 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.8430 1.5418 -2.0838 30 1 2.0687 3.0838 -1.2238 31 1 4.0513 3.4824 -4.3016 32 1 2.2600 3.7313 3.2704 33 1 3.4035 8.1128 4.3551 34 1 3.7153 7.1042 1.0437 35 1 3.6654 5.7042 -0.9823 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605437884.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:34 Heat of formation + Delta-G solvation = -87.963505 kcal Electronic energy + Delta-G solvation = -21660.336925 eV Core-core repulsion = 18237.645195 eV Total energy + Delta-G solvation = -3422.691731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99900 -41.02043 -39.78730 -37.21089 -37.00107 -34.61431 -33.98733 -32.72328 -31.53035 -28.81179 -26.65417 -25.92086 -24.79158 -23.68299 -22.87171 -20.69861 -19.21731 -18.78209 -18.29367 -17.95215 -17.19201 -16.85818 -16.81357 -16.37989 -16.21997 -16.07589 -15.51168 -14.86036 -14.62381 -14.44041 -14.36688 -14.11166 -13.53939 -13.30256 -13.10022 -12.92503 -12.69905 -12.66285 -12.60058 -12.11551 -11.98867 -11.78816 -11.61719 -11.17596 -11.09871 -10.50040 -10.29693 -9.82447 -9.38031 -8.01480 -6.06537 -0.57309 -0.27730 1.35589 1.43027 1.46759 1.53872 1.75321 1.85526 2.27126 2.51368 2.85945 3.25158 3.31583 3.58831 3.80024 3.84610 3.97753 4.17891 4.36695 4.39063 4.54168 4.68031 4.72067 4.84243 4.87332 4.99565 5.11999 5.27409 5.40398 5.45660 5.60660 5.92750 5.95759 6.31117 6.52911 6.82896 6.87144 7.00397 7.25622 7.56447 9.05679 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.007029 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.488247 B = 3982.552482 C = 5486.918529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.104 3.896 3 N -0.579 5.579 4 C 0.242 3.758 5 C -0.502 4.502 6 H 0.031 0.969 7 C 0.038 3.962 8 N -0.911 5.911 9 Si 0.936 3.064 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.284 1.284 13 C 0.557 3.443 14 O -0.588 6.588 15 C 0.052 3.948 16 C -0.063 4.063 17 C -0.107 4.107 18 C 0.547 3.453 19 O -0.538 6.538 20 O -0.490 6.490 21 C -0.067 4.067 22 C 0.078 3.922 23 N -0.389 5.389 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.008 0.992 30 H 0.079 0.921 31 H 0.263 0.737 32 H 0.144 0.856 33 H 0.439 0.561 34 H 0.193 0.807 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 8.757 6.974 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 N -0.307 5.307 4 C 0.122 3.878 5 C -0.542 4.542 6 H 0.049 0.951 7 C -0.162 4.162 8 N -0.551 5.551 9 Si 0.763 3.237 10 H -0.209 1.209 11 H -0.201 1.201 12 H -0.209 1.209 13 C 0.345 3.655 14 O -0.471 6.471 15 C -0.085 4.085 16 C -0.085 4.085 17 C -0.116 4.116 18 C 0.391 3.609 19 O -0.429 6.429 20 O -0.304 6.304 21 C -0.087 4.087 22 C -0.082 4.082 23 N -0.101 5.101 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.026 0.974 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.162 0.838 33 H 0.302 0.698 34 H 0.210 0.790 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.791 7.681 6.482 10.208 hybrid contribution 1.084 0.404 0.907 1.470 sum -0.706 8.085 7.389 10.975 Atomic orbital electron populations 1.22012 0.94379 1.03268 1.01314 1.21551 0.95464 0.82177 1.02609 1.48340 1.60440 1.13905 1.08000 1.19832 0.94628 0.95260 0.78083 1.21254 0.93104 1.34952 1.04847 0.95112 1.25221 1.00277 0.95043 0.95677 1.69992 1.36022 1.38046 1.11016 0.85923 0.82460 0.77758 0.77527 1.20852 1.20098 1.20930 1.18127 0.77841 0.85837 0.83709 1.90653 1.55065 1.69535 1.31853 1.21045 1.02276 0.95197 0.90015 1.22058 0.94360 0.93068 0.98974 1.19334 1.05812 0.93167 0.93313 1.20364 0.72485 0.80916 0.87128 1.90907 1.46054 1.73157 1.32814 1.84471 1.78583 1.22662 1.44728 1.23055 0.92433 1.02873 0.90339 1.23539 0.95718 0.88836 1.00073 1.68510 1.03506 1.12327 1.25728 0.93844 0.92711 0.89063 0.89813 0.91425 0.97381 0.90405 0.92756 0.83821 0.69770 0.79032 0.80165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 10.20 71.98 0.73 -4.01 16 2 C 0.10 3.92 6.07 86.38 0.52 4.44 16 3 N -0.58 -25.71 2.49 -829.21 -2.06 -27.77 16 4 C 0.24 11.76 4.74 85.63 0.41 12.17 16 5 C -0.50 -26.22 7.93 25.60 0.20 -26.01 16 6 H 0.03 1.70 7.81 -2.91 -0.02 1.68 16 7 C 0.04 1.94 5.46 84.66 0.46 2.40 16 8 N -0.91 -48.07 13.29 21.45 0.28 -47.79 16 9 Si 0.94 41.58 29.54 68.60 2.03 43.61 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.56 25.16 7.55 86.88 0.66 25.82 16 14 O -0.59 -27.87 15.98 -3.75 -0.06 -27.93 16 15 C 0.05 2.11 6.62 41.90 0.28 2.39 16 16 C -0.06 -2.24 9.19 22.89 0.21 -2.03 16 17 C -0.11 -3.01 5.91 -19.91 -0.12 -3.13 16 18 C 0.55 13.26 8.30 70.42 0.58 13.85 16 19 O -0.54 -16.57 17.23 20.05 0.35 -16.23 16 20 O -0.49 -7.10 12.78 -55.78 -0.71 -7.81 16 21 C -0.07 -1.60 9.71 22.72 0.22 -1.38 16 22 C 0.08 2.43 11.17 84.81 0.95 3.38 16 23 N -0.39 -15.77 4.93 -185.08 -0.91 -16.68 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.08 3.04 8.03 -2.39 -0.02 3.02 16 28 H 0.07 2.55 7.53 -2.38 -0.02 2.54 16 29 H 0.01 0.42 8.02 -2.39 -0.02 0.40 16 30 H 0.08 3.90 5.26 -2.88 -0.02 3.89 16 31 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 32 H 0.14 5.30 7.34 -2.91 -0.02 5.27 16 33 H 0.44 2.08 9.11 -74.06 -0.67 1.40 16 34 H 0.19 2.89 7.70 -2.91 -0.02 2.87 16 35 H 0.18 5.10 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -68.21 312.03 4.47 -63.73 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.46 Total: 9.00 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: 5.11 Total: 27.88 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -2.69 Total: -92.24 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -0.43 Total: -51.98 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -68.21 4.47 -63.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605437884.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.229 kcal (2) G-P(sol) polarization free energy of solvation -68.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds