Wall clock time and date at job start Mon Mar 30 2020 23:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47207 * 2 1 4 4 C 1.38599 * 119.55067 * 126.09748 * 3 2 1 5 5 C 1.38617 * 119.37049 * 179.97438 * 4 3 2 6 6 C 1.38586 * 118.49847 * 0.27817 * 5 4 3 7 7 C 1.39366 * 119.05400 * 359.47826 * 6 5 4 8 8 C 1.48010 * 119.73213 * 180.22924 * 7 6 5 9 9 O 1.21563 * 119.99467 * 8.03975 * 8 7 6 10 10 N 1.34770 * 119.99865 * 188.04145 * 8 7 6 11 11 C 1.36786 * 119.99612 * 177.91549 * 10 8 7 12 12 H 1.07997 * 120.00163 * 326.94618 * 11 10 8 13 13 C 1.39112 * 120.00019 * 146.94749 * 11 10 8 14 14 N 1.31319 * 120.00019 * 21.59711 * 13 11 10 15 15 Si 1.86798 * 120.00135 * 201.59345 * 13 11 10 16 16 H 1.48499 * 109.47049 * 90.00041 * 15 13 11 17 17 H 1.48497 * 109.47389 * 209.99898 * 15 13 11 18 18 H 1.48495 * 109.47156 * 330.00389 * 15 13 11 19 19 C 1.46501 * 120.00555 * 357.90990 * 10 8 7 20 20 C 1.50697 * 109.47305 * 272.21717 * 19 10 8 21 21 O 1.20820 * 120.00176 * 8.49439 * 20 19 10 22 22 O 1.34225 * 119.99879 * 188.49769 * 20 19 10 23 23 N 1.31507 * 119.54615 * 306.11812 * 3 2 1 24 24 H 1.08995 * 109.47646 * 306.08341 * 1 2 3 25 25 H 1.09007 * 109.47127 * 66.07965 * 1 2 3 26 26 H 1.08997 * 109.47167 * 186.07601 * 1 2 3 27 27 H 1.08995 * 109.47707 * 239.99694 * 2 1 3 28 28 H 1.08999 * 109.47290 * 119.99576 * 2 1 3 29 29 H 1.08006 * 120.30862 * 0.02562 * 4 3 2 30 30 H 1.08003 * 120.75066 * 180.02562 * 5 4 3 31 31 H 1.07997 * 120.46934 * 179.71970 * 6 5 4 32 32 H 0.97004 * 120.00475 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.46446 * 32.21587 * 19 10 8 34 34 H 1.08999 * 109.47029 * 152.21399 * 19 10 8 35 35 H 0.96701 * 116.99939 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9299 1.8285 0.9742 5 6 3.3899 3.1360 0.9704 6 6 2.9273 3.9969 -0.0122 7 6 2.0289 3.5176 -0.9638 8 6 1.5291 4.4226 -2.0229 9 8 2.0093 5.5321 -2.1507 10 7 0.5418 4.0167 -2.8455 11 6 0.0506 4.8683 -3.7966 12 1 0.0102 5.9298 -3.6019 13 6 -0.3968 4.3670 -5.0147 14 7 -0.7505 3.1064 -5.1159 15 14 -0.4946 5.4871 -6.5064 16 1 0.7935 5.4428 -7.2440 17 1 -1.5911 5.0303 -7.3975 18 1 -0.7637 6.8787 -6.0637 19 6 -0.0054 2.6634 -2.7213 20 6 0.8079 1.7135 -3.5622 21 8 1.8346 2.0893 -4.0764 22 8 0.3916 0.4499 -3.7402 23 7 1.6127 2.2570 -0.9242 24 1 -0.3634 0.6052 0.8305 25 1 -0.3634 0.4167 -0.9395 26 1 -0.3633 -1.0219 0.1088 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2682 1.1336 1.7287 30 1 4.0899 3.4774 1.7187 31 1 3.2613 5.0235 -0.0424 32 1 -1.0621 2.7567 -5.9654 33 1 0.0341 2.3500 -1.6780 34 1 -1.0402 2.6570 -3.0636 35 1 0.9468 -0.1223 -4.2873 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605825775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:47 Heat of formation + Delta-G solvation = -91.345675 kcal Electronic energy + Delta-G solvation = -22704.695185 eV Core-core repulsion = 19281.856792 eV Total energy + Delta-G solvation = -3422.838393 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.83572 -40.63912 -39.62428 -37.05766 -36.35807 -35.00792 -34.20331 -33.06072 -30.82078 -29.41438 -27.41212 -25.47877 -24.82992 -22.75361 -22.37512 -21.23669 -19.23620 -18.68983 -18.31899 -17.68293 -17.16670 -16.83174 -16.63274 -16.18826 -15.89688 -15.77020 -15.38567 -15.06738 -14.58487 -14.47369 -14.05694 -13.73672 -13.62014 -13.23099 -13.11463 -12.92448 -12.72699 -12.46870 -12.19060 -12.15824 -12.12453 -11.79180 -11.44737 -10.95399 -10.87823 -10.77740 -10.08852 -9.93303 -9.77892 -8.53338 -6.12947 -0.20687 0.31741 1.29565 1.37034 1.46331 1.82265 1.96576 2.15183 2.55163 2.83631 2.90221 3.09970 3.28446 3.74884 3.93862 4.14003 4.19103 4.39781 4.47942 4.57250 4.64474 4.85023 4.93657 5.00485 5.04255 5.13907 5.16225 5.21565 5.32121 5.32708 5.56566 5.77138 5.99148 6.01550 6.32929 6.87358 7.01763 7.19902 7.50928 7.84325 8.46644 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021162 B = 0.007655 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.831399 B = 3657.082603 C = 4596.041801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C 0.107 3.893 4 C -0.146 4.146 5 C -0.065 4.065 6 C -0.142 4.142 7 C 0.076 3.924 8 C 0.483 3.517 9 O -0.618 6.618 10 N -0.418 5.418 11 C -0.353 4.353 12 H 0.082 0.918 13 C 0.016 3.984 14 N -0.875 5.875 15 Si 0.985 3.015 16 H -0.287 1.287 17 H -0.260 1.260 18 H -0.262 1.262 19 C 0.131 3.869 20 C 0.531 3.469 21 O -0.580 6.580 22 O -0.512 6.512 23 N -0.482 5.482 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.184 0.816 30 H 0.181 0.819 31 H 0.134 0.866 32 H 0.279 0.721 33 H 0.147 0.853 34 H 0.106 0.894 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.322 -10.922 12.310 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.033 4.033 4 C -0.166 4.166 5 C -0.090 4.090 6 C -0.164 4.164 7 C -0.060 4.060 8 C 0.274 3.726 9 O -0.506 6.506 10 N -0.134 5.134 11 C -0.480 4.480 12 H 0.100 0.900 13 C -0.188 4.188 14 N -0.512 5.512 15 Si 0.808 3.192 16 H -0.214 1.214 17 H -0.184 1.184 18 H -0.187 1.187 19 C 0.006 3.994 20 C 0.375 3.625 21 O -0.472 6.472 22 O -0.323 6.323 23 N -0.196 5.196 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.136 0.864 29 H 0.201 0.799 30 H 0.199 0.801 31 H 0.151 0.849 32 H 0.089 0.911 33 H 0.163 0.837 34 H 0.124 0.876 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 1.837 -10.425 11.543 15.662 hybrid contribution 0.865 0.827 -1.178 1.680 sum 2.702 -9.598 10.365 14.382 Atomic orbital electron populations 1.21698 0.94254 1.02771 1.01611 1.20606 0.96985 0.88363 1.04527 1.22217 0.93630 0.96983 0.90457 1.22586 0.97029 0.97228 0.99750 1.21995 0.97564 0.92836 0.96644 1.22133 0.97001 1.02259 0.94990 1.21132 0.97686 0.91380 0.95792 1.18470 0.81178 0.87488 0.85514 1.90537 1.60785 1.23575 1.75663 1.43335 1.29321 1.11520 1.29251 1.19602 1.42265 0.91374 0.94775 0.90028 1.26183 0.94027 0.98114 1.00479 1.69779 1.38722 1.15528 1.27157 0.85077 0.77780 0.78938 0.77362 1.21372 1.18434 1.18656 1.21598 0.97157 0.79851 1.00755 1.23357 0.82063 0.80303 0.76728 1.90545 1.28449 1.77736 1.50432 1.84452 1.56020 1.23376 1.68451 1.67670 1.24382 1.02731 1.24829 0.92874 0.93971 0.90043 0.90633 0.86406 0.79858 0.80149 0.84854 0.91072 0.83726 0.87608 0.73530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.69 71.98 0.70 -2.44 16 2 C -0.07 -1.37 6.33 29.84 0.19 -1.18 16 3 C 0.11 2.98 6.19 42.69 0.26 3.25 16 4 C -0.15 -3.08 9.72 22.45 0.22 -2.86 16 5 C -0.07 -1.54 10.17 22.44 0.23 -1.31 16 6 C -0.14 -5.07 9.63 22.62 0.22 -4.85 16 7 C 0.08 3.38 6.62 41.86 0.28 3.66 16 8 C 0.48 27.03 7.43 86.84 0.65 27.67 16 9 O -0.62 -38.09 16.18 -3.91 -0.06 -38.15 16 10 N -0.42 -23.74 2.17 -642.74 -1.39 -25.13 16 11 C -0.35 -21.14 8.98 84.13 0.76 -20.38 16 12 H 0.08 5.07 7.70 -2.91 -0.02 5.05 16 13 C 0.02 0.89 5.43 84.98 0.46 1.35 16 14 N -0.87 -47.08 8.87 21.69 0.19 -46.88 16 15 Si 0.99 44.97 29.61 68.60 2.03 47.00 16 16 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 19 C 0.13 6.45 4.80 85.63 0.41 6.86 16 20 C 0.53 25.68 5.20 71.23 0.37 26.06 16 21 O -0.58 -32.97 17.07 21.98 0.38 -32.59 16 22 O -0.51 -19.57 13.42 -51.37 -0.69 -20.26 16 23 N -0.48 -18.56 4.79 -173.11 -0.83 -19.39 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.04 1.17 6.99 -2.38 -0.02 1.16 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.12 1.40 7.87 -2.39 -0.02 1.39 16 29 H 0.18 1.99 7.95 -2.91 -0.02 1.97 16 30 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.13 4.86 7.66 -2.91 -0.02 4.84 16 32 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.15 6.42 3.84 -15.14 -0.06 6.36 16 34 H 0.11 5.44 6.55 -2.39 -0.02 5.42 16 35 H 0.41 11.94 9.10 -74.06 -0.67 11.26 16 Total: -1.00 -80.97 302.06 4.78 -76.19 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.42 Total: 23.39 kcal Atomic # 6 Polarization: 31.09 SS G_CDS: 4.74 Total: 35.82 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -2.03 Total: -91.40 kcal Atomic # 8 Polarization: -90.63 SS G_CDS: -0.38 Total: -91.01 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -80.97 4.78 -76.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605825775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.155 kcal (2) G-P(sol) polarization free energy of solvation -80.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds