Wall clock time and date at job start Mon Mar 30 2020 23:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47322 * 2 1 4 4 C 1.38126 * 120.50008 * 264.99928 * 3 2 1 5 5 N 1.31832 * 120.90024 * 179.69340 * 4 3 2 6 6 C 1.31854 * 122.06474 * 0.27947 * 5 4 3 7 7 C 1.38081 * 120.90799 * 0.02562 * 6 5 4 8 8 C 1.39888 * 120.50806 * 85.26300 * 3 2 1 9 9 C 1.47992 * 120.92688 * 0.04144 * 8 3 2 10 10 O 1.21557 * 120.00283 * 52.99078 * 9 8 3 11 11 N 1.34781 * 119.99760 * 232.98443 * 9 8 3 12 12 C 1.36789 * 120.00443 * 4.27424 * 11 9 8 13 13 H 1.08005 * 119.99533 * 13.72150 * 12 11 9 14 14 C 1.39104 * 120.00387 * 193.72674 * 12 11 9 15 15 N 1.31319 * 120.00091 * 10.25923 * 14 12 11 16 16 Si 1.86797 * 120.00040 * 190.26615 * 14 12 11 17 17 H 1.48502 * 109.47410 * 89.99563 * 16 14 12 18 18 H 1.48505 * 109.47066 * 209.99978 * 16 14 12 19 19 H 1.48498 * 109.47021 * 329.99661 * 16 14 12 20 20 C 1.46504 * 119.99951 * 184.27012 * 11 9 8 21 21 C 1.50693 * 109.47183 * 89.86743 * 20 11 9 22 22 O 1.20834 * 120.00048 * 0.02562 * 21 20 11 23 23 O 1.34223 * 120.00392 * 179.97438 * 21 20 11 24 24 H 1.09000 * 109.47147 * 60.00311 * 1 2 3 25 25 H 1.09004 * 109.46890 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47295 * 300.00479 * 1 2 3 27 27 H 1.09002 * 109.47104 * 240.00027 * 2 1 3 28 28 H 1.09000 * 109.47147 * 119.99689 * 2 1 3 29 29 H 1.08001 * 119.55150 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.54684 * 179.97438 * 6 5 4 31 31 H 1.07997 * 120.50437 * 179.97438 * 7 6 5 32 32 H 0.96992 * 120.00429 * 180.02562 * 15 14 12 33 33 H 1.08995 * 109.47364 * 209.87268 * 20 11 9 34 34 H 1.09008 * 109.46739 * 329.86942 * 20 11 9 35 35 H 0.96695 * 117.00535 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3639 2.0472 -1.1856 5 7 2.7984 3.2918 -1.1953 6 6 2.9421 3.9917 -0.0871 7 6 2.6401 3.4421 1.1431 8 6 2.1753 2.1235 1.2011 9 6 1.8390 1.4918 2.4965 10 8 2.3292 0.4205 2.7957 11 7 0.9893 2.1046 3.3446 12 6 0.3702 3.2660 2.9722 13 1 0.3811 3.5761 1.9376 14 6 -0.2735 4.0479 3.9258 15 7 -0.1195 3.7849 5.2031 16 14 -1.3572 5.4717 3.3894 17 1 -2.7501 4.9913 3.2041 18 1 -1.3332 6.5312 4.4297 19 1 -0.8497 6.0246 2.1081 20 6 0.7288 1.5265 4.6653 21 6 1.7211 2.0746 5.6582 22 8 2.5597 2.8672 5.2995 23 8 1.6729 1.6833 6.9412 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2614 1.5115 -2.1178 30 1 3.3019 5.0085 -0.1423 31 1 2.7606 4.0212 2.0467 32 1 -0.5686 4.3298 5.8681 33 1 -0.2819 1.7841 4.9817 34 1 0.8280 0.4422 4.6133 35 1 2.3298 2.0624 7.5409 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605841785.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:30 Heat of formation + Delta-G solvation = -101.996566 kcal Electronic energy + Delta-G solvation = -22463.909024 eV Core-core repulsion = 19040.608774 eV Total energy + Delta-G solvation = -3423.300250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76876 -40.85835 -39.62532 -37.18801 -36.48244 -35.39910 -33.71010 -33.09145 -30.64659 -29.76566 -27.03462 -25.44630 -24.92901 -22.96935 -22.13723 -21.30800 -19.61401 -18.87215 -18.26121 -17.65612 -17.17692 -16.93178 -16.30103 -16.28975 -16.19000 -15.65025 -15.12205 -14.94664 -14.55069 -14.52854 -14.44975 -13.75522 -13.49426 -13.41368 -13.24665 -12.93643 -12.70600 -12.58792 -12.19596 -12.16201 -12.13109 -11.88171 -11.59759 -11.09058 -11.03573 -10.51566 -10.20086 -10.04260 -9.83841 -8.45047 -6.02705 0.01285 0.21359 1.37286 1.43939 1.54584 1.71296 1.84749 2.16319 2.45613 2.76997 2.87197 3.15328 3.55837 3.86160 3.94608 3.95925 4.12092 4.39207 4.42108 4.50613 4.52167 4.78556 4.80069 4.82824 4.96415 4.97539 5.05057 5.21754 5.30949 5.38035 5.48543 5.57787 5.75822 5.90692 6.24772 6.95412 6.98532 7.28681 7.38962 7.71180 8.58757 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.008220 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.193090 B = 3405.416242 C = 4156.866919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.106 4.106 4 C 0.096 3.904 5 N -0.488 5.488 6 C 0.084 3.916 7 C -0.134 4.134 8 C -0.066 4.066 9 C 0.495 3.505 10 O -0.619 6.619 11 N -0.422 5.422 12 C -0.336 4.336 13 H 0.106 0.894 14 C 0.002 3.998 15 N -0.898 5.898 16 Si 0.994 3.006 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.150 3.850 21 C 0.510 3.490 22 O -0.558 6.558 23 O -0.520 6.520 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.192 0.808 30 H 0.183 0.817 31 H 0.124 0.876 32 H 0.277 0.723 33 H 0.135 0.865 34 H 0.087 0.913 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 -2.003 -6.086 6.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.062 4.062 5 N -0.197 5.197 6 C -0.071 4.071 7 C -0.155 4.155 8 C -0.077 4.077 9 C 0.285 3.715 10 O -0.508 6.508 11 N -0.138 5.138 12 C -0.463 4.463 13 H 0.124 0.876 14 C -0.200 4.200 15 N -0.538 5.538 16 Si 0.817 3.183 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.188 1.188 20 C 0.025 3.975 21 C 0.353 3.647 22 O -0.448 6.448 23 O -0.332 6.332 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.209 0.791 30 H 0.200 0.800 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.153 0.847 34 H 0.105 0.895 35 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.040 -1.979 -6.867 7.222 hybrid contribution -0.102 0.848 1.873 2.059 sum -1.142 -1.131 -4.994 5.246 Atomic orbital electron populations 1.21653 0.93877 1.02519 1.01351 1.20640 0.96885 0.90885 1.04270 1.21236 0.98838 0.98464 0.92367 1.23044 0.94792 0.90722 0.97596 1.67602 1.12643 1.08088 1.31321 1.22948 0.96853 1.00786 0.86533 1.22325 0.98596 0.94142 1.00426 1.20215 0.98920 0.94837 0.93754 1.18358 0.80886 0.86076 0.86136 1.90571 1.57043 1.24246 1.78928 1.43450 1.36715 1.22260 1.11356 1.19953 1.31301 0.99177 0.95866 0.87634 1.26021 0.98680 1.00760 0.94495 1.69663 1.42152 1.41053 1.00951 0.84887 0.78348 0.76901 0.78127 1.19162 1.20966 1.18803 1.20677 0.99390 0.96279 0.81172 1.23553 0.81918 0.77449 0.81806 1.90529 1.39460 1.34510 1.80271 1.84442 1.59397 1.68455 1.20864 0.91192 0.90568 0.95502 0.87636 0.91608 0.79086 0.79991 0.85799 0.91288 0.84721 0.89500 0.72883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.89 71.98 0.71 -3.19 16 2 C -0.09 -2.75 5.65 29.85 0.17 -2.58 16 3 C -0.11 -3.73 5.19 -19.49 -0.10 -3.83 16 4 C 0.10 2.86 10.84 84.67 0.92 3.78 16 5 N -0.49 -15.72 10.34 -196.04 -2.03 -17.75 16 6 C 0.08 2.79 11.17 84.65 0.95 3.73 16 7 C -0.13 -5.36 8.00 22.64 0.18 -5.18 16 8 C -0.07 -2.83 4.75 -19.88 -0.09 -2.92 16 9 C 0.49 24.27 6.64 86.83 0.58 24.85 16 10 O -0.62 -32.57 14.75 -3.89 -0.06 -32.63 16 11 N -0.42 -20.91 2.11 -642.74 -1.35 -22.26 16 12 C -0.34 -16.40 8.31 84.13 0.70 -15.70 16 13 H 0.11 5.05 5.94 -2.91 -0.02 5.03 16 14 C 0.00 0.08 5.20 84.98 0.44 0.52 16 15 N -0.90 -44.03 8.38 21.69 0.18 -43.85 16 16 Si 0.99 38.30 29.57 68.60 2.03 40.33 16 17 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 18 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 19 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 20 C 0.15 7.11 5.28 85.63 0.45 7.56 16 21 C 0.51 24.39 6.31 71.23 0.45 24.84 16 22 O -0.56 -30.42 16.96 21.94 0.37 -30.05 16 23 O -0.52 -20.03 13.42 -51.35 -0.69 -20.72 16 24 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.03 0.93 8.13 -2.39 -0.02 0.91 16 27 H 0.11 2.42 8.06 -2.39 -0.02 2.40 16 28 H 0.07 2.48 6.00 -2.39 -0.01 2.46 16 29 H 0.19 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.18 4.76 8.06 -2.91 -0.02 4.73 16 31 H 0.12 5.40 7.65 -2.91 -0.02 5.38 16 32 H 0.28 12.97 8.31 -92.71 -0.77 12.20 16 33 H 0.14 6.37 6.17 -2.39 -0.01 6.36 16 34 H 0.09 3.94 7.37 -2.38 -0.02 3.92 16 35 H 0.41 12.02 9.10 -74.06 -0.67 11.34 16 Total: -1.00 -65.78 303.20 4.27 -61.51 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.47 Total: 33.53 kcal Atomic # 6 Polarization: 26.53 SS G_CDS: 5.35 Total: 31.88 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -3.20 Total: -83.86 kcal Atomic # 8 Polarization: -83.02 SS G_CDS: -0.37 Total: -83.40 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -65.78 4.27 -61.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605841785.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.488 kcal (2) G-P(sol) polarization free energy of solvation -65.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds