Wall clock time and date at job start Tue Mar 31 2020 01:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46420 * 2 1 4 4 C 1.50697 * 109.47365 * 120.00065 * 2 1 3 5 5 H 1.07992 * 120.00092 * 120.00307 * 4 2 1 6 6 C 1.37880 * 119.99782 * 299.99763 * 4 2 1 7 7 N 1.31519 * 120.00180 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99950 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46795 * 60.00147 * 8 6 4 10 10 H 1.48496 * 109.47140 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47020 * 300.00704 * 8 6 4 12 12 N 1.46506 * 109.47186 * 240.00340 * 2 1 3 13 13 C 1.39055 * 120.00045 * 84.99316 * 12 2 1 14 14 N 1.32409 * 119.59137 * 0.02774 * 13 12 2 15 15 C 1.31822 * 121.76843 * 180.02562 * 14 13 12 16 16 C 1.39124 * 120.73789 * 359.94978 * 15 14 13 17 17 C 1.48425 * 120.44678 * 179.97438 * 16 15 14 18 18 N 1.34062 * 126.68120 * 179.70837 * 17 16 15 19 19 N 1.28979 * 107.26942 * 179.84114 * 18 17 16 20 20 N 1.28729 * 108.94831 * 0.42821 * 19 18 17 21 21 H 0.97001 * 125.34488 * 179.70401 * 20 19 18 22 22 N 1.28876 * 109.31926 * 359.73250 * 20 19 18 23 23 C 1.39924 * 119.11324 * 0.02562 * 16 15 14 24 24 C 1.38255 * 118.38423 * 359.97438 * 23 16 15 25 25 F 1.35103 * 120.41371 * 179.72559 * 24 23 16 26 26 H 1.08997 * 109.47402 * 60.00493 * 1 2 3 27 27 H 1.09009 * 109.46847 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47562 * 299.99491 * 1 2 3 29 29 H 0.96998 * 119.99951 * 179.97438 * 7 6 4 30 30 H 0.96994 * 119.99491 * 264.99751 * 12 2 1 31 31 H 1.08000 * 119.63009 * 179.97438 * 15 14 13 32 32 H 1.08002 * 120.81070 * 179.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3215 -1.1203 4.0080 9 1 3.8064 -1.1208 4.0081 10 1 1.8261 -0.4205 5.2204 11 1 1.8260 -2.5202 4.0077 12 7 2.0184 -0.6906 -1.1963 13 6 2.1510 0.0032 -2.3941 14 7 1.8342 1.2878 -2.4442 15 6 1.9429 1.9865 -3.5567 16 6 2.4002 1.3916 -4.7283 17 6 2.5195 2.1843 -5.9774 18 7 2.9482 1.7425 -7.1684 19 7 2.8976 2.7381 -7.9868 20 7 2.4672 3.7752 -7.3574 21 1 2.3415 4.6552 -7.7458 22 7 2.2302 3.4613 -6.1302 23 6 2.7451 0.0356 -4.7135 24 6 2.6169 -0.6623 -3.5269 25 9 2.9330 -1.9745 -3.4676 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 0.7082 1.1609 3.4844 30 1 2.2490 -1.6317 -1.1527 31 1 1.6744 3.0326 -3.5586 32 1 3.1027 -0.4540 -5.6073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609108401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:41 Heat of formation + Delta-G solvation = 116.881013 kcal Electronic energy + Delta-G solvation = -20462.297513 eV Core-core repulsion = 16989.613704 eV Total energy + Delta-G solvation = -3472.683809 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.52477 -44.43653 -39.77709 -36.14455 -34.42007 -33.67425 -32.62835 -31.69145 -30.08667 -27.96340 -25.33862 -24.88481 -24.13217 -23.21816 -21.79542 -20.42654 -19.25721 -17.97278 -17.17621 -17.14218 -16.61085 -16.10370 -15.50405 -14.94092 -14.88150 -14.17827 -13.96478 -13.66388 -13.41090 -12.83143 -12.58659 -12.34224 -12.22651 -12.10743 -11.51393 -11.31996 -11.13628 -11.08473 -10.97044 -10.77615 -10.39313 -10.26579 -9.52074 -9.35990 -9.23380 -9.03590 -8.52164 -7.06114 -6.17889 -4.27301 0.83661 1.21525 1.37449 2.20864 2.47128 3.23713 3.28763 3.30296 3.63962 3.84178 4.05250 4.13401 4.31136 4.58585 4.80096 5.02807 5.14896 5.17724 5.39445 5.55081 5.85974 6.00343 6.15642 6.33822 6.60725 6.79216 6.96070 7.06419 7.33363 7.59215 7.65442 7.85173 8.08428 8.13976 8.19505 8.57620 8.83115 9.39369 10.87777 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.034022 B = 0.003767 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.799152 B = 7431.704482 C = 7971.025636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.676 5.676 13 C 0.416 3.584 14 N -0.513 5.513 15 C 0.202 3.798 16 C -0.153 4.153 17 C 0.251 3.749 18 N -0.278 5.278 19 N -0.055 5.055 20 N -0.232 5.232 21 H 0.473 0.527 22 N -0.304 5.304 23 C -0.020 4.020 24 C -0.046 4.046 25 F -0.136 7.136 26 H 0.017 0.983 27 H 0.025 0.975 28 H 0.092 0.908 29 H 0.266 0.734 30 H 0.405 0.595 31 H 0.165 0.835 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 4.320 -15.831 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.134 4.134 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.298 5.298 13 C 0.172 3.828 14 N -0.230 5.230 15 C 0.037 3.963 16 C -0.164 4.164 17 C -0.028 4.028 18 N -0.152 5.152 19 N -0.051 5.051 20 N -0.078 5.078 21 H 0.327 0.673 22 N -0.156 5.156 23 C -0.048 4.048 24 C -0.074 4.074 25 F -0.116 7.116 26 H 0.036 0.964 27 H 0.044 0.956 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.240 0.760 31 H 0.183 0.817 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.400 4.906 -15.254 16.085 hybrid contribution 0.555 -0.911 0.248 1.095 sum 1.954 3.995 -15.006 15.651 Atomic orbital electron populations 1.22096 0.98152 0.99180 1.01074 1.18927 0.91167 0.94183 0.79115 0.92359 1.21176 1.32802 1.13469 0.90317 0.92117 1.24847 0.94690 0.94927 0.98976 1.69880 1.35600 1.22334 1.24101 0.86491 0.79223 0.79634 0.81682 1.20123 1.21064 1.20132 1.45862 1.64227 1.12491 1.07220 1.18893 0.88532 0.88926 0.86468 1.67626 1.22912 1.04952 1.27528 1.22611 0.88960 0.99399 0.85318 1.17535 1.16138 0.92666 0.90035 1.23358 0.97876 0.87463 0.94140 1.76065 1.19078 1.20354 0.99696 1.78846 1.13319 0.90738 1.22172 1.47671 1.41548 1.13751 1.04791 0.67314 1.74947 1.23659 1.16259 1.00712 1.21137 0.94247 0.92601 0.96785 1.17758 1.14423 0.80185 0.95006 1.91450 1.91577 1.31662 1.96865 0.96381 0.95602 0.88947 0.92441 0.75957 0.81745 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.28 37.16 0.34 -3.12 16 2 C 0.27 6.47 2.57 -69.08 -0.18 6.30 16 3 H 0.06 1.57 7.53 -51.93 -0.39 1.18 16 4 C -0.54 -14.01 8.73 -34.44 -0.30 -14.32 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -24.01 11.32 55.43 0.63 -23.38 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.68 -13.98 5.21 -54.97 -0.29 -14.26 16 13 C 0.42 7.87 7.47 -154.86 -1.16 6.72 16 14 N -0.51 -9.63 9.17 -12.11 -0.11 -9.75 16 15 C 0.20 3.10 10.85 -17.23 -0.19 2.91 16 16 C -0.15 -2.21 5.89 -104.74 -0.62 -2.83 16 17 C 0.25 3.38 7.95 -156.30 -1.24 2.14 16 18 N -0.28 -3.78 12.30 32.15 0.40 -3.38 16 19 N -0.06 -0.63 13.47 60.35 0.81 0.19 16 20 N -0.23 -2.01 7.90 60.35 0.48 -1.53 16 21 H 0.47 1.69 8.96 -340.37 -3.05 -1.37 16 22 N -0.30 -3.51 12.09 32.17 0.39 -3.12 16 23 C -0.02 -0.29 9.81 -38.94 -0.38 -0.67 16 24 C -0.05 -0.76 7.34 -39.14 -0.29 -1.05 16 25 F -0.14 -2.24 16.63 2.25 0.04 -2.20 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.40 7.82 7.99 -40.82 -0.33 7.49 16 31 H 0.17 2.15 7.88 -52.49 -0.41 1.74 16 32 H 0.15 1.89 7.96 -52.49 -0.42 1.48 16 LS Contribution 292.88 15.07 4.41 4.41 Total: -1.00 -29.37 292.88 -7.67 -37.03 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.30 Total: 2.85 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.10 Total: -2.21 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 2.30 Total: -55.24 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.37 -7.67 -37.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609108401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.915 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds