Wall clock time and date at job start Tue Mar 31 2020 01:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46420 * 2 1 4 4 C 1.50697 * 109.47365 * 120.00065 * 2 1 3 5 5 H 1.07992 * 120.00092 * 120.00307 * 4 2 1 6 6 C 1.37880 * 119.99782 * 299.99763 * 4 2 1 7 7 N 1.31519 * 120.00180 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99950 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46795 * 60.00147 * 8 6 4 10 10 H 1.48496 * 109.47140 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47020 * 300.00704 * 8 6 4 12 12 N 1.46506 * 109.47186 * 240.00340 * 2 1 3 13 13 C 1.39055 * 120.00045 * 84.99316 * 12 2 1 14 14 N 1.32409 * 119.59137 * 0.02774 * 13 12 2 15 15 C 1.31822 * 121.76843 * 180.02562 * 14 13 12 16 16 C 1.39124 * 120.73789 * 359.94978 * 15 14 13 17 17 C 1.48425 * 120.44678 * 179.97438 * 16 15 14 18 18 N 1.34062 * 126.68120 * 179.70837 * 17 16 15 19 19 N 1.28979 * 107.26942 * 179.84114 * 18 17 16 20 20 N 1.28729 * 108.94831 * 0.42821 * 19 18 17 21 21 H 0.97001 * 125.34488 * 179.70401 * 20 19 18 22 22 N 1.28876 * 109.31926 * 359.73250 * 20 19 18 23 23 C 1.39924 * 119.11324 * 0.02562 * 16 15 14 24 24 C 1.38255 * 118.38423 * 359.97438 * 23 16 15 25 25 F 1.35103 * 120.41371 * 179.72559 * 24 23 16 26 26 H 1.08997 * 109.47402 * 60.00493 * 1 2 3 27 27 H 1.09009 * 109.46847 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47562 * 299.99491 * 1 2 3 29 29 H 0.96998 * 119.99951 * 179.97438 * 7 6 4 30 30 H 0.96994 * 119.99491 * 264.99751 * 12 2 1 31 31 H 1.08000 * 119.63009 * 179.97438 * 15 14 13 32 32 H 1.08002 * 120.81070 * 179.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3215 -1.1203 4.0080 9 1 3.8064 -1.1208 4.0081 10 1 1.8261 -0.4205 5.2204 11 1 1.8260 -2.5202 4.0077 12 7 2.0184 -0.6906 -1.1963 13 6 2.1510 0.0032 -2.3941 14 7 1.8342 1.2878 -2.4442 15 6 1.9429 1.9865 -3.5567 16 6 2.4002 1.3916 -4.7283 17 6 2.5195 2.1843 -5.9774 18 7 2.9482 1.7425 -7.1684 19 7 2.8976 2.7381 -7.9868 20 7 2.4672 3.7752 -7.3574 21 1 2.3415 4.6552 -7.7458 22 7 2.2302 3.4613 -6.1302 23 6 2.7451 0.0356 -4.7135 24 6 2.6169 -0.6623 -3.5269 25 9 2.9330 -1.9745 -3.4676 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 0.7082 1.1609 3.4844 30 1 2.2490 -1.6317 -1.1527 31 1 1.6744 3.0326 -3.5586 32 1 3.1027 -0.4540 -5.6073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609108401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:41 Heat of formation + Delta-G solvation = 97.255079 kcal Electronic energy + Delta-G solvation = -20463.148558 eV Core-core repulsion = 16989.613704 eV Total energy + Delta-G solvation = -3473.534853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.82437 -45.37921 -41.11503 -37.73603 -35.52689 -34.95171 -34.15808 -32.93573 -31.68379 -29.46343 -27.30141 -25.90985 -25.37083 -24.48587 -23.00995 -22.13239 -20.22111 -19.49158 -18.40521 -18.06939 -18.01156 -17.85824 -16.83146 -16.71435 -16.17326 -15.43037 -15.36662 -14.96582 -14.85276 -14.45996 -14.02944 -13.78152 -13.59029 -13.27345 -13.11814 -12.88967 -12.71767 -12.43636 -12.28412 -12.16696 -12.11357 -12.08742 -11.10921 -10.84401 -10.63753 -10.60548 -10.42742 -8.51246 -8.15963 -6.32410 -0.29913 0.10532 0.24021 1.33831 1.45496 1.46337 1.49168 1.54165 2.25315 2.47500 2.70133 2.75963 2.99482 3.14119 3.37266 3.51076 3.86586 3.94425 4.25502 4.47600 4.67855 4.78689 4.80323 4.96494 5.03197 5.14193 5.33686 5.53700 5.68929 5.69585 5.84085 6.04866 6.26546 6.56715 6.74798 7.18754 7.22688 7.39389 8.88922 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.034022 B = 0.003767 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.799152 B = 7431.704482 C = 7971.025636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.281 3.719 3 H 0.024 0.976 4 C -0.555 4.555 5 H 0.063 0.937 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.966 3.034 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.691 5.691 13 C 0.395 3.605 14 N -0.542 5.542 15 C 0.197 3.803 16 C -0.132 4.132 17 C 0.235 3.765 18 N -0.297 5.297 19 N -0.055 5.055 20 N -0.199 5.199 21 H 0.494 0.506 22 N -0.298 5.298 23 C -0.010 4.010 24 C -0.045 4.045 25 F -0.136 7.136 26 H 0.023 0.977 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.266 0.734 30 H 0.408 0.592 31 H 0.186 0.814 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 4.669 -17.476 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.178 3.822 3 H 0.042 0.958 4 C -0.594 4.594 5 H 0.081 0.919 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.791 3.209 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.194 1.194 12 N -0.316 5.316 13 C 0.154 3.846 14 N -0.259 5.259 15 C 0.034 3.966 16 C -0.142 4.142 17 C -0.045 4.045 18 N -0.169 5.169 19 N -0.050 5.050 20 N -0.050 5.050 21 H 0.354 0.646 22 N -0.151 5.151 23 C -0.037 4.037 24 C -0.072 4.072 25 F -0.115 7.115 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.244 0.756 31 H 0.203 0.797 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.936 5.287 -16.976 17.886 hybrid contribution 0.409 -0.828 0.489 1.045 sum 2.346 4.459 -16.487 17.240 Atomic orbital electron populations 1.21901 0.98216 0.98851 1.00095 1.18442 0.91002 0.92540 0.80252 0.95786 1.21524 1.32833 1.13642 0.91368 0.91908 1.25645 0.94851 0.95580 1.01790 1.70007 1.36551 1.23542 1.24650 0.85500 0.78623 0.78681 0.78143 1.19812 1.20797 1.19434 1.45434 1.66527 1.12584 1.07060 1.19007 0.89775 0.89296 0.86510 1.67573 1.23635 1.05357 1.29366 1.22912 0.88824 1.00073 0.84791 1.17598 1.13744 0.92632 0.90226 1.23131 0.99428 0.88043 0.93911 1.76057 1.19723 1.21377 0.99767 1.78812 1.13489 0.90918 1.21806 1.47746 1.39180 1.14350 1.03768 0.64644 1.74913 1.22952 1.15453 1.01754 1.21351 0.93162 0.92568 0.96654 1.17725 1.14395 0.80267 0.94856 1.91449 1.91579 1.31604 1.96871 0.95775 0.95445 0.91301 0.92456 0.75551 0.79746 0.81131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 9.28 71.98 0.67 -5.75 16 2 C 0.28 14.00 2.57 44.24 0.11 14.12 16 3 H 0.02 1.36 7.53 -2.39 -0.02 1.34 16 4 C -0.56 -29.39 8.73 25.60 0.22 -29.17 16 5 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 6 C 0.02 1.17 5.30 84.65 0.45 1.62 16 7 N -0.91 -50.55 11.32 21.45 0.24 -50.31 16 8 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 N -0.69 -29.22 5.21 -327.82 -1.71 -30.93 16 13 C 0.40 15.09 7.47 133.11 0.99 16.09 16 14 N -0.54 -20.47 9.17 -192.24 -1.76 -22.24 16 15 C 0.20 5.84 10.85 84.91 0.92 6.76 16 16 C -0.13 -3.57 5.89 -19.94 -0.12 -3.69 16 17 C 0.24 5.73 7.95 137.36 1.09 6.82 16 18 N -0.30 -7.27 12.30 -52.19 -0.64 -7.91 16 19 N -0.06 -1.09 13.47 37.02 0.50 -0.59 16 20 N -0.20 -2.79 7.90 37.02 0.29 -2.50 16 21 H 0.49 1.74 8.96 -347.53 -3.12 -1.38 16 22 N -0.30 -6.00 12.09 -52.14 -0.63 -6.63 16 23 C -0.01 -0.27 9.81 22.68 0.22 -0.04 16 24 C -0.05 -1.46 7.34 22.55 0.17 -1.30 16 25 F -0.14 -4.35 16.63 44.97 0.75 -3.60 16 26 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.03 1.26 8.14 -2.38 -0.02 1.25 16 28 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 29 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.41 16.13 7.99 -92.71 -0.74 15.39 16 31 H 0.19 4.56 7.88 -2.91 -0.02 4.53 16 32 H 0.17 3.91 7.96 -2.91 -0.02 3.89 16 Total: -1.00 -63.14 292.88 1.15 -61.99 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -2.65 Total: 13.29 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 4.73 Total: 5.46 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -3.71 Total: -121.10 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.75 Total: -3.60 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -63.14 1.15 -61.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609108401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.243 kcal (2) G-P(sol) polarization free energy of solvation -63.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds