Wall clock time and date at job start Tue Mar 31 2020 00:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 C 1.50697 * 109.46930 * 184.99739 * 3 2 1 5 5 O 1.20823 * 120.00381 * 0.02562 * 4 3 2 6 6 O 1.34230 * 119.99776 * 179.97438 * 4 3 2 7 7 N 1.46496 * 109.47640 * 239.99612 * 2 1 3 8 8 C 1.34777 * 119.99614 * 59.99767 * 7 2 1 9 9 O 1.21691 * 120.00328 * 0.02562 * 8 7 2 10 10 C 1.46376 * 120.00069 * 179.97438 * 8 7 2 11 11 H 1.08005 * 119.99800 * 0.02562 * 10 8 7 12 12 C 1.40047 * 120.00289 * 179.72718 * 10 8 7 13 13 N 1.30676 * 119.99832 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00302 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46670 * 60.00241 * 14 12 10 16 16 H 1.48495 * 109.47289 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47229 * 300.00226 * 14 12 10 18 18 C 1.50699 * 109.46842 * 119.99466 * 2 1 3 19 19 C 1.38653 * 120.79509 * 269.72235 * 18 2 1 20 20 C 1.38205 * 119.16369 * 179.79782 * 19 18 2 21 21 N 1.31870 * 120.75950 * 0.48854 * 20 19 18 22 22 C 1.31867 * 121.73135 * 359.73960 * 21 20 19 23 23 C 1.38203 * 120.76450 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47605 * 300.00620 * 1 2 3 26 26 H 1.09005 * 109.47109 * 60.00241 * 1 2 3 27 27 H 1.08997 * 109.47014 * 304.99400 * 3 2 1 28 28 H 1.09001 * 109.47120 * 64.99771 * 3 2 1 29 29 H 0.96703 * 117.00101 * 179.97438 * 6 4 3 30 30 H 0.96996 * 120.00499 * 240.00344 * 7 2 1 31 31 H 0.97000 * 119.99487 * 179.97438 * 13 12 10 32 32 H 1.07997 * 120.41480 * 0.02562 * 19 18 2 33 33 H 1.07997 * 119.61555 * 180.20248 * 20 19 18 34 34 H 1.07997 * 119.61669 * 179.97438 * 22 21 20 35 35 H 1.07991 * 120.42063 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5418 1.4443 -0.1238 5 8 4.1427 0.3991 -0.2042 6 8 4.2120 2.6071 -0.1456 7 7 2.0184 -0.6906 -1.1960 8 6 1.6928 -0.2302 -2.4202 9 8 0.9935 0.7594 -2.5319 10 6 2.1812 -0.9199 -3.6153 11 1 2.8022 -1.7980 -3.5162 12 6 1.8382 -0.4449 -4.8873 13 7 1.0825 0.6144 -5.0073 14 14 2.4610 -1.3255 -6.4125 15 1 1.9714 -2.7275 -6.4091 16 1 1.9600 -0.6298 -7.6250 17 1 3.9460 -1.3196 -6.4158 18 6 2.0322 -0.7103 1.2305 19 6 2.2742 -0.0124 2.4039 20 6 2.7305 -0.6984 3.5136 21 7 2.9445 -1.9986 3.4619 22 6 2.7297 -2.6936 2.3620 23 6 2.2688 -2.0764 1.2145 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 1.9815 -0.8419 28 1 1.7516 1.9298 0.9314 29 1 5.1745 2.5576 -0.2260 30 1 2.5760 -1.4793 -1.1070 31 1 0.8452 0.9436 -5.8883 32 1 2.1048 1.0531 2.4512 33 1 2.9183 -0.1626 4.4323 34 1 2.9168 -3.7572 2.3577 35 1 2.0952 -2.6509 0.3167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609728959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:47 Heat of formation + Delta-G solvation = -86.637370 kcal Electronic energy + Delta-G solvation = -22334.807460 eV Core-core repulsion = 18912.173234 eV Total energy + Delta-G solvation = -3422.634225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.69290 -39.45470 -37.87686 -35.73185 -35.00372 -32.53865 -31.53666 -31.10177 -30.13557 -28.04387 -26.14539 -23.98407 -23.26964 -21.76032 -20.61401 -18.76415 -17.89359 -17.59889 -16.52294 -16.13050 -15.83602 -15.41896 -15.19274 -15.16925 -14.33619 -13.87375 -13.85613 -13.54080 -13.16597 -12.92505 -12.55378 -12.32585 -11.95876 -11.67429 -11.47266 -11.32770 -11.12913 -11.00251 -10.98196 -10.75434 -10.47558 -10.26800 -10.03129 -9.37758 -9.30851 -8.99937 -8.88551 -7.60508 -7.59670 -6.23520 -4.68429 1.28443 1.44160 2.75712 3.13126 3.18313 3.20142 3.48494 3.96312 4.07031 4.50355 4.55138 4.61627 4.69946 4.95918 5.18174 5.23070 5.34493 5.54723 5.64837 5.77801 5.81117 5.89966 6.00515 6.04015 6.16365 6.27512 6.39639 6.59303 6.83081 6.91704 6.92485 7.39481 7.85554 8.02137 8.09315 8.28431 8.37391 8.98333 9.46127 10.52717 10.70857 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021734 B = 0.005924 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.974255 B = 4725.511691 C = 5099.518079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.238 3.762 3 C -0.126 4.126 4 C 0.483 3.517 5 O -0.500 6.500 6 O -0.525 6.525 7 N -0.747 5.747 8 C 0.559 3.441 9 O -0.580 6.580 10 C -0.542 4.542 11 H 0.066 0.934 12 C 0.090 3.910 13 N -0.766 5.766 14 Si 0.906 3.094 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.269 1.269 18 C -0.013 4.013 19 C -0.177 4.177 20 C 0.096 3.904 21 N -0.495 5.495 22 C 0.099 3.901 23 C -0.158 4.158 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.137 0.863 28 H 0.096 0.904 29 H 0.402 0.598 30 H 0.386 0.614 31 H 0.269 0.731 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.178 -0.366 11.694 11.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.150 3.850 3 C -0.165 4.165 4 C 0.325 3.675 5 O -0.386 6.386 6 O -0.337 6.337 7 N -0.403 5.403 8 C 0.364 3.636 9 O -0.464 6.464 10 C -0.579 4.579 11 H 0.084 0.916 12 C -0.130 4.130 13 N -0.395 5.395 14 Si 0.731 3.269 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.194 1.194 18 C -0.021 4.021 19 C -0.198 4.198 20 C -0.060 4.060 21 N -0.205 5.205 22 C -0.058 4.058 23 C -0.178 4.178 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.154 0.846 28 H 0.114 0.886 29 H 0.259 0.741 30 H 0.220 0.780 31 H 0.079 0.921 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.602 -0.223 12.229 12.335 hybrid contribution 1.051 -0.374 -1.593 1.945 sum 2.653 -0.597 10.636 10.978 Atomic orbital electron populations 1.22201 0.92938 1.02604 1.03496 1.18528 0.93869 0.88691 0.83959 1.22024 0.87790 1.00440 1.06237 1.23384 0.91531 0.80767 0.71866 1.90670 1.70173 1.33068 1.44702 1.84544 1.26404 1.36819 1.85914 1.46268 1.57116 1.33074 1.03856 1.18127 0.80007 0.84227 0.81210 1.90512 1.41873 1.28283 1.85699 1.20835 1.33635 1.13870 0.89533 0.91609 1.25664 0.93324 0.94129 0.99912 1.69991 1.26699 1.18608 1.24204 0.86460 0.79787 0.80109 0.80580 1.19265 1.20549 1.19354 1.20427 0.92906 0.94082 0.94710 1.22004 1.02539 1.01264 0.93951 1.22606 0.95281 0.90376 0.97765 1.67618 1.15920 1.08451 1.28482 1.22680 0.94875 1.00000 0.88235 1.21979 1.00647 0.95051 1.00081 0.92474 0.93102 0.88465 0.84551 0.88579 0.74087 0.78034 0.92072 0.85096 0.83164 0.82966 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.38 37.16 0.31 -2.36 16 2 C 0.24 4.26 0.52 -132.98 -0.07 4.19 16 3 C -0.13 -2.21 4.17 -27.88 -0.12 -2.32 16 4 C 0.48 8.77 7.57 36.00 0.27 9.04 16 5 O -0.50 -10.16 14.77 -18.75 -0.28 -10.44 16 6 O -0.53 -8.02 13.42 -39.26 -0.53 -8.55 16 7 N -0.75 -16.00 3.35 -50.08 -0.17 -16.17 16 8 C 0.56 14.80 7.17 -12.99 -0.09 14.71 16 9 O -0.58 -16.64 11.28 5.20 0.06 -16.58 16 10 C -0.54 -14.91 9.54 -35.63 -0.34 -15.25 16 11 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 12 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 13 N -0.77 -22.05 11.83 55.55 0.66 -21.39 16 14 Si 0.91 19.93 29.56 -169.99 -5.02 14.90 16 15 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 C -0.01 -0.20 3.50 -104.31 -0.37 -0.57 16 19 C -0.18 -2.43 8.89 -39.44 -0.35 -2.78 16 20 C 0.10 1.27 11.18 -17.55 -0.20 1.07 16 21 N -0.50 -7.21 10.36 -13.26 -0.14 -7.34 16 22 C 0.10 1.36 11.18 -17.55 -0.20 1.17 16 23 C -0.16 -2.36 9.05 -39.44 -0.36 -2.72 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 2.01 6.16 -51.93 -0.32 1.69 16 27 H 0.14 2.81 6.31 -51.93 -0.33 2.48 16 28 H 0.10 1.31 6.30 -51.93 -0.33 0.98 16 29 H 0.40 4.41 9.10 45.56 0.41 4.83 16 30 H 0.39 7.96 6.66 -40.82 -0.27 7.68 16 31 H 0.27 7.08 8.29 -40.82 -0.34 6.75 16 32 H 0.13 1.52 6.18 -52.49 -0.32 1.19 16 33 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 35 H 0.14 1.99 6.82 -52.49 -0.36 1.63 16 LS Contribution 298.62 15.07 4.50 4.50 Total: -1.00 -33.99 298.62 -5.27 -39.26 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -2.75 Total: 15.30 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -1.60 Total: 6.52 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.35 Total: -44.90 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.75 Total: -35.57 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.99 -5.27 -39.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609728959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.381 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds