Wall clock time and date at job start Tue Mar 31 2020 00:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 C 1.50697 * 109.46930 * 184.99739 * 3 2 1 5 5 O 1.20823 * 120.00381 * 0.02562 * 4 3 2 6 6 O 1.34230 * 119.99776 * 179.97438 * 4 3 2 7 7 N 1.46496 * 109.47640 * 239.99612 * 2 1 3 8 8 C 1.34777 * 119.99614 * 59.99767 * 7 2 1 9 9 O 1.21691 * 120.00328 * 0.02562 * 8 7 2 10 10 C 1.46376 * 120.00069 * 179.97438 * 8 7 2 11 11 H 1.08005 * 119.99800 * 0.02562 * 10 8 7 12 12 C 1.40047 * 120.00289 * 179.72718 * 10 8 7 13 13 N 1.30676 * 119.99832 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00302 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46670 * 60.00241 * 14 12 10 16 16 H 1.48495 * 109.47289 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47229 * 300.00226 * 14 12 10 18 18 C 1.50699 * 109.46842 * 119.99466 * 2 1 3 19 19 C 1.38653 * 120.79509 * 269.72235 * 18 2 1 20 20 C 1.38205 * 119.16369 * 179.79782 * 19 18 2 21 21 N 1.31870 * 120.75950 * 0.48854 * 20 19 18 22 22 C 1.31867 * 121.73135 * 359.73960 * 21 20 19 23 23 C 1.38203 * 120.76450 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47605 * 300.00620 * 1 2 3 26 26 H 1.09005 * 109.47109 * 60.00241 * 1 2 3 27 27 H 1.08997 * 109.47014 * 304.99400 * 3 2 1 28 28 H 1.09001 * 109.47120 * 64.99771 * 3 2 1 29 29 H 0.96703 * 117.00101 * 179.97438 * 6 4 3 30 30 H 0.96996 * 120.00499 * 240.00344 * 7 2 1 31 31 H 0.97000 * 119.99487 * 179.97438 * 13 12 10 32 32 H 1.07997 * 120.41480 * 0.02562 * 19 18 2 33 33 H 1.07997 * 119.61555 * 180.20248 * 20 19 18 34 34 H 1.07997 * 119.61669 * 179.97438 * 22 21 20 35 35 H 1.07991 * 120.42063 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5418 1.4443 -0.1238 5 8 4.1427 0.3991 -0.2042 6 8 4.2120 2.6071 -0.1456 7 7 2.0184 -0.6906 -1.1960 8 6 1.6928 -0.2302 -2.4202 9 8 0.9935 0.7594 -2.5319 10 6 2.1812 -0.9199 -3.6153 11 1 2.8022 -1.7980 -3.5162 12 6 1.8382 -0.4449 -4.8873 13 7 1.0825 0.6144 -5.0073 14 14 2.4610 -1.3255 -6.4125 15 1 1.9714 -2.7275 -6.4091 16 1 1.9600 -0.6298 -7.6250 17 1 3.9460 -1.3196 -6.4158 18 6 2.0322 -0.7103 1.2305 19 6 2.2742 -0.0124 2.4039 20 6 2.7305 -0.6984 3.5136 21 7 2.9445 -1.9986 3.4619 22 6 2.7297 -2.6936 2.3620 23 6 2.2688 -2.0764 1.2145 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 1.9815 -0.8419 28 1 1.7516 1.9298 0.9314 29 1 5.1745 2.5576 -0.2260 30 1 2.5760 -1.4793 -1.1070 31 1 0.8452 0.9436 -5.8883 32 1 2.1048 1.0531 2.4512 33 1 2.9183 -0.1626 4.4323 34 1 2.9168 -3.7572 2.3577 35 1 2.0952 -2.6509 0.3167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609728959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:46 Heat of formation + Delta-G solvation = -111.663810 kcal Electronic energy + Delta-G solvation = -22335.892687 eV Core-core repulsion = 18912.173234 eV Total energy + Delta-G solvation = -3423.719453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00845 -40.70292 -39.53511 -37.24352 -36.54654 -34.56387 -33.03870 -32.29047 -31.50759 -29.47203 -28.14900 -25.27579 -24.37959 -23.10039 -22.26521 -20.32927 -19.56284 -18.98686 -18.03331 -17.66067 -17.15064 -16.92234 -16.67876 -16.37326 -15.87941 -15.46935 -15.12334 -14.66909 -14.61888 -14.48325 -14.25539 -13.90217 -13.36385 -13.19398 -12.93802 -12.89414 -12.67325 -12.59443 -12.49668 -12.38291 -12.19193 -12.00948 -11.48226 -10.90264 -10.55099 -10.41748 -10.04533 -9.65267 -9.39473 -8.26055 -6.81319 0.23648 0.30867 1.33050 1.38393 1.40358 1.51194 2.18757 2.24826 2.49729 2.87993 3.05564 3.41646 3.56049 3.62831 3.77041 4.08276 4.11955 4.22501 4.29016 4.43206 4.60559 4.71008 4.76340 4.80147 4.89580 4.93600 5.10462 5.32567 5.39359 5.42657 5.65831 5.79242 5.91057 6.21893 6.33223 6.90385 7.04344 7.06870 7.55781 8.52159 8.70282 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021734 B = 0.005924 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.974255 B = 4725.511691 C = 5099.518079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.235 3.765 3 C -0.126 4.126 4 C 0.482 3.518 5 O -0.526 6.526 6 O -0.519 6.519 7 N -0.738 5.738 8 C 0.551 3.449 9 O -0.609 6.609 10 C -0.578 4.578 11 H 0.073 0.927 12 C 0.038 3.962 13 N -0.813 5.813 14 Si 0.985 3.015 15 H -0.257 1.257 16 H -0.272 1.272 17 H -0.262 1.262 18 C -0.025 4.025 19 C -0.177 4.177 20 C 0.098 3.902 21 N -0.510 5.510 22 C 0.098 3.902 23 C -0.172 4.172 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.138 0.862 29 H 0.421 0.579 30 H 0.388 0.612 31 H 0.273 0.727 32 H 0.154 0.846 33 H 0.185 0.815 34 H 0.177 0.823 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -0.760 13.020 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.147 3.853 3 C -0.164 4.164 4 C 0.325 3.675 5 O -0.415 6.415 6 O -0.332 6.332 7 N -0.392 5.392 8 C 0.355 3.645 9 O -0.495 6.495 10 C -0.614 4.614 11 H 0.091 0.909 12 C -0.178 4.178 13 N -0.443 5.443 14 Si 0.806 3.194 15 H -0.181 1.181 16 H -0.196 1.196 17 H -0.187 1.187 18 C -0.034 4.034 19 C -0.196 4.196 20 C -0.058 4.058 21 N -0.219 5.219 22 C -0.058 4.058 23 C -0.192 4.192 24 H 0.074 0.926 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.156 0.844 29 H 0.282 0.718 30 H 0.223 0.777 31 H 0.083 0.917 32 H 0.171 0.829 33 H 0.202 0.798 34 H 0.194 0.806 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.513 -0.616 13.595 13.839 hybrid contribution 0.805 -0.207 -1.878 2.054 sum 3.318 -0.823 11.717 12.205 Atomic orbital electron populations 1.22089 0.92804 1.02390 1.03239 1.18671 0.94041 0.89004 0.83553 1.21985 0.87515 1.00007 1.06935 1.23474 0.91834 0.80922 0.71243 1.90660 1.70764 1.34041 1.46041 1.84494 1.28139 1.35347 1.85243 1.45978 1.56333 1.32935 1.03953 1.18233 0.79712 0.83895 0.82679 1.90492 1.42971 1.29383 1.86680 1.21350 1.34503 1.14643 0.90951 0.90926 1.26719 0.93020 0.94679 1.03370 1.70126 1.28280 1.20492 1.25375 0.85252 0.79215 0.79037 0.75927 1.18084 1.19629 1.18682 1.20263 0.94340 0.94426 0.94354 1.22229 1.01908 1.02332 0.93180 1.23168 0.93856 0.90056 0.98752 1.67705 1.16277 1.09304 1.28628 1.23034 0.93992 1.01181 0.87564 1.22045 1.01523 0.95059 1.00592 0.92649 0.89588 0.92309 0.87874 0.84389 0.71838 0.77732 0.91656 0.82884 0.79821 0.80591 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 8.38 71.98 0.60 -4.50 16 2 C 0.23 8.33 0.52 2.86 0.00 8.34 16 3 C -0.13 -4.32 4.17 29.85 0.12 -4.20 16 4 C 0.48 17.09 7.57 71.23 0.54 17.63 16 5 O -0.53 -21.10 14.77 21.97 0.32 -20.78 16 6 O -0.52 -15.07 13.42 -51.41 -0.69 -15.76 16 7 N -0.74 -32.26 3.35 -430.58 -1.44 -33.70 16 8 C 0.55 30.15 7.17 86.36 0.62 30.77 16 9 O -0.61 -36.46 11.28 -4.32 -0.05 -36.51 16 10 C -0.58 -32.56 9.54 24.83 0.24 -32.32 16 11 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 12 C 0.04 2.09 5.50 85.30 0.47 2.55 16 13 N -0.81 -48.11 11.83 21.84 0.26 -47.85 16 14 Si 0.99 41.16 29.56 68.60 2.03 43.19 16 15 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 16 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 C -0.03 -0.76 3.50 -19.67 -0.07 -0.83 16 19 C -0.18 -4.32 8.89 22.36 0.20 -4.12 16 20 C 0.10 2.25 11.18 84.68 0.95 3.20 16 21 N -0.51 -13.47 10.36 -195.85 -2.03 -15.50 16 22 C 0.10 2.53 11.18 84.68 0.95 3.48 16 23 C -0.17 -4.98 9.05 22.36 0.20 -4.78 16 24 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.06 2.52 6.16 -2.38 -0.01 2.51 16 27 H 0.10 4.35 6.31 -2.39 -0.02 4.34 16 28 H 0.14 3.42 6.30 -2.39 -0.02 3.40 16 29 H 0.42 8.51 9.10 -74.06 -0.67 7.84 16 30 H 0.39 16.36 6.66 -92.71 -0.62 15.75 16 31 H 0.27 14.78 8.29 -92.71 -0.77 14.01 16 32 H 0.15 2.95 6.18 -2.91 -0.02 2.93 16 33 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.18 3.49 8.06 -2.91 -0.02 3.46 16 35 H 0.13 3.85 6.82 -2.92 -0.02 3.83 16 Total: -1.00 -75.41 298.62 3.09 -72.32 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.13 Total: 39.37 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 4.82 Total: 15.22 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -3.21 Total: -97.05 kcal Atomic # 8 Polarization: -72.64 SS G_CDS: -0.41 Total: -73.05 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -75.41 3.09 -72.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609728959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.346 kcal (2) G-P(sol) polarization free energy of solvation -75.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds