Wall clock time and date at job start Tue Mar 31 2020 00:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 C 1.50697 * 109.47134 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00000 * 0.02562 * 4 3 2 6 6 O 1.34234 * 120.00428 * 180.02562 * 4 3 2 7 7 N 1.46502 * 109.47397 * 120.00434 * 2 1 3 8 8 C 1.34770 * 119.99674 * 300.00314 * 7 2 1 9 9 O 1.21694 * 120.00398 * 359.97438 * 8 7 2 10 10 C 1.46379 * 120.00146 * 180.02562 * 8 7 2 11 11 H 1.08003 * 119.99331 * 353.92754 * 10 8 7 12 12 C 1.40040 * 120.00362 * 173.93924 * 10 8 7 13 13 N 1.30674 * 119.99941 * 6.14405 * 12 10 8 14 14 Si 1.86805 * 119.99914 * 186.14666 * 12 10 8 15 15 H 1.48499 * 109.46902 * 94.98219 * 14 12 10 16 16 H 1.48500 * 109.47027 * 214.98057 * 14 12 10 17 17 H 1.48494 * 109.46974 * 334.98008 * 14 12 10 18 18 C 1.50706 * 109.47016 * 240.00541 * 2 1 3 19 19 C 1.38643 * 120.78880 * 89.71808 * 18 2 1 20 20 C 1.38213 * 119.16028 * 180.29432 * 19 18 2 21 21 N 1.31864 * 120.76293 * 359.97438 * 20 19 18 22 22 C 1.31871 * 121.72603 * 359.97438 * 21 20 19 23 23 C 1.38201 * 120.76846 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.46872 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46880 * 299.99583 * 1 2 3 26 26 H 1.08998 * 109.47119 * 60.00094 * 1 2 3 27 27 H 1.08997 * 109.47602 * 300.00507 * 3 2 1 28 28 H 1.08999 * 109.47005 * 60.00493 * 3 2 1 29 29 H 0.96695 * 117.00413 * 179.97438 * 6 4 3 30 30 H 0.97001 * 119.99732 * 119.99807 * 7 2 1 31 31 H 0.97003 * 119.99694 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.42234 * 0.24867 * 19 18 2 33 33 H 1.07996 * 119.61234 * 179.97438 * 20 19 18 34 34 H 1.08005 * 119.61524 * 180.02562 * 22 21 20 35 35 H 1.07993 * 120.42248 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1512 0.3961 0.0006 6 8 4.2182 2.6050 0.0013 7 7 2.0185 -0.6907 1.1961 8 6 1.6928 -0.2303 2.4202 9 8 0.9935 0.7593 2.5320 10 6 2.1812 -0.9200 3.6154 11 1 2.7193 -1.8515 3.5192 12 6 1.9506 -0.3723 4.8834 13 7 1.1981 0.6886 5.0098 14 14 2.7187 -1.1581 6.3941 15 1 3.9931 -0.4677 6.7172 16 1 1.7856 -1.0381 7.5430 17 1 2.9879 -2.5930 6.1228 18 6 2.0324 -0.7103 -1.2306 19 6 2.2634 -0.0143 -2.4072 20 6 2.7182 -0.7005 -3.5174 21 7 2.9325 -2.0006 -3.4657 22 6 2.7246 -2.6944 -2.3637 23 6 2.2700 -2.0762 -1.2142 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 5.1838 2.5545 0.0020 30 1 2.5761 -1.4794 1.1070 31 1 1.0387 1.0682 5.8881 32 1 2.0895 1.0505 -2.4558 33 1 2.9002 -0.1656 -4.4378 34 1 2.9118 -3.7581 -2.3594 35 1 2.1013 -2.6499 -0.3150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609728960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:49 Heat of formation + Delta-G solvation = -88.100798 kcal Electronic energy + Delta-G solvation = -22333.621567 eV Core-core repulsion = 18910.923883 eV Total energy + Delta-G solvation = -3422.697684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71317 -39.44595 -37.90272 -35.77788 -34.99700 -32.55321 -31.53246 -31.09305 -30.14411 -28.05066 -26.16194 -23.97651 -23.24808 -21.77959 -20.63177 -18.77050 -17.89294 -17.63608 -16.51553 -16.15467 -15.83168 -15.42083 -15.21372 -15.17095 -14.34717 -13.87686 -13.84989 -13.51170 -13.18395 -12.93471 -12.58599 -12.36713 -11.92766 -11.66827 -11.47191 -11.37388 -11.13615 -11.02840 -11.00082 -10.76387 -10.49437 -10.24627 -10.08766 -9.34730 -9.27698 -8.98010 -8.90017 -7.62994 -7.61447 -6.25939 -4.69545 1.30355 1.46636 2.71994 3.10312 3.18372 3.21466 3.45878 3.97870 4.06407 4.47784 4.56531 4.62156 4.70879 4.95712 5.19774 5.24002 5.36119 5.53959 5.65299 5.75351 5.80352 5.90936 6.00065 6.04287 6.16525 6.27315 6.40640 6.59904 6.84450 6.89393 6.91369 7.38537 7.83306 8.00234 8.11113 8.27400 8.33766 8.97182 9.43901 10.50646 10.68698 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.005900 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.965614 B = 4744.941546 C = 5084.714876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.238 3.762 3 C -0.128 4.128 4 C 0.482 3.518 5 O -0.502 6.502 6 O -0.524 6.524 7 N -0.749 5.749 8 C 0.559 3.441 9 O -0.579 6.579 10 C -0.543 4.543 11 H 0.067 0.933 12 C 0.090 3.910 13 N -0.766 5.766 14 Si 0.905 3.095 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.265 1.265 18 C -0.009 4.009 19 C -0.177 4.177 20 C 0.097 3.903 21 N -0.496 5.496 22 C 0.099 3.901 23 C -0.158 4.158 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.050 0.950 27 H 0.097 0.903 28 H 0.139 0.861 29 H 0.402 0.598 30 H 0.386 0.614 31 H 0.268 0.732 32 H 0.130 0.870 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 -0.348 -11.621 11.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.150 3.850 3 C -0.166 4.166 4 C 0.324 3.676 5 O -0.388 6.388 6 O -0.336 6.336 7 N -0.405 5.405 8 C 0.364 3.636 9 O -0.463 6.463 10 C -0.579 4.579 11 H 0.085 0.915 12 C -0.130 4.130 13 N -0.394 5.394 14 Si 0.730 3.270 15 H -0.199 1.199 16 H -0.204 1.204 17 H -0.189 1.189 18 C -0.017 4.017 19 C -0.197 4.197 20 C -0.060 4.060 21 N -0.205 5.205 22 C -0.058 4.058 23 C -0.178 4.178 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.157 0.843 29 H 0.259 0.741 30 H 0.220 0.780 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.580 -0.204 -12.147 12.251 hybrid contribution 1.150 -0.300 1.532 1.939 sum 2.730 -0.503 -10.615 10.972 Atomic orbital electron populations 1.22199 0.92930 1.02612 1.03505 1.18541 0.93860 0.88687 0.83954 1.22044 0.87266 1.00359 1.06953 1.23443 0.91822 0.80776 0.71521 1.90676 1.70329 1.32945 1.44894 1.84549 1.26017 1.36753 1.86267 1.46286 1.57169 1.33098 1.03936 1.18151 0.79952 0.84295 0.81215 1.90510 1.41505 1.28586 1.85700 1.20872 1.38193 1.09170 0.89706 0.91498 1.25661 0.93312 0.94208 0.99830 1.70005 1.27701 1.17625 1.24082 0.86389 0.79363 0.80286 0.80939 1.19864 1.20419 1.18871 1.20385 0.92665 0.94047 0.94607 1.21967 1.02644 1.01187 0.93947 1.22586 0.95265 0.90380 0.97754 1.67614 1.15924 1.08468 1.28521 1.22668 0.94891 0.99975 0.88224 1.21956 1.00788 0.95029 1.00064 0.92459 0.88459 0.93093 0.88524 0.84332 0.74082 0.78036 0.92113 0.85255 0.83228 0.83007 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.38 37.16 0.31 -2.35 16 2 C 0.24 4.26 0.52 -132.96 -0.07 4.19 16 3 C -0.13 -2.23 4.18 -27.88 -0.12 -2.35 16 4 C 0.48 8.62 7.38 36.00 0.27 8.89 16 5 O -0.50 -10.01 14.70 -18.76 -0.28 -10.28 16 6 O -0.52 -7.88 13.42 -39.27 -0.53 -8.41 16 7 N -0.75 -15.97 3.68 -50.07 -0.18 -16.15 16 8 C 0.56 14.72 7.16 -12.99 -0.09 14.62 16 9 O -0.58 -16.55 11.25 5.19 0.06 -16.49 16 10 C -0.54 -14.84 9.53 -35.63 -0.34 -15.18 16 11 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 12 C 0.09 2.43 5.49 -17.37 -0.10 2.33 16 13 N -0.77 -21.93 11.85 55.55 0.66 -21.28 16 14 Si 0.91 19.86 29.56 -169.99 -5.03 14.84 16 15 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 18 C -0.01 -0.13 3.23 -104.32 -0.34 -0.47 16 19 C -0.18 -2.46 8.62 -39.44 -0.34 -2.80 16 20 C 0.10 1.29 11.18 -17.55 -0.20 1.09 16 21 N -0.50 -7.29 10.36 -13.25 -0.14 -7.43 16 22 C 0.10 1.38 11.18 -17.55 -0.20 1.18 16 23 C -0.16 -2.39 9.05 -39.44 -0.36 -2.75 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.10 2.01 6.16 -51.93 -0.32 1.69 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.10 1.32 6.59 -51.93 -0.34 0.98 16 28 H 0.14 2.89 6.16 -51.93 -0.32 2.57 16 29 H 0.40 4.29 9.10 45.56 0.41 4.71 16 30 H 0.39 7.91 6.71 -40.82 -0.27 7.63 16 31 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 32 H 0.13 1.53 6.31 -52.49 -0.33 1.20 16 33 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 35 H 0.14 1.98 6.81 -52.49 -0.36 1.63 16 LS Contribution 298.46 15.07 4.50 4.50 Total: -1.00 -33.79 298.46 -5.26 -39.05 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -2.77 Total: 15.24 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.56 Total: 6.41 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.34 Total: -44.86 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.74 Total: -35.18 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.79 -5.26 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609728960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.051 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds