Wall clock time and date at job start Tue Mar 31 2020 00:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 C 1.50697 * 109.47134 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00000 * 0.02562 * 4 3 2 6 6 O 1.34234 * 120.00428 * 180.02562 * 4 3 2 7 7 N 1.46502 * 109.47397 * 120.00434 * 2 1 3 8 8 C 1.34770 * 119.99674 * 300.00314 * 7 2 1 9 9 O 1.21694 * 120.00398 * 359.97438 * 8 7 2 10 10 C 1.46379 * 120.00146 * 180.02562 * 8 7 2 11 11 H 1.08003 * 119.99331 * 353.92754 * 10 8 7 12 12 C 1.40040 * 120.00362 * 173.93924 * 10 8 7 13 13 N 1.30674 * 119.99941 * 6.14405 * 12 10 8 14 14 Si 1.86805 * 119.99914 * 186.14666 * 12 10 8 15 15 H 1.48499 * 109.46902 * 94.98219 * 14 12 10 16 16 H 1.48500 * 109.47027 * 214.98057 * 14 12 10 17 17 H 1.48494 * 109.46974 * 334.98008 * 14 12 10 18 18 C 1.50706 * 109.47016 * 240.00541 * 2 1 3 19 19 C 1.38643 * 120.78880 * 89.71808 * 18 2 1 20 20 C 1.38213 * 119.16028 * 180.29432 * 19 18 2 21 21 N 1.31864 * 120.76293 * 359.97438 * 20 19 18 22 22 C 1.31871 * 121.72603 * 359.97438 * 21 20 19 23 23 C 1.38201 * 120.76846 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.46872 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46880 * 299.99583 * 1 2 3 26 26 H 1.08998 * 109.47119 * 60.00094 * 1 2 3 27 27 H 1.08997 * 109.47602 * 300.00507 * 3 2 1 28 28 H 1.08999 * 109.47005 * 60.00493 * 3 2 1 29 29 H 0.96695 * 117.00413 * 179.97438 * 6 4 3 30 30 H 0.97001 * 119.99732 * 119.99807 * 7 2 1 31 31 H 0.97003 * 119.99694 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.42234 * 0.24867 * 19 18 2 33 33 H 1.07996 * 119.61234 * 179.97438 * 20 19 18 34 34 H 1.08005 * 119.61524 * 180.02562 * 22 21 20 35 35 H 1.07993 * 120.42248 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1512 0.3961 0.0006 6 8 4.2182 2.6050 0.0013 7 7 2.0185 -0.6907 1.1961 8 6 1.6928 -0.2303 2.4202 9 8 0.9935 0.7593 2.5320 10 6 2.1812 -0.9200 3.6154 11 1 2.7193 -1.8515 3.5192 12 6 1.9506 -0.3723 4.8834 13 7 1.1981 0.6886 5.0098 14 14 2.7187 -1.1581 6.3941 15 1 3.9931 -0.4677 6.7172 16 1 1.7856 -1.0381 7.5430 17 1 2.9879 -2.5930 6.1228 18 6 2.0324 -0.7103 -1.2306 19 6 2.2634 -0.0143 -2.4072 20 6 2.7182 -0.7005 -3.5174 21 7 2.9325 -2.0006 -3.4657 22 6 2.7246 -2.6944 -2.3637 23 6 2.2700 -2.0762 -1.2142 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 5.1838 2.5545 0.0020 30 1 2.5761 -1.4794 1.1070 31 1 1.0387 1.0682 5.8881 32 1 2.0895 1.0505 -2.4558 33 1 2.9002 -0.1656 -4.4378 34 1 2.9118 -3.7581 -2.3594 35 1 2.1013 -2.6499 -0.3150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609728960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:48 Heat of formation + Delta-G solvation = -113.055041 kcal Electronic energy + Delta-G solvation = -22334.703664 eV Core-core repulsion = 18910.923883 eV Total energy + Delta-G solvation = -3423.779782 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02715 -40.68315 -39.55872 -37.26161 -36.53824 -34.57103 -33.04286 -32.28405 -31.51162 -29.47381 -28.15672 -25.27296 -24.36501 -23.10970 -22.27800 -20.33232 -19.56885 -18.99370 -18.03667 -17.65502 -17.16633 -16.91942 -16.68358 -16.36661 -15.88244 -15.47277 -15.13792 -14.68875 -14.60061 -14.48878 -14.26070 -13.91818 -13.35031 -13.16648 -13.00010 -12.89331 -12.67264 -12.61398 -12.49705 -12.39002 -12.19338 -11.98029 -11.51334 -10.91520 -10.51672 -10.41069 -10.03710 -9.65265 -9.42127 -8.27607 -6.81365 0.24431 0.32445 1.31472 1.37941 1.38711 1.53276 2.18019 2.24137 2.49058 2.88046 3.04802 3.42074 3.55236 3.63251 3.76307 4.08801 4.12448 4.23685 4.29712 4.41789 4.60000 4.70993 4.76284 4.80069 4.89521 4.93785 5.10818 5.33180 5.39692 5.42352 5.64811 5.79964 5.90288 6.21101 6.32197 6.90203 7.05021 7.05892 7.54405 8.51110 8.69145 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.005900 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.965614 B = 4744.941546 C = 5084.714876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.235 3.765 3 C -0.128 4.128 4 C 0.483 3.517 5 O -0.526 6.526 6 O -0.518 6.518 7 N -0.740 5.740 8 C 0.550 3.450 9 O -0.608 6.608 10 C -0.578 4.578 11 H 0.074 0.926 12 C 0.038 3.962 13 N -0.813 5.813 14 Si 0.985 3.015 15 H -0.268 1.268 16 H -0.270 1.270 17 H -0.254 1.254 18 C -0.021 4.021 19 C -0.177 4.177 20 C 0.098 3.902 21 N -0.510 5.510 22 C 0.098 3.902 23 C -0.173 4.173 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.137 0.863 28 H 0.103 0.897 29 H 0.422 0.578 30 H 0.389 0.611 31 H 0.274 0.726 32 H 0.151 0.849 33 H 0.184 0.816 34 H 0.177 0.823 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 -0.717 -12.923 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.148 3.852 3 C -0.166 4.166 4 C 0.326 3.674 5 O -0.415 6.415 6 O -0.332 6.332 7 N -0.394 5.394 8 C 0.354 3.646 9 O -0.494 6.494 10 C -0.614 4.614 11 H 0.092 0.908 12 C -0.178 4.178 13 N -0.442 5.442 14 Si 0.806 3.194 15 H -0.193 1.193 16 H -0.195 1.195 17 H -0.178 1.178 18 C -0.029 4.029 19 C -0.197 4.197 20 C -0.058 4.058 21 N -0.220 5.220 22 C -0.058 4.058 23 C -0.193 4.193 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.155 0.845 28 H 0.122 0.878 29 H 0.282 0.718 30 H 0.223 0.777 31 H 0.084 0.916 32 H 0.169 0.831 33 H 0.201 0.799 34 H 0.194 0.806 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.575 -0.573 -13.489 13.745 hybrid contribution 0.867 -0.144 1.814 2.016 sum 3.442 -0.717 -11.675 12.193 Atomic orbital electron populations 1.22089 0.92767 1.02427 1.03258 1.18682 0.94053 0.88984 0.83530 1.21988 0.87449 1.00012 1.07139 1.23461 0.92007 0.80956 0.70956 1.90667 1.70833 1.33854 1.46170 1.84498 1.27800 1.35279 1.85580 1.46001 1.56418 1.32964 1.04016 1.18259 0.79639 0.83987 0.82673 1.90491 1.42609 1.29677 1.86672 1.21377 1.39007 1.09961 0.91080 0.90796 1.26714 0.93331 0.94519 1.03194 1.70133 1.29354 1.19442 1.25299 0.85187 0.78359 0.79535 0.76365 1.19253 1.19472 1.17767 1.20226 0.94042 0.94387 0.94251 1.22187 1.02059 1.02227 0.93215 1.23142 0.93881 0.90077 0.98744 1.67700 1.16289 1.09300 1.28686 1.23029 0.94010 1.01164 0.87563 1.22029 1.01638 0.95039 1.00587 0.92601 0.92243 0.89621 0.84484 0.87849 0.71778 0.77704 0.91638 0.83120 0.79937 0.80613 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.09 8.38 71.98 0.60 -4.49 16 2 C 0.23 8.34 0.52 2.86 0.00 8.34 16 3 C -0.13 -4.38 4.18 29.85 0.12 -4.25 16 4 C 0.48 16.79 7.38 71.23 0.53 17.32 16 5 O -0.53 -20.58 14.70 21.94 0.32 -20.26 16 6 O -0.52 -14.73 13.42 -51.45 -0.69 -15.42 16 7 N -0.74 -32.18 3.68 -430.55 -1.58 -33.76 16 8 C 0.55 29.96 7.16 86.36 0.62 30.58 16 9 O -0.61 -36.26 11.25 -4.33 -0.05 -36.30 16 10 C -0.58 -32.33 9.53 24.83 0.24 -32.09 16 11 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 12 C 0.04 2.09 5.49 85.30 0.47 2.56 16 13 N -0.81 -47.88 11.85 21.83 0.26 -47.62 16 14 Si 0.99 41.02 29.56 68.60 2.03 43.05 16 15 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 16 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 17 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 18 C -0.02 -0.62 3.23 -19.67 -0.06 -0.68 16 19 C -0.18 -4.40 8.62 22.36 0.19 -4.21 16 20 C 0.10 2.29 11.18 84.68 0.95 3.24 16 21 N -0.51 -13.67 10.36 -195.84 -2.03 -15.70 16 22 C 0.10 2.56 11.18 84.68 0.95 3.51 16 23 C -0.17 -5.04 9.05 22.36 0.20 -4.83 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 2.54 6.16 -2.39 -0.01 2.52 16 26 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.14 3.44 6.59 -2.39 -0.02 3.43 16 28 H 0.10 4.42 6.16 -2.39 -0.01 4.40 16 29 H 0.42 8.20 9.10 -74.06 -0.67 7.52 16 30 H 0.39 16.25 6.71 -92.71 -0.62 15.62 16 31 H 0.27 14.68 8.29 -92.71 -0.77 13.91 16 32 H 0.15 2.99 6.31 -2.91 -0.02 2.98 16 33 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.13 3.85 6.81 -2.91 -0.02 3.83 16 Total: -1.00 -74.79 298.46 2.93 -71.86 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -0.14 Total: 39.17 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 4.80 Total: 14.98 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -3.35 Total: -97.08 kcal Atomic # 8 Polarization: -71.57 SS G_CDS: -0.42 Total: -71.98 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -74.79 2.93 -71.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609728960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.196 kcal (2) G-P(sol) polarization free energy of solvation -74.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds