Wall clock time and date at job start Tue Mar 31 2020 01:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46998 * 2 1 4 4 C 1.46497 * 120.00122 * 278.34680 * 3 2 1 5 5 C 1.50707 * 109.47125 * 89.99846 * 4 3 2 6 6 H 1.07996 * 119.99513 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00192 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00281 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99875 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46935 * 90.00117 * 9 7 5 11 11 H 1.48501 * 109.46932 * 209.99964 * 9 7 5 12 12 H 1.48493 * 109.47169 * 330.00277 * 9 7 5 13 13 C 1.34774 * 120.00016 * 98.34931 * 3 2 1 14 14 O 1.21552 * 120.00024 * 186.34834 * 13 3 2 15 15 C 1.47855 * 120.00141 * 6.34522 * 13 3 2 16 16 C 1.39682 * 120.48619 * 317.21146 * 15 13 3 17 17 N 1.31732 * 120.89200 * 179.69922 * 16 15 13 18 18 C 1.31758 * 122.04470 * 0.59288 * 17 16 15 19 19 C 1.39679 * 120.87404 * 359.70228 * 18 17 16 20 20 C 1.47734 * 120.49355 * 179.97438 * 19 18 17 21 21 O 1.21469 * 119.99858 * 180.02562 * 20 19 18 22 22 O 1.34706 * 120.00273 * 0.02562 * 20 19 18 23 23 C 1.39711 * 120.49183 * 137.49082 * 15 13 3 24 24 H 1.09002 * 109.46778 * 299.99598 * 1 2 3 25 25 H 1.08997 * 109.47302 * 59.99536 * 1 2 3 26 26 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47465 * 119.99985 * 2 1 3 28 28 H 1.09002 * 109.46778 * 240.00402 * 2 1 3 29 29 H 1.08994 * 109.47602 * 210.00169 * 4 3 2 30 30 H 1.09001 * 109.47486 * 330.00328 * 4 3 2 31 31 H 0.96997 * 120.00649 * 180.02562 * 8 7 5 32 32 H 1.08007 * 119.55426 * 0.02562 * 16 15 13 33 33 H 1.08003 * 119.56107 * 179.68010 * 18 17 16 34 34 H 0.96699 * 117.00533 * 180.02562 * 22 20 19 35 35 H 1.07998 * 120.92278 * 359.97438 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0888 2.1333 -1.2552 5 6 0.7876 2.8597 -1.4794 6 1 -0.0118 2.7704 -0.7587 7 6 0.6176 3.6382 -2.6046 8 7 -0.5178 4.2725 -2.8000 9 14 2.0005 3.7931 -3.8509 10 1 1.8673 2.7245 -4.8734 11 1 1.9258 5.1215 -4.5105 12 1 3.3075 3.6565 -3.1594 13 6 2.4027 1.9601 1.1548 14 8 2.6979 3.1391 1.1749 15 6 2.4653 1.1611 2.3973 16 6 1.4481 0.2564 2.7101 17 7 1.4987 -0.4638 3.8120 18 6 2.4933 -0.3601 4.6698 19 6 3.5497 0.5242 4.4391 20 6 4.6604 0.6340 5.4069 21 8 5.5743 1.4063 5.1975 22 8 4.6597 -0.1221 6.5217 23 6 3.5399 1.3040 3.2786 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 2.9034 2.8554 -1.2010 30 1 2.2678 1.4452 -2.0815 31 1 -0.6376 4.8199 -3.5918 32 1 0.6113 0.1420 2.0369 33 1 2.4916 -0.9666 5.5635 34 1 5.4075 -0.0151 7.1253 35 1 4.3411 1.9973 3.0692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609999927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:40 Heat of formation + Delta-G solvation = -70.871443 kcal Electronic energy + Delta-G solvation = -21292.351157 eV Core-core repulsion = 17870.400593 eV Total energy + Delta-G solvation = -3421.950564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13802 -40.03830 -38.64213 -36.43430 -35.74477 -32.96485 -32.83409 -31.85792 -30.36113 -28.03469 -25.52886 -24.70162 -22.93449 -22.37592 -21.91149 -19.42270 -18.34542 -17.61891 -17.38161 -16.92487 -16.74769 -16.01063 -15.90228 -15.44482 -14.63965 -14.06133 -13.90186 -13.75466 -13.53919 -13.37582 -13.28787 -12.56275 -12.41581 -12.17624 -11.92495 -11.75946 -11.51042 -11.19800 -11.09692 -10.79740 -10.51708 -10.22048 -10.17760 -10.04823 -9.54687 -9.45814 -9.13612 -8.62930 -7.91375 -6.12432 -4.11551 0.17293 0.76354 2.19008 2.56660 3.09074 3.23691 3.32126 3.35990 3.53539 3.62258 4.09059 4.35992 4.43968 4.48205 4.62578 4.84948 4.99846 5.15573 5.20041 5.28640 5.55344 5.61925 5.69909 5.80255 6.00749 6.10582 6.13199 6.19603 6.55398 6.77744 6.85525 7.16247 7.46844 7.54149 7.57385 8.01349 8.39401 8.69906 8.91051 9.47019 11.00495 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028654 B = 0.004438 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.934841 B = 6308.043744 C = 6901.300593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.097 3.903 3 N -0.583 5.583 4 C 0.217 3.783 5 C -0.528 4.528 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.872 3.128 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.552 3.448 14 O -0.520 6.520 15 C -0.178 4.178 16 C 0.149 3.851 17 N -0.491 5.491 18 C 0.169 3.831 19 C -0.192 4.192 20 C 0.536 3.464 21 O -0.507 6.507 22 O -0.511 6.511 23 C 0.035 3.965 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.187 0.813 33 H 0.174 0.826 34 H 0.417 0.583 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.994 -13.618 13.842 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.027 4.027 3 N -0.313 5.313 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.097 0.903 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.337 3.663 14 O -0.396 6.396 15 C -0.183 4.183 16 C -0.007 4.007 17 N -0.199 5.199 18 C 0.011 3.989 19 C -0.195 4.195 20 C 0.379 3.621 21 O -0.395 6.395 22 O -0.323 6.323 23 C 0.009 3.991 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.203 0.797 33 H 0.191 0.809 34 H 0.276 0.724 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.302 -13.272 13.515 19.963 hybrid contribution 1.711 0.856 -0.492 1.976 sum 8.013 -12.416 13.024 19.697 Atomic orbital electron populations 1.22392 0.95347 1.01635 1.04314 1.21783 0.95303 0.83247 1.02319 1.47906 1.61758 1.13413 1.08264 1.19754 0.99150 0.91761 0.79675 1.21299 0.98922 1.28616 1.07790 0.90307 1.24842 0.95448 0.94829 0.97766 1.69879 1.24406 1.30933 1.28110 0.86904 0.83368 0.77991 0.81826 1.20085 1.20927 1.18900 1.17808 0.79140 0.86735 0.82622 1.90816 1.49251 1.14743 1.84837 1.21252 0.97561 1.00890 0.98587 1.24293 0.96992 0.86993 0.92419 1.67917 1.24745 1.23950 1.03282 1.23385 0.86660 0.91977 0.96905 1.19942 0.97690 1.04910 0.96992 1.20509 0.84787 0.76856 0.79913 1.90932 1.36461 1.36445 1.75703 1.84519 1.52187 1.62604 1.33016 1.21767 0.96198 0.92423 0.88744 0.92546 0.89053 0.92018 0.91208 0.90339 0.94073 0.95246 0.92509 0.79671 0.80886 0.72381 0.82540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 9.07 37.16 0.34 -2.24 16 2 C 0.10 1.42 5.63 -4.04 -0.02 1.40 16 3 N -0.58 -11.36 2.48 -176.17 -0.44 -11.80 16 4 C 0.22 5.03 4.21 -5.19 -0.02 5.01 16 5 C -0.53 -14.41 8.90 -34.44 -0.31 -14.71 16 6 H 0.08 2.34 7.72 -52.49 -0.41 1.93 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 9 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.55 11.05 7.32 -12.33 -0.09 10.96 16 14 O -0.52 -12.69 16.62 5.32 0.09 -12.60 16 15 C -0.18 -2.77 5.20 -104.87 -0.55 -3.32 16 16 C 0.15 2.02 8.55 -17.06 -0.15 1.87 16 17 N -0.49 -6.07 10.33 -12.56 -0.13 -6.20 16 18 C 0.17 1.79 10.78 -17.05 -0.18 1.61 16 19 C -0.19 -2.27 5.88 -104.89 -0.62 -2.89 16 20 C 0.54 5.85 8.28 34.61 0.29 6.13 16 21 O -0.51 -7.13 17.20 -19.24 -0.33 -7.46 16 22 O -0.51 -3.53 12.70 -40.51 -0.51 -4.04 16 23 C 0.03 0.49 9.36 -38.44 -0.36 0.14 16 24 H 0.06 0.81 6.16 -51.93 -0.32 0.49 16 25 H 0.09 1.63 7.04 -51.93 -0.37 1.26 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.87 4.84 -51.93 -0.25 0.61 16 28 H 0.08 1.04 8.02 -51.93 -0.42 0.63 16 29 H 0.04 1.04 6.58 -51.93 -0.34 0.70 16 30 H 0.03 0.64 7.40 -51.93 -0.38 0.25 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.19 2.40 3.42 -52.48 -0.18 2.22 16 33 H 0.17 1.30 7.61 -52.48 -0.40 0.90 16 34 H 0.42 1.02 9.11 45.56 0.42 1.43 16 35 H 0.16 2.32 7.73 -52.49 -0.41 1.92 16 LS Contribution 302.22 15.07 4.55 4.55 Total: -1.00 -34.84 302.22 -5.07 -39.92 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -2.64 Total: 1.55 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.77 Total: 5.94 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.21 Total: -44.08 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.76 Total: -24.11 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.84 -5.07 -39.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609999927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.953 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds