Wall clock time and date at job start Tue Mar 31 2020 01:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46998 * 2 1 4 4 C 1.46497 * 120.00122 * 278.34680 * 3 2 1 5 5 C 1.50707 * 109.47125 * 89.99846 * 4 3 2 6 6 H 1.07996 * 119.99513 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00192 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00281 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99875 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46935 * 90.00117 * 9 7 5 11 11 H 1.48501 * 109.46932 * 209.99964 * 9 7 5 12 12 H 1.48493 * 109.47169 * 330.00277 * 9 7 5 13 13 C 1.34774 * 120.00016 * 98.34931 * 3 2 1 14 14 O 1.21552 * 120.00024 * 186.34834 * 13 3 2 15 15 C 1.47855 * 120.00141 * 6.34522 * 13 3 2 16 16 C 1.39682 * 120.48619 * 317.21146 * 15 13 3 17 17 N 1.31732 * 120.89200 * 179.69922 * 16 15 13 18 18 C 1.31758 * 122.04470 * 0.59288 * 17 16 15 19 19 C 1.39679 * 120.87404 * 359.70228 * 18 17 16 20 20 C 1.47734 * 120.49355 * 179.97438 * 19 18 17 21 21 O 1.21469 * 119.99858 * 180.02562 * 20 19 18 22 22 O 1.34706 * 120.00273 * 0.02562 * 20 19 18 23 23 C 1.39711 * 120.49183 * 137.49082 * 15 13 3 24 24 H 1.09002 * 109.46778 * 299.99598 * 1 2 3 25 25 H 1.08997 * 109.47302 * 59.99536 * 1 2 3 26 26 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47465 * 119.99985 * 2 1 3 28 28 H 1.09002 * 109.46778 * 240.00402 * 2 1 3 29 29 H 1.08994 * 109.47602 * 210.00169 * 4 3 2 30 30 H 1.09001 * 109.47486 * 330.00328 * 4 3 2 31 31 H 0.96997 * 120.00649 * 180.02562 * 8 7 5 32 32 H 1.08007 * 119.55426 * 0.02562 * 16 15 13 33 33 H 1.08003 * 119.56107 * 179.68010 * 18 17 16 34 34 H 0.96699 * 117.00533 * 180.02562 * 22 20 19 35 35 H 1.07998 * 120.92278 * 359.97438 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0888 2.1333 -1.2552 5 6 0.7876 2.8597 -1.4794 6 1 -0.0118 2.7704 -0.7587 7 6 0.6176 3.6382 -2.6046 8 7 -0.5178 4.2725 -2.8000 9 14 2.0005 3.7931 -3.8509 10 1 1.8673 2.7245 -4.8734 11 1 1.9258 5.1215 -4.5105 12 1 3.3075 3.6565 -3.1594 13 6 2.4027 1.9601 1.1548 14 8 2.6979 3.1391 1.1749 15 6 2.4653 1.1611 2.3973 16 6 1.4481 0.2564 2.7101 17 7 1.4987 -0.4638 3.8120 18 6 2.4933 -0.3601 4.6698 19 6 3.5497 0.5242 4.4391 20 6 4.6604 0.6340 5.4069 21 8 5.5743 1.4063 5.1975 22 8 4.6597 -0.1221 6.5217 23 6 3.5399 1.3040 3.2786 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 2.9034 2.8554 -1.2010 30 1 2.2678 1.4452 -2.0815 31 1 -0.6376 4.8199 -3.5918 32 1 0.6113 0.1420 2.0369 33 1 2.4916 -0.9666 5.5635 34 1 5.4075 -0.0151 7.1253 35 1 4.3411 1.9973 3.0692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609999927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:39 Heat of formation + Delta-G solvation = -97.528497 kcal Electronic energy + Delta-G solvation = -21293.507093 eV Core-core repulsion = 17870.400593 eV Total energy + Delta-G solvation = -3423.106500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.21153 -41.08235 -39.94697 -37.33180 -37.16815 -34.90044 -33.91401 -33.21522 -31.74515 -29.83762 -26.49545 -26.07456 -24.27138 -23.93980 -22.95690 -20.71904 -19.29850 -19.06401 -18.70003 -18.50260 -17.75491 -17.23221 -17.00425 -16.76387 -16.35931 -15.43695 -15.15815 -15.07542 -14.81342 -14.51221 -14.40026 -14.38570 -13.82911 -13.61444 -13.35028 -13.08633 -12.66900 -12.62014 -12.41548 -12.15282 -12.02992 -12.00452 -11.64656 -11.34633 -11.25190 -10.78846 -10.66773 -10.38067 -9.57660 -8.29998 -6.33912 -0.81612 -0.33864 1.26279 1.33329 1.38048 1.47638 1.63064 1.81228 2.13777 2.33363 2.51634 3.03043 3.12302 3.29472 3.48146 3.54334 3.88319 3.90898 4.02635 4.30875 4.38537 4.49467 4.68423 4.71100 4.79052 4.87972 4.93089 4.98146 5.18139 5.44748 5.47793 5.53783 5.55634 6.24877 6.48086 6.50447 6.67889 6.88468 7.10733 7.30450 8.86386 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028654 B = 0.004438 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.934841 B = 6308.043744 C = 6901.300593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.092 3.908 3 N -0.587 5.587 4 C 0.223 3.777 5 C -0.527 4.527 6 H 0.038 0.962 7 C 0.013 3.987 8 N -0.945 5.945 9 Si 0.941 3.059 10 H -0.251 1.251 11 H -0.286 1.286 12 H -0.257 1.257 13 C 0.547 3.453 14 O -0.580 6.580 15 C -0.194 4.194 16 C 0.159 3.841 17 N -0.490 5.490 18 C 0.192 3.808 19 C -0.189 4.189 20 C 0.548 3.452 21 O -0.544 6.544 22 O -0.491 6.491 23 C 0.030 3.970 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.020 0.980 30 H 0.056 0.944 31 H 0.267 0.733 32 H 0.191 0.809 33 H 0.215 0.785 34 H 0.440 0.560 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.111 -16.698 15.233 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.030 4.030 3 N -0.316 5.316 4 C 0.101 3.899 5 C -0.565 4.565 6 H 0.057 0.943 7 C -0.185 4.185 8 N -0.585 5.585 9 Si 0.764 3.236 10 H -0.175 1.175 11 H -0.212 1.212 12 H -0.181 1.181 13 C 0.335 3.665 14 O -0.460 6.460 15 C -0.200 4.200 16 C 0.003 3.997 17 N -0.198 5.198 18 C 0.034 3.966 19 C -0.193 4.193 20 C 0.392 3.608 21 O -0.436 6.436 22 O -0.305 6.305 23 C 0.003 3.997 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.207 0.793 33 H 0.232 0.768 34 H 0.303 0.697 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.414 -16.435 14.946 23.419 hybrid contribution 1.319 1.728 -0.713 2.288 sum 8.734 -14.707 14.233 22.252 Atomic orbital electron populations 1.22325 0.95190 1.03549 1.02038 1.22128 0.95332 0.80763 1.04763 1.47980 1.61547 1.15020 1.07061 1.19459 0.95975 0.92104 0.82349 1.21503 0.99548 1.28785 1.06676 0.94320 1.25770 0.98060 0.94482 1.00208 1.70035 1.26868 1.32381 1.29205 0.85807 0.79988 0.78416 0.79340 1.17503 1.21195 1.18063 1.18481 0.77689 0.86414 0.83948 1.90767 1.51862 1.17423 1.85998 1.20796 0.99542 1.02306 0.97314 1.24264 0.96137 0.86291 0.93005 1.68049 1.25236 1.23575 1.02953 1.24012 0.84863 0.90654 0.97083 1.20009 0.98594 1.04398 0.96262 1.20244 0.83685 0.76440 0.80416 1.90938 1.37754 1.38208 1.76701 1.84454 1.53309 1.60917 1.31854 1.21699 0.95556 0.92720 0.89676 0.93124 0.93092 0.87878 0.88266 0.88350 0.96182 0.92595 0.92415 0.79270 0.76824 0.69686 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.83 9.07 71.98 0.65 -4.18 16 2 C 0.09 2.54 5.63 86.38 0.49 3.03 16 3 N -0.59 -23.14 2.48 -829.55 -2.06 -25.20 16 4 C 0.22 10.50 4.21 85.64 0.36 10.86 16 5 C -0.53 -29.89 8.90 25.60 0.23 -29.66 16 6 H 0.04 2.44 7.72 -2.91 -0.02 2.42 16 7 C 0.01 0.74 5.47 84.66 0.46 1.20 16 8 N -0.94 -58.83 13.96 21.45 0.30 -58.54 16 9 Si 0.94 43.61 27.47 68.60 1.88 45.50 16 10 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.26 -11.47 6.54 99.48 0.65 -10.82 16 13 C 0.55 22.62 7.32 86.79 0.64 23.25 16 14 O -0.58 -29.94 16.62 -3.88 -0.06 -30.01 16 15 C -0.19 -6.02 5.20 -20.03 -0.10 -6.12 16 16 C 0.16 4.01 8.55 85.06 0.73 4.74 16 17 N -0.49 -10.43 10.33 -193.65 -2.00 -12.43 16 18 C 0.19 3.27 10.78 85.05 0.92 4.19 16 19 C -0.19 -4.02 5.88 -20.04 -0.12 -4.13 16 20 C 0.55 10.52 8.28 70.33 0.58 11.10 16 21 O -0.54 -14.69 17.20 19.94 0.34 -14.34 16 22 O -0.49 -4.70 12.70 -56.16 -0.71 -5.42 16 23 C 0.03 0.84 9.36 23.01 0.22 1.05 16 24 H 0.05 1.45 6.16 -2.39 -0.01 1.44 16 25 H 0.05 1.85 7.04 -2.39 -0.02 1.83 16 26 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.10 2.21 4.84 -2.39 -0.01 2.19 16 28 H 0.10 2.36 8.02 -2.39 -0.02 2.34 16 29 H 0.02 1.04 6.58 -2.39 -0.02 1.02 16 30 H 0.06 2.35 7.40 -2.39 -0.02 2.33 16 31 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 32 H 0.19 4.59 3.42 -2.91 -0.01 4.58 16 33 H 0.22 1.93 7.61 -2.91 -0.02 1.90 16 34 H 0.44 0.31 9.11 -74.06 -0.67 -0.36 16 35 H 0.14 4.38 7.73 -2.91 -0.02 4.36 16 Total: -1.00 -80.79 302.22 3.16 -77.62 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.43 Total: 7.48 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 5.04 Total: 15.32 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -3.76 Total: -96.16 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.43 Total: -49.76 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.50 kcal Total: -80.79 3.16 -77.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609999927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.906 kcal (2) G-P(sol) polarization free energy of solvation -80.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds