Wall clock time and date at job start Mon Mar 30 2020 23:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47173 * 2 1 4 4 C 1.38585 * 120.47064 * 267.38192 * 3 2 1 5 5 C 1.38627 * 118.49669 * 180.24416 * 4 3 2 6 6 C 1.38596 * 119.36865 * 359.74870 * 5 4 3 7 7 N 1.31499 * 120.90671 * 359.97438 * 6 5 4 8 8 C 1.32811 * 121.63355 * 0.02562 * 7 6 5 9 9 C 1.48003 * 119.73186 * 179.97438 * 8 7 6 10 10 O 1.21570 * 120.00392 * 256.41429 * 9 8 7 11 11 N 1.34786 * 119.99987 * 76.41420 * 9 8 7 12 12 C 1.36782 * 119.99717 * 184.88441 * 11 9 8 13 13 H 1.07995 * 120.00159 * 351.83505 * 12 11 9 14 14 C 1.39106 * 119.99627 * 171.82676 * 12 11 9 15 15 N 1.31322 * 120.00262 * 339.69362 * 14 12 11 16 16 Si 1.86800 * 120.00115 * 159.69322 * 14 12 11 17 17 H 1.48499 * 109.46770 * 60.00132 * 16 14 12 18 18 H 1.48501 * 109.47508 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46917 * 300.00177 * 16 14 12 20 20 C 1.46492 * 119.99659 * 5.16390 * 11 9 8 21 21 C 1.50701 * 109.47051 * 266.40968 * 20 11 9 22 22 O 1.20822 * 119.99963 * 359.97438 * 21 20 11 23 23 O 1.34231 * 120.00147 * 180.02562 * 21 20 11 24 24 H 1.09007 * 109.47040 * 300.00029 * 1 2 3 25 25 H 1.08994 * 109.47276 * 59.99658 * 1 2 3 26 26 H 1.09002 * 109.47394 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46904 * 239.99745 * 2 1 3 28 28 H 1.08999 * 109.46883 * 120.00097 * 2 1 3 29 29 H 1.07995 * 120.75080 * 359.97438 * 4 3 2 30 30 H 1.07996 * 120.31380 * 179.72711 * 5 4 3 31 31 H 1.07994 * 119.54382 * 180.02562 * 6 5 4 32 32 H 0.96998 * 120.00628 * 179.97438 * 15 14 12 33 33 H 1.08997 * 109.47494 * 26.41291 * 20 11 9 34 34 H 1.09005 * 109.47100 * 146.41387 * 20 11 9 35 35 H 0.96693 * 117.00170 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3180 2.0651 -1.1932 5 6 2.7827 3.3703 -1.1453 6 6 2.9420 3.9904 0.0840 7 7 2.6582 3.3579 1.2014 8 6 2.2108 2.1074 1.1996 9 6 1.9049 1.4355 2.4824 10 8 2.6750 0.6110 2.9355 11 7 0.7727 1.7376 3.1483 12 6 0.5378 1.1923 4.3805 13 1 1.1901 0.4213 4.7631 14 6 -0.5412 1.6310 5.1410 15 7 -1.0879 2.7990 4.8927 16 14 -1.2127 0.5589 6.5154 17 1 -0.1446 0.3119 7.5171 18 1 -2.3545 1.2483 7.1683 19 1 -1.6730 -0.7361 5.9530 20 6 -0.2091 2.6452 2.5496 21 6 0.0535 4.0519 3.0222 22 8 0.9668 4.2734 3.7816 23 8 -0.7278 5.0585 2.6003 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1859 1.5604 -2.1388 30 1 3.0186 3.8988 -2.0571 31 1 3.3034 5.0073 0.1246 32 1 -1.8405 3.1048 5.4227 33 1 -0.1259 2.6053 1.4635 34 1 -1.2129 2.3430 2.8484 35 1 -0.5206 5.9432 2.9309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610068998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:50 Heat of formation + Delta-G solvation = -76.054021 kcal Electronic energy + Delta-G solvation = -22756.913757 eV Core-core repulsion = 19334.738460 eV Total energy + Delta-G solvation = -3422.175297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.33211 -38.95046 -37.76835 -35.20767 -34.41615 -34.32924 -32.13219 -31.42998 -29.51080 -27.71410 -25.54862 -24.05379 -23.49892 -21.29453 -20.88601 -19.69998 -17.21418 -17.00479 -16.64669 -16.42731 -15.75580 -15.33393 -15.01262 -14.37273 -14.23387 -14.14991 -13.61642 -13.50670 -13.05473 -13.00605 -12.59207 -12.45407 -11.90909 -11.80520 -11.65649 -11.57028 -11.10600 -10.92619 -10.69331 -10.50163 -10.34603 -10.17539 -9.54917 -9.49527 -9.30572 -8.99522 -8.73236 -8.45230 -8.02845 -6.51971 -3.91348 1.25655 1.52842 3.10748 3.21468 3.25459 3.45131 3.78152 3.98354 4.06167 4.28107 4.50438 4.79011 4.95241 4.98098 5.15239 5.23342 5.33360 5.46949 5.60857 5.66397 5.78634 5.87325 5.99591 6.12337 6.24857 6.29900 6.49607 6.54793 6.55107 6.68163 6.90063 7.48002 7.70412 7.85616 8.28311 8.30675 8.98250 9.16619 9.32656 9.73098 10.56083 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.007923 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.494415 B = 3533.352827 C = 4229.613737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.107 4.107 4 C -0.081 4.081 5 C -0.173 4.173 6 C 0.090 3.910 7 N -0.448 5.448 8 C 0.123 3.877 9 C 0.508 3.492 10 O -0.567 6.567 11 N -0.409 5.409 12 C -0.302 4.302 13 H 0.113 0.887 14 C 0.031 3.969 15 N -0.880 5.880 16 Si 0.936 3.064 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.271 1.271 20 C 0.152 3.848 21 C 0.500 3.500 22 O -0.495 6.495 23 O -0.540 6.540 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.274 0.726 33 H 0.065 0.935 34 H 0.128 0.872 35 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 1.040 -12.553 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 C -0.110 4.110 4 C -0.107 4.107 5 C -0.193 4.193 6 C -0.069 4.069 7 N -0.157 5.157 8 C -0.018 4.018 9 C 0.295 3.705 10 O -0.450 6.450 11 N -0.127 5.127 12 C -0.429 4.429 13 H 0.131 0.869 14 C -0.171 4.171 15 N -0.521 5.521 16 Si 0.762 3.238 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.197 1.197 20 C 0.026 3.974 21 C 0.339 3.661 22 O -0.378 6.378 23 O -0.351 6.351 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.146 0.854 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -0.816 0.803 -11.309 11.366 hybrid contribution -0.321 0.209 0.078 0.391 sum -1.137 1.012 -11.230 11.333 Atomic orbital electron populations 1.21781 0.94323 1.02165 1.02291 1.20576 0.96540 0.91651 1.03836 1.20945 0.99333 0.97844 0.92843 1.21376 0.97020 0.94602 0.97659 1.22189 1.01728 0.95910 0.99427 1.22815 0.96675 0.99824 0.87625 1.67876 1.09109 1.07919 1.30812 1.21470 0.95628 0.90256 0.94407 1.17344 0.82423 0.86177 0.84553 1.90642 1.48584 1.36742 1.69056 1.43266 1.15376 1.37445 1.16606 1.19741 1.11749 1.18501 0.92908 0.86929 1.25249 0.97319 0.95545 0.99001 1.69596 1.24490 1.16275 1.41704 0.85834 0.78381 0.79545 0.80044 1.19683 1.20915 1.19683 1.20752 0.97157 0.84850 0.94687 1.23254 0.78204 0.86618 0.77991 1.90599 1.31531 1.83553 1.32165 1.84492 1.59964 1.19826 1.70787 0.91778 0.92904 0.92041 0.90994 0.89259 0.84860 0.84998 0.82903 0.91467 0.91674 0.85441 0.75488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.89 37.16 0.37 -1.74 16 2 C -0.09 -1.37 5.64 -27.88 -0.16 -1.52 16 3 C -0.11 -1.84 5.18 -104.07 -0.54 -2.38 16 4 C -0.08 -1.09 9.84 -39.31 -0.39 -1.48 16 5 C -0.17 -2.23 10.12 -39.31 -0.40 -2.62 16 6 C 0.09 1.42 11.18 -17.56 -0.20 1.23 16 7 N -0.45 -9.43 10.30 -9.81 -0.10 -9.53 16 8 C 0.12 2.64 4.60 -83.02 -0.38 2.26 16 9 C 0.51 13.02 6.03 -12.25 -0.07 12.95 16 10 O -0.57 -16.19 16.07 5.30 0.09 -16.11 16 11 N -0.41 -10.60 2.12 -117.12 -0.25 -10.84 16 12 C -0.30 -8.33 9.41 -15.02 -0.14 -8.47 16 13 H 0.11 3.24 7.26 -52.49 -0.38 2.86 16 14 C 0.03 0.81 5.03 -17.45 -0.09 0.73 16 15 N -0.88 -22.91 8.42 55.50 0.47 -22.45 16 16 Si 0.94 20.41 29.60 -169.99 -5.03 15.38 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 C 0.15 3.51 4.49 -5.20 -0.02 3.49 16 21 C 0.50 11.96 6.19 36.01 0.22 12.18 16 22 O -0.49 -13.74 16.74 -18.75 -0.31 -14.05 16 23 O -0.54 -10.66 13.42 -39.26 -0.53 -11.19 16 24 H 0.06 1.07 6.83 -51.93 -0.35 0.71 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 28 H 0.09 1.65 6.75 -51.93 -0.35 1.30 16 29 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.07 1.34 6.22 -51.93 -0.32 1.02 16 34 H 0.13 2.98 6.38 -51.93 -0.33 2.65 16 35 H 0.39 6.08 9.10 45.56 0.41 6.50 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -34.62 305.00 -5.86 -40.48 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -2.99 Total: 9.11 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: -1.80 Total: 14.61 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.12 Total: -42.82 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.76 Total: -41.35 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.62 -5.86 -40.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610068998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.576 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds