Wall clock time and date at job start Mon Mar 30 2020 23:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47173 * 2 1 4 4 C 1.38585 * 120.47064 * 267.38192 * 3 2 1 5 5 C 1.38627 * 118.49669 * 180.24416 * 4 3 2 6 6 C 1.38596 * 119.36865 * 359.74870 * 5 4 3 7 7 N 1.31499 * 120.90671 * 359.97438 * 6 5 4 8 8 C 1.32811 * 121.63355 * 0.02562 * 7 6 5 9 9 C 1.48003 * 119.73186 * 179.97438 * 8 7 6 10 10 O 1.21570 * 120.00392 * 256.41429 * 9 8 7 11 11 N 1.34786 * 119.99987 * 76.41420 * 9 8 7 12 12 C 1.36782 * 119.99717 * 184.88441 * 11 9 8 13 13 H 1.07995 * 120.00159 * 351.83505 * 12 11 9 14 14 C 1.39106 * 119.99627 * 171.82676 * 12 11 9 15 15 N 1.31322 * 120.00262 * 339.69362 * 14 12 11 16 16 Si 1.86800 * 120.00115 * 159.69322 * 14 12 11 17 17 H 1.48499 * 109.46770 * 60.00132 * 16 14 12 18 18 H 1.48501 * 109.47508 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46917 * 300.00177 * 16 14 12 20 20 C 1.46492 * 119.99659 * 5.16390 * 11 9 8 21 21 C 1.50701 * 109.47051 * 266.40968 * 20 11 9 22 22 O 1.20822 * 119.99963 * 359.97438 * 21 20 11 23 23 O 1.34231 * 120.00147 * 180.02562 * 21 20 11 24 24 H 1.09007 * 109.47040 * 300.00029 * 1 2 3 25 25 H 1.08994 * 109.47276 * 59.99658 * 1 2 3 26 26 H 1.09002 * 109.47394 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46904 * 239.99745 * 2 1 3 28 28 H 1.08999 * 109.46883 * 120.00097 * 2 1 3 29 29 H 1.07995 * 120.75080 * 359.97438 * 4 3 2 30 30 H 1.07996 * 120.31380 * 179.72711 * 5 4 3 31 31 H 1.07994 * 119.54382 * 180.02562 * 6 5 4 32 32 H 0.96998 * 120.00628 * 179.97438 * 15 14 12 33 33 H 1.08997 * 109.47494 * 26.41291 * 20 11 9 34 34 H 1.09005 * 109.47100 * 146.41387 * 20 11 9 35 35 H 0.96693 * 117.00170 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3180 2.0651 -1.1932 5 6 2.7827 3.3703 -1.1453 6 6 2.9420 3.9904 0.0840 7 7 2.6582 3.3579 1.2014 8 6 2.2108 2.1074 1.1996 9 6 1.9049 1.4355 2.4824 10 8 2.6750 0.6110 2.9355 11 7 0.7727 1.7376 3.1483 12 6 0.5378 1.1923 4.3805 13 1 1.1901 0.4213 4.7631 14 6 -0.5412 1.6310 5.1410 15 7 -1.0879 2.7990 4.8927 16 14 -1.2127 0.5589 6.5154 17 1 -0.1446 0.3119 7.5171 18 1 -2.3545 1.2483 7.1683 19 1 -1.6730 -0.7361 5.9530 20 6 -0.2091 2.6452 2.5496 21 6 0.0535 4.0519 3.0222 22 8 0.9668 4.2734 3.7816 23 8 -0.7278 5.0585 2.6003 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1859 1.5604 -2.1388 30 1 3.0186 3.8988 -2.0571 31 1 3.3034 5.0073 0.1246 32 1 -1.8405 3.1048 5.4227 33 1 -0.1259 2.6053 1.4635 34 1 -1.2129 2.3430 2.8484 35 1 -0.5206 5.9432 2.9309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610068998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:49 Heat of formation + Delta-G solvation = -101.435754 kcal Electronic energy + Delta-G solvation = -22758.014391 eV Core-core repulsion = 19334.738460 eV Total energy + Delta-G solvation = -3423.275931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.82625 -40.69146 -39.56882 -37.08932 -36.29592 -35.63020 -33.92093 -32.88120 -30.76265 -29.61746 -27.34947 -25.31110 -24.97645 -22.92543 -22.31418 -21.35136 -19.12625 -18.80701 -18.42167 -17.80746 -17.42313 -17.00101 -16.48183 -16.15650 -16.05792 -15.60248 -14.99554 -14.90746 -14.66526 -14.42652 -14.03286 -13.75553 -13.60631 -13.54569 -13.41299 -13.02285 -12.72443 -12.46354 -12.23863 -12.17452 -12.05246 -11.90964 -11.46265 -10.96860 -10.95867 -10.70818 -10.23692 -10.00245 -9.83030 -8.51449 -5.99348 -0.00432 0.37025 1.31501 1.40058 1.51980 1.66456 1.90845 2.20777 2.50658 2.74027 2.84086 3.00934 3.54530 3.67973 3.88179 4.04699 4.09176 4.16563 4.39153 4.45549 4.51050 4.61631 4.68708 4.86337 4.93219 5.02755 5.09204 5.18313 5.34032 5.38217 5.40223 5.74617 5.89267 6.00954 6.29448 6.96849 7.03473 7.20686 7.51350 7.79205 8.55073 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.007923 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.494415 B = 3533.352827 C = 4229.613737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.110 4.110 4 C -0.069 4.069 5 C -0.142 4.142 6 C 0.074 3.926 7 N -0.497 5.497 8 C 0.079 3.921 9 C 0.501 3.499 10 O -0.620 6.620 11 N -0.418 5.418 12 C -0.344 4.344 13 H 0.084 0.916 14 C 0.003 3.997 15 N -0.890 5.890 16 Si 0.999 3.001 17 H -0.281 1.281 18 H -0.268 1.268 19 H -0.260 1.260 20 C 0.159 3.841 21 C 0.508 3.492 22 O -0.541 6.541 23 O -0.524 6.524 24 H 0.029 0.971 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.044 0.956 29 H 0.184 0.816 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.280 0.720 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 1.850 -15.850 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.095 4.095 5 C -0.162 4.162 6 C -0.085 4.085 7 N -0.208 5.208 8 C -0.059 4.059 9 C 0.290 3.710 10 O -0.506 6.506 11 N -0.135 5.135 12 C -0.471 4.471 13 H 0.101 0.899 14 C -0.199 4.199 15 N -0.529 5.529 16 Si 0.822 3.178 17 H -0.206 1.206 18 H -0.192 1.192 19 H -0.184 1.184 20 C 0.034 3.966 21 C 0.349 3.651 22 O -0.428 6.428 23 O -0.337 6.337 24 H 0.048 0.952 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.130 0.870 28 H 0.063 0.937 29 H 0.201 0.799 30 H 0.203 0.797 31 H 0.196 0.804 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.139 0.861 35 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.921 1.653 -14.634 14.851 hybrid contribution 0.043 0.090 0.983 0.988 sum -1.878 1.743 -13.650 13.889 Atomic orbital electron populations 1.21761 0.93401 1.03020 1.01945 1.20605 0.97342 0.91017 1.03549 1.21149 0.99126 0.98252 0.92778 1.21921 0.94957 0.94780 0.97802 1.22735 0.97996 0.95463 0.99971 1.23392 0.96534 1.00857 0.87699 1.67666 1.10769 1.08295 1.34047 1.20865 1.00045 0.91464 0.93502 1.18150 0.81505 0.85335 0.85976 1.90561 1.50059 1.38970 1.71048 1.43360 1.16167 1.37788 1.16170 1.19670 1.13098 1.19594 0.94771 0.89859 1.26043 0.96536 0.96433 1.00858 1.69658 1.24295 1.16707 1.42282 0.84915 0.77606 0.78393 0.76888 1.20635 1.19237 1.18439 1.20712 0.95952 0.84180 0.95801 1.23295 0.77471 0.87390 0.76901 1.90581 1.33518 1.84377 1.34365 1.84417 1.58539 1.20565 1.70132 0.95214 0.89935 0.90695 0.87002 0.93676 0.79907 0.79676 0.80446 0.90989 0.89358 0.86094 0.73097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.89 71.98 0.71 -3.20 16 2 C -0.09 -2.63 5.64 29.85 0.17 -2.46 16 3 C -0.11 -3.63 5.18 -19.51 -0.10 -3.73 16 4 C -0.07 -1.53 9.84 22.45 0.22 -1.31 16 5 C -0.14 -2.93 10.12 22.45 0.23 -2.70 16 6 C 0.07 2.18 11.18 84.83 0.95 3.13 16 7 N -0.50 -21.06 10.30 -184.95 -1.90 -22.97 16 8 C 0.08 3.49 4.60 41.86 0.19 3.68 16 9 C 0.50 27.40 6.03 86.83 0.52 27.92 16 10 O -0.62 -38.47 16.07 -3.94 -0.06 -38.53 16 11 N -0.42 -22.91 2.12 -642.73 -1.37 -24.27 16 12 C -0.34 -20.22 9.41 84.13 0.79 -19.43 16 13 H 0.08 5.23 7.26 -2.91 -0.02 5.21 16 14 C 0.00 0.15 5.03 84.98 0.43 0.58 16 15 N -0.89 -47.03 8.42 21.69 0.18 -46.85 16 16 Si 1.00 42.75 29.60 68.60 2.03 44.79 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 C 0.16 7.57 4.49 85.63 0.38 7.95 16 21 C 0.51 24.61 6.19 71.24 0.44 25.05 16 22 O -0.54 -30.99 16.74 21.98 0.37 -30.63 16 23 O -0.52 -20.17 13.42 -51.42 -0.69 -20.86 16 24 H 0.03 1.00 6.83 -2.38 -0.02 0.98 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.11 2.40 8.08 -2.39 -0.02 2.38 16 28 H 0.04 1.76 6.75 -2.39 -0.02 1.74 16 29 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 30 H 0.19 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 32 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 33 H 0.09 3.71 6.22 -2.39 -0.01 3.69 16 34 H 0.12 5.81 6.38 -2.38 -0.02 5.80 16 35 H 0.41 12.21 9.10 -74.06 -0.67 11.54 16 Total: -1.00 -83.29 305.00 3.96 -79.33 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.46 Total: 24.51 kcal Atomic # 6 Polarization: 30.54 SS G_CDS: 4.94 Total: 35.48 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -3.09 Total: -94.09 kcal Atomic # 8 Polarization: -89.63 SS G_CDS: -0.39 Total: -90.02 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.79 kcal Total: -83.29 3.96 -79.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610068998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.106 kcal (2) G-P(sol) polarization free energy of solvation -83.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds