Wall clock time and date at job start Mon Mar 30 2020 23:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47165 * 2 1 4 4 C 1.38381 * 120.34247 * 270.00267 * 3 2 1 5 5 N 1.31928 * 121.09097 * 179.97438 * 4 3 2 6 6 C 1.31679 * 121.88786 * 359.97438 * 5 4 3 7 7 C 1.39598 * 120.55959 * 0.02562 * 6 5 4 8 8 C 1.47722 * 120.56817 * 180.02562 * 7 6 5 9 9 O 1.21588 * 120.00133 * 131.64261 * 8 7 6 10 10 N 1.34775 * 119.99700 * 311.64969 * 8 7 6 11 11 C 1.36877 * 119.99699 * 185.07721 * 10 8 7 12 12 H 1.08000 * 120.00421 * 7.59361 * 11 10 8 13 13 C 1.39052 * 119.99741 * 187.59629 * 11 10 8 14 14 N 1.31352 * 120.00319 * 14.95617 * 13 11 10 15 15 Si 1.86806 * 119.99618 * 194.95442 * 13 11 10 16 16 H 1.48499 * 109.47097 * 90.00265 * 15 13 11 17 17 H 1.48495 * 109.46838 * 209.99988 * 15 13 11 18 18 H 1.48495 * 109.47118 * 329.99951 * 15 13 11 19 19 C 1.46499 * 120.00614 * 5.07226 * 10 8 7 20 20 C 1.50702 * 109.47127 * 95.08973 * 19 10 8 21 21 O 1.20822 * 119.99654 * 0.02562 * 20 19 10 22 22 O 1.34225 * 120.00048 * 180.02562 * 20 19 10 23 23 C 1.38327 * 120.34694 * 89.99970 * 3 2 1 24 24 H 1.09005 * 109.46697 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47256 * 300.00169 * 1 2 3 26 26 H 1.09002 * 109.47129 * 60.00133 * 1 2 3 27 27 H 1.09005 * 109.46975 * 239.99899 * 2 1 3 28 28 H 1.09002 * 109.47129 * 119.99867 * 2 1 3 29 29 H 1.07994 * 119.45287 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.72484 * 180.02562 * 6 5 4 31 31 H 0.96997 * 120.00444 * 179.97438 * 14 13 11 32 32 H 1.08995 * 109.47255 * 215.09542 * 19 10 8 33 33 H 1.09003 * 109.46885 * 335.09626 * 19 10 8 34 34 H 0.96700 * 117.00145 * 179.97438 * 22 20 19 35 35 H 1.07998 * 120.85943 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2654 2.0799 -1.1943 5 7 2.7046 3.3238 -1.2115 6 6 2.9404 3.9937 -0.1026 7 6 2.7306 3.4002 1.1434 8 6 2.9945 4.1517 2.3875 9 8 2.1650 4.1667 3.2763 10 7 4.1548 4.8208 2.5372 11 6 4.4445 5.4303 3.7281 12 1 3.8051 5.2741 4.5843 13 6 5.5621 6.2506 3.8354 14 7 6.1690 6.6789 2.7520 15 14 6.2004 6.7437 5.5204 16 1 7.1969 5.7450 5.9839 17 1 6.8419 8.0802 5.4349 18 1 5.0698 6.7978 6.4816 19 6 5.1061 4.8957 1.4256 20 6 4.8853 6.1755 0.6610 21 8 4.0223 6.9460 1.0092 22 8 5.6474 6.4592 -0.4069 23 6 2.2653 2.0797 1.1937 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0838 1.5678 -2.1276 30 1 3.2992 5.0109 -0.1575 31 1 6.9484 7.2514 2.8269 32 1 6.1235 4.8766 1.8161 33 1 4.9559 4.0449 0.7609 34 1 5.4683 7.2915 -0.8654 35 1 2.0923 1.5892 2.1402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610069411.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:52 Heat of formation + Delta-G solvation = -75.900828 kcal Electronic energy + Delta-G solvation = -22059.553070 eV Core-core repulsion = 18637.384416 eV Total energy + Delta-G solvation = -3422.168654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.42749 -39.17194 -37.98037 -35.34039 -34.67337 -34.52312 -32.25118 -31.40744 -29.62533 -27.79975 -25.55224 -24.26066 -23.44569 -21.70323 -21.09418 -19.33312 -17.26336 -17.13422 -16.85207 -16.67462 -16.03410 -15.62356 -14.90991 -14.59513 -14.28209 -14.19694 -13.84540 -13.69290 -13.13571 -12.85888 -12.80533 -12.51634 -12.10666 -11.89828 -11.81529 -11.52637 -11.44150 -11.04891 -11.00323 -10.49448 -10.45067 -10.38910 -9.68801 -9.52941 -9.41337 -9.15977 -8.75004 -8.51574 -8.15646 -6.58906 -4.01419 1.14281 1.47014 3.05877 3.16794 3.22773 3.37242 3.57948 3.88841 4.03293 4.22266 4.49613 4.67810 4.79339 4.92889 5.02933 5.16175 5.22199 5.30359 5.36173 5.48435 5.68325 5.79573 5.81732 5.93198 5.96959 6.13994 6.37915 6.39884 6.49087 6.63713 6.86274 7.38333 7.52908 7.76875 8.14632 8.20702 8.91222 9.01573 9.15134 9.64704 10.47050 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023258 B = 0.005970 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.598757 B = 4689.076144 C = 5545.597283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 C -0.142 4.142 4 C 0.097 3.903 5 N -0.481 5.481 6 C 0.110 3.890 7 C -0.141 4.141 8 C 0.486 3.514 9 O -0.571 6.571 10 N -0.416 5.416 11 C -0.291 4.291 12 H 0.114 0.886 13 C 0.028 3.972 14 N -0.888 5.888 15 Si 0.943 3.057 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.268 1.268 19 C 0.139 3.861 20 C 0.499 3.501 21 O -0.511 6.511 22 O -0.531 6.531 23 C -0.037 4.037 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.276 0.724 32 H 0.138 0.862 33 H 0.075 0.925 34 H 0.392 0.608 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 -9.673 -7.467 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.144 4.144 4 C -0.060 4.060 5 N -0.189 5.189 6 C -0.048 4.048 7 C -0.146 4.146 8 C 0.275 3.725 9 O -0.455 6.455 10 N -0.134 5.134 11 C -0.418 4.418 12 H 0.132 0.868 13 C -0.173 4.173 14 N -0.529 5.529 15 Si 0.769 3.231 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.192 1.192 19 C 0.012 3.988 20 C 0.340 3.660 21 O -0.398 6.398 22 O -0.342 6.342 23 C -0.064 4.064 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.170 0.830 30 H 0.170 0.830 31 H 0.087 0.913 32 H 0.155 0.845 33 H 0.092 0.908 34 H 0.249 0.751 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.670 -9.257 -7.510 12.036 hybrid contribution 0.245 0.807 1.120 1.403 sum -1.425 -8.449 -6.389 10.688 Atomic orbital electron populations 1.21773 0.94676 1.01638 1.02488 1.20439 0.96171 0.91751 1.03071 1.20812 1.01708 0.97884 0.93972 1.22680 0.95413 0.90704 0.97220 1.67647 1.11816 1.08341 1.31075 1.23145 0.95076 0.99649 0.86931 1.21292 1.01519 0.95785 0.96013 1.17630 0.82661 0.85325 0.86881 1.90640 1.44700 1.67140 1.43011 1.43401 1.14482 1.44375 1.11124 1.19897 1.09228 1.24794 0.87866 0.86837 1.25303 0.96881 0.95405 0.99741 1.69491 1.21898 1.33742 1.27815 0.85642 0.78994 0.77716 0.80733 1.20088 1.20831 1.19192 1.21040 0.98795 0.90719 0.88210 1.23407 0.77020 0.89361 0.76211 1.90629 1.34494 1.49373 1.65259 1.84517 1.61838 1.44664 1.43140 1.21499 0.93783 0.92642 0.98449 0.92352 0.92339 0.92541 0.90739 0.90755 0.83003 0.83021 0.91296 0.84496 0.90758 0.75115 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.90 37.16 0.37 -1.02 16 2 C -0.08 -0.76 6.08 -27.88 -0.17 -0.93 16 3 C -0.14 -1.96 5.15 -104.54 -0.54 -2.49 16 4 C 0.10 1.39 10.85 -17.46 -0.19 1.20 16 5 N -0.48 -8.42 10.34 -12.89 -0.13 -8.55 16 6 C 0.11 2.16 8.72 -17.11 -0.15 2.01 16 7 C -0.14 -2.89 4.96 -104.82 -0.52 -3.41 16 8 C 0.49 12.15 7.21 -12.39 -0.09 12.06 16 9 O -0.57 -15.99 16.64 5.29 0.09 -15.90 16 10 N -0.42 -10.58 2.15 -117.21 -0.25 -10.83 16 11 C -0.29 -7.88 9.36 -15.00 -0.14 -8.02 16 12 H 0.11 3.20 7.25 -52.49 -0.38 2.82 16 13 C 0.03 0.72 5.18 -17.45 -0.09 0.63 16 14 N -0.89 -22.48 8.15 55.50 0.45 -22.03 16 15 Si 0.94 20.19 29.58 -169.99 -5.03 15.16 16 16 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 C 0.14 3.11 4.81 -5.19 -0.02 3.08 16 20 C 0.50 11.33 3.79 36.01 0.14 11.46 16 21 O -0.51 -13.48 16.46 -18.75 -0.31 -13.79 16 22 O -0.53 -9.92 13.42 -39.24 -0.53 -10.45 16 23 C -0.04 -0.63 9.56 -38.85 -0.37 -1.00 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.15 3.19 4.51 -52.48 -0.24 2.96 16 31 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.14 3.15 6.26 -51.93 -0.33 2.82 16 33 H 0.07 1.48 5.45 -51.93 -0.28 1.19 16 34 H 0.39 5.68 9.10 45.56 0.41 6.09 16 35 H 0.14 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -32.79 301.24 -5.85 -38.63 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -2.90 Total: 9.65 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: -1.78 Total: 13.57 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.07 Total: -41.41 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.75 Total: -40.14 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.79 -5.85 -38.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610069411.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.267 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds