Wall clock time and date at job start Mon Mar 30 2020 23:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47165 * 2 1 4 4 C 1.38381 * 120.34247 * 270.00267 * 3 2 1 5 5 N 1.31928 * 121.09097 * 179.97438 * 4 3 2 6 6 C 1.31679 * 121.88786 * 359.97438 * 5 4 3 7 7 C 1.39598 * 120.55959 * 0.02562 * 6 5 4 8 8 C 1.47722 * 120.56817 * 180.02562 * 7 6 5 9 9 O 1.21588 * 120.00133 * 131.64261 * 8 7 6 10 10 N 1.34775 * 119.99700 * 311.64969 * 8 7 6 11 11 C 1.36877 * 119.99699 * 185.07721 * 10 8 7 12 12 H 1.08000 * 120.00421 * 7.59361 * 11 10 8 13 13 C 1.39052 * 119.99741 * 187.59629 * 11 10 8 14 14 N 1.31352 * 120.00319 * 14.95617 * 13 11 10 15 15 Si 1.86806 * 119.99618 * 194.95442 * 13 11 10 16 16 H 1.48499 * 109.47097 * 90.00265 * 15 13 11 17 17 H 1.48495 * 109.46838 * 209.99988 * 15 13 11 18 18 H 1.48495 * 109.47118 * 329.99951 * 15 13 11 19 19 C 1.46499 * 120.00614 * 5.07226 * 10 8 7 20 20 C 1.50702 * 109.47127 * 95.08973 * 19 10 8 21 21 O 1.20822 * 119.99654 * 0.02562 * 20 19 10 22 22 O 1.34225 * 120.00048 * 180.02562 * 20 19 10 23 23 C 1.38327 * 120.34694 * 89.99970 * 3 2 1 24 24 H 1.09005 * 109.46697 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47256 * 300.00169 * 1 2 3 26 26 H 1.09002 * 109.47129 * 60.00133 * 1 2 3 27 27 H 1.09005 * 109.46975 * 239.99899 * 2 1 3 28 28 H 1.09002 * 109.47129 * 119.99867 * 2 1 3 29 29 H 1.07994 * 119.45287 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.72484 * 180.02562 * 6 5 4 31 31 H 0.96997 * 120.00444 * 179.97438 * 14 13 11 32 32 H 1.08995 * 109.47255 * 215.09542 * 19 10 8 33 33 H 1.09003 * 109.46885 * 335.09626 * 19 10 8 34 34 H 0.96700 * 117.00145 * 179.97438 * 22 20 19 35 35 H 1.07998 * 120.85943 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2654 2.0799 -1.1943 5 7 2.7046 3.3238 -1.2115 6 6 2.9404 3.9937 -0.1026 7 6 2.7306 3.4002 1.1434 8 6 2.9945 4.1517 2.3875 9 8 2.1650 4.1667 3.2763 10 7 4.1548 4.8208 2.5372 11 6 4.4445 5.4303 3.7281 12 1 3.8051 5.2741 4.5843 13 6 5.5621 6.2506 3.8354 14 7 6.1690 6.6789 2.7520 15 14 6.2004 6.7437 5.5204 16 1 7.1969 5.7450 5.9839 17 1 6.8419 8.0802 5.4349 18 1 5.0698 6.7978 6.4816 19 6 5.1061 4.8957 1.4256 20 6 4.8853 6.1755 0.6610 21 8 4.0223 6.9460 1.0092 22 8 5.6474 6.4592 -0.4069 23 6 2.2653 2.0797 1.1937 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0838 1.5678 -2.1276 30 1 3.2992 5.0109 -0.1575 31 1 6.9484 7.2514 2.8269 32 1 6.1235 4.8766 1.8161 33 1 4.9559 4.0449 0.7609 34 1 5.4683 7.2915 -0.8654 35 1 2.0923 1.5892 2.1402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610069411.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:51 Heat of formation + Delta-G solvation = -98.752839 kcal Electronic energy + Delta-G solvation = -22060.544007 eV Core-core repulsion = 18637.384416 eV Total energy + Delta-G solvation = -3423.159592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.98910 -40.80235 -39.78223 -37.17307 -36.41689 -35.70443 -34.05856 -32.96999 -30.78103 -29.60022 -27.37257 -25.37572 -24.96024 -23.05590 -22.71051 -20.97527 -19.16732 -18.86999 -18.43758 -18.15867 -17.55374 -17.29017 -16.71789 -16.26352 -16.04574 -15.36780 -15.32285 -14.82411 -14.60543 -14.56809 -14.14096 -13.83906 -13.67099 -13.55550 -13.28662 -13.09723 -12.68160 -12.48089 -12.38193 -12.20717 -12.16446 -11.83237 -11.60490 -11.08057 -11.04972 -10.79496 -10.35357 -10.10898 -9.92309 -8.53128 -6.05322 -0.23261 0.13746 1.32749 1.39521 1.52689 1.61168 1.81641 2.13589 2.44744 2.66270 2.77607 3.09103 3.32778 3.62317 3.77898 3.83264 3.92998 4.10267 4.16565 4.38973 4.53360 4.59496 4.73119 4.84520 4.85822 4.96808 5.03910 5.15463 5.34029 5.36863 5.42146 5.61238 5.82695 5.91441 6.24492 6.81039 6.94117 7.14113 7.38425 7.72174 8.50970 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023258 B = 0.005970 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.598757 B = 4689.076144 C = 5545.597283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 C -0.121 4.121 4 C 0.109 3.891 5 N -0.489 5.489 6 C 0.100 3.900 7 C -0.166 4.166 8 C 0.477 3.523 9 O -0.619 6.619 10 N -0.426 5.426 11 C -0.334 4.334 12 H 0.087 0.913 13 C 0.000 4.000 14 N -0.895 5.895 15 Si 1.006 2.994 16 H -0.257 1.257 17 H -0.275 1.275 18 H -0.277 1.277 19 C 0.142 3.858 20 C 0.509 3.491 21 O -0.555 6.555 22 O -0.516 6.516 23 C -0.043 4.043 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.201 0.799 30 H 0.132 0.868 31 H 0.281 0.719 32 H 0.131 0.869 33 H 0.099 0.901 34 H 0.414 0.586 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 -11.688 -9.375 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.123 4.123 4 C -0.048 4.048 5 N -0.197 5.197 6 C -0.057 4.057 7 C -0.172 4.172 8 C 0.267 3.733 9 O -0.506 6.506 10 N -0.143 5.143 11 C -0.461 4.461 12 H 0.105 0.895 13 C -0.201 4.201 14 N -0.536 5.536 15 Si 0.829 3.171 16 H -0.182 1.182 17 H -0.200 1.200 18 H -0.202 1.202 19 C 0.017 3.983 20 C 0.352 3.648 21 O -0.445 6.445 22 O -0.328 6.328 23 C -0.069 4.069 24 H 0.100 0.900 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.218 0.782 30 H 0.150 0.850 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.116 0.884 34 H 0.273 0.727 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.076 -11.266 -9.477 14.762 hybrid contribution 0.034 1.344 1.546 2.049 sum -1.042 -9.922 -7.931 12.745 Atomic orbital electron populations 1.21781 0.94073 1.02982 1.01724 1.20588 0.96438 0.88938 1.05180 1.21246 0.99150 0.99569 0.92321 1.23518 0.92612 0.89427 0.99258 1.67697 1.12440 1.09860 1.29737 1.22777 0.96435 0.99223 0.87240 1.20979 1.04814 0.97213 0.94160 1.18369 0.81949 0.85082 0.87861 1.90574 1.46121 1.68773 1.45157 1.43536 1.15107 1.44185 1.11442 1.19823 1.10522 1.27378 0.88338 0.89521 1.26094 0.96153 0.94484 1.03322 1.69563 1.21733 1.33199 1.29081 0.84741 0.78223 0.77900 0.76283 1.18194 1.20033 1.20189 1.21052 0.97636 0.91790 0.87872 1.23324 0.76316 0.88770 0.76394 1.90611 1.36348 1.50701 1.66816 1.84441 1.60402 1.46076 1.41875 1.21677 0.93520 0.91525 1.00206 0.90021 0.94283 0.92203 0.87426 0.89958 0.78237 0.85045 0.90808 0.85154 0.88351 0.72655 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.90 71.98 0.71 -1.52 16 2 C -0.07 -1.14 6.08 29.85 0.18 -0.96 16 3 C -0.12 -2.97 5.15 -19.81 -0.10 -3.07 16 4 C 0.11 2.70 10.85 84.71 0.92 3.62 16 5 N -0.49 -16.17 10.34 -194.68 -2.01 -18.18 16 6 C 0.10 3.95 8.72 85.04 0.74 4.69 16 7 C -0.17 -6.98 4.96 -19.99 -0.10 -7.08 16 8 C 0.48 25.15 7.21 86.75 0.63 25.78 16 9 O -0.62 -37.00 16.64 -3.99 -0.07 -37.06 16 10 N -0.43 -22.71 2.15 -643.01 -1.38 -24.09 16 11 C -0.33 -19.01 9.36 84.10 0.79 -18.22 16 12 H 0.09 5.27 7.25 -2.91 -0.02 5.24 16 13 C 0.00 0.00 5.18 84.96 0.44 0.44 16 14 N -0.90 -45.70 8.15 21.68 0.18 -45.52 16 15 Si 1.01 41.89 29.58 68.60 2.03 43.92 16 16 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 17 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 19 C 0.14 6.52 4.81 85.63 0.41 6.93 16 20 C 0.51 23.46 3.79 71.24 0.27 23.73 16 21 O -0.55 -30.19 16.46 21.98 0.36 -29.83 16 22 O -0.52 -18.85 13.42 -51.37 -0.69 -19.54 16 23 C -0.04 -1.43 9.56 22.74 0.22 -1.21 16 24 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.11 1.06 8.09 -2.38 -0.02 1.04 16 28 H 0.08 1.21 8.09 -2.39 -0.02 1.20 16 29 H 0.20 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.13 5.69 4.51 -2.91 -0.01 5.68 16 31 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 32 H 0.13 6.11 6.26 -2.39 -0.01 6.09 16 33 H 0.10 3.97 5.45 -2.39 -0.01 3.96 16 34 H 0.41 11.45 9.10 -74.06 -0.67 10.78 16 35 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -75.33 301.24 3.99 -71.34 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.47 Total: 25.84 kcal Atomic # 6 Polarization: 28.02 SS G_CDS: 5.11 Total: 33.12 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -3.22 Total: -87.80 kcal Atomic # 8 Polarization: -86.04 SS G_CDS: -0.39 Total: -86.43 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -75.33 3.99 -71.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610069411.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.410 kcal (2) G-P(sol) polarization free energy of solvation -75.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds