Wall clock time and date at job start Tue Mar 31 2020 00:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 120.00082 * 2 1 4 4 O 1.42896 * 109.47327 * 135.00086 * 3 2 1 5 5 N 1.41603 * 114.00025 * 180.02562 * 4 3 2 6 6 C 1.34783 * 119.99823 * 179.97438 * 5 4 3 7 7 O 1.21579 * 119.99932 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99448 * 179.97438 * 6 5 4 9 9 C 1.39946 * 119.99608 * 174.73691 * 8 6 5 10 10 C 1.38954 * 120.03543 * 326.33782 * 9 8 6 11 11 C 1.38166 * 120.06957 * 180.02562 * 10 9 8 12 12 C 1.38171 * 120.13394 * 359.72130 * 11 10 9 13 13 C 1.38914 * 120.06955 * 0.55549 * 12 11 10 14 14 O 1.35749 * 120.03309 * 179.72177 * 13 12 11 15 15 C 1.34834 * 117.00022 * 173.81879 * 14 13 12 16 16 H 1.07995 * 119.99824 * 354.59952 * 15 14 13 17 17 C 1.38647 * 119.99947 * 174.59880 * 15 14 13 18 18 N 1.31563 * 120.00020 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46756 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46979 * 120.00017 * 19 17 15 22 22 H 1.48495 * 109.47523 * 240.00602 * 19 17 15 23 23 C 1.38712 * 120.03423 * 146.35870 * 9 8 6 24 24 H 1.08006 * 120.00016 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00065 * 180.02562 * 1 2 3 26 26 H 1.08006 * 120.00016 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47056 * 14.99348 * 3 2 1 28 28 H 1.09004 * 109.46859 * 254.99992 * 3 2 1 29 29 H 0.96998 * 120.00175 * 359.97438 * 5 4 3 30 30 H 0.96998 * 120.00749 * 354.73789 * 8 6 5 31 31 H 1.07998 * 119.97096 * 359.97438 * 10 9 8 32 32 H 1.07996 * 119.93563 * 179.97438 * 11 10 9 33 33 H 1.07999 * 119.96385 * 180.27555 * 12 11 10 34 34 H 0.96999 * 119.99771 * 180.02562 * 18 17 15 35 35 H 1.07995 * 120.07093 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2413 0.9526 5 7 3.9005 2.4245 1.0321 6 6 4.9352 2.4964 1.8929 7 8 5.2036 1.5457 2.6015 8 7 5.6720 3.6224 1.9680 9 6 6.6753 3.7386 2.9368 10 6 6.5144 3.1392 4.1800 11 6 7.5042 3.2539 5.1372 12 6 8.6591 3.9598 4.8596 13 6 8.8233 4.5663 3.6206 14 8 9.9558 5.2644 3.3507 15 6 10.1092 5.7187 2.0905 16 1 9.3935 5.4482 1.3282 17 6 11.1855 6.5330 1.7733 18 7 12.0575 6.8621 2.7018 19 14 11.3984 7.1619 0.0272 20 1 10.2914 6.6515 -0.8210 21 1 11.3754 8.6467 0.0297 22 1 12.6969 6.6877 -0.5149 23 6 7.8311 4.4528 2.6571 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3854 2.1161 0.2659 28 1 2.4754 1.4867 -0.9927 29 1 3.6861 3.1831 0.4670 30 1 5.5071 4.3522 1.3508 31 1 5.6145 2.5836 4.3987 32 1 7.3768 2.7875 6.1028 33 1 9.4329 4.0440 5.6082 34 1 12.8103 7.4321 2.4800 35 1 7.9585 4.9195 1.6916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665954835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:59 Heat of formation + Delta-G solvation = 12.549536 kcal Electronic energy + Delta-G solvation = -20255.297520 eV Core-core repulsion = 16836.964362 eV Total energy + Delta-G solvation = -3418.333158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.27909 -38.80952 -37.88109 -36.34677 -34.49009 -34.25186 -32.28243 -31.78006 -29.19611 -28.31711 -26.32514 -25.28789 -22.58389 -21.79901 -20.88472 -20.19418 -18.81753 -18.40256 -17.78566 -17.06827 -16.34630 -15.62148 -15.34644 -15.11974 -14.89108 -14.40188 -14.14390 -13.99844 -13.57550 -13.51470 -13.24328 -12.96044 -12.40470 -11.85460 -11.69233 -11.63677 -11.48493 -11.12974 -11.02857 -10.71731 -10.43040 -10.10058 -9.99571 -9.66409 -9.47583 -9.06824 -8.79961 -7.71664 -7.13179 -6.44335 -4.03905 1.24572 1.85668 2.10338 2.42147 3.11001 3.12149 3.17778 3.28331 3.76509 3.96109 4.30017 4.45015 4.57291 4.61732 4.84436 4.98953 5.11390 5.29445 5.37424 5.68050 6.02077 6.05565 6.07499 6.11476 6.21248 6.24401 6.41422 6.66974 6.75266 7.00476 7.10567 7.24223 7.35022 7.44034 7.83133 7.92014 8.00470 8.60610 9.01241 9.72179 10.73878 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.003383 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.327017 B = 8274.214094 C = 9381.729947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.150 4.150 3 C 0.058 3.942 4 O -0.122 6.122 5 N -0.617 5.617 6 C 0.719 3.281 7 O -0.550 6.550 8 N -0.672 5.672 9 C 0.200 3.800 10 C -0.204 4.204 11 C -0.062 4.062 12 C -0.200 4.200 13 C 0.169 3.831 14 O -0.176 6.176 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.256 4.256 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.123 0.877 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.403 0.597 30 H 0.404 0.596 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.269 0.731 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.416 -6.089 -6.900 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.019 4.019 4 O -0.125 6.125 5 N -0.322 5.322 6 C 0.420 3.580 7 O -0.423 6.423 8 N -0.323 5.323 9 C 0.107 3.893 10 C -0.225 4.225 11 C -0.081 4.081 12 C -0.220 4.220 13 C 0.115 3.885 14 O -0.080 6.080 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.278 4.278 24 H 0.118 0.882 25 H 0.128 0.872 26 H 0.141 0.859 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.242 0.758 30 H 0.238 0.762 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.079 0.921 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.783 -6.982 -5.998 20.917 hybrid contribution -0.388 1.089 -1.898 2.222 sum -19.171 -5.893 -7.896 21.555 Atomic orbital electron populations 1.23898 0.95291 1.02684 0.98678 1.22523 0.95561 0.97359 1.01454 1.22054 0.88984 0.97524 0.93326 1.90627 1.43072 1.17903 1.60899 1.46101 1.30920 1.09590 1.45588 1.15276 0.78618 0.83648 0.80419 1.90979 1.70124 1.36142 1.45026 1.42319 1.36008 1.17023 1.36971 1.17123 0.86719 0.98407 0.87088 1.20598 1.01806 1.07602 0.92517 1.20532 0.92621 0.96891 0.98029 1.20261 0.99988 1.05169 0.96565 1.19057 0.86205 0.90696 0.92565 1.84025 1.32223 1.60418 1.31329 1.21311 1.11556 1.30441 0.83405 0.89206 1.25274 0.95190 0.96236 0.99844 1.70049 1.12573 1.34110 1.33004 0.85661 0.78720 0.78659 0.80426 1.19235 1.20203 1.20168 1.20764 0.93871 1.10922 1.02198 0.88179 0.87233 0.85937 0.91478 0.90974 0.75752 0.76158 0.86111 0.86526 0.86329 0.92093 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 14.31 29.02 0.42 -0.54 16 2 C -0.15 -1.10 9.89 -36.02 -0.36 -1.46 16 3 C 0.06 0.46 6.64 36.01 0.24 0.70 16 4 O -0.12 -1.55 11.09 -29.62 -0.33 -1.88 16 5 N -0.62 -7.37 6.40 27.63 0.18 -7.19 16 6 C 0.72 11.67 8.44 -86.91 -0.73 10.94 16 7 O -0.55 -11.48 14.45 -12.85 -0.19 -11.67 16 8 N -0.67 -10.20 5.35 -14.24 -0.08 -10.28 16 9 C 0.20 3.85 6.27 -83.71 -0.52 3.32 16 10 C -0.20 -4.01 8.65 -39.34 -0.34 -4.35 16 11 C -0.06 -1.18 10.03 -39.63 -0.40 -1.58 16 12 C -0.20 -4.30 9.99 -39.36 -0.39 -4.70 16 13 C 0.17 4.08 6.64 -39.13 -0.26 3.82 16 14 O -0.18 -4.99 9.76 0.04 0.00 -4.99 16 15 C -0.39 -10.75 9.44 30.88 0.29 -10.46 16 16 H 0.09 2.28 5.30 -52.49 -0.28 2.00 16 17 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 18 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 19 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 23 C -0.26 -5.49 9.05 -39.21 -0.35 -5.85 16 24 H 0.10 0.46 7.90 -52.48 -0.41 0.04 16 25 H 0.11 0.49 8.06 -52.49 -0.42 0.06 16 26 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 27 H 0.07 0.42 7.86 -51.93 -0.41 0.01 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.40 3.01 8.56 -40.82 -0.35 2.66 16 30 H 0.40 4.51 8.83 -40.82 -0.36 4.15 16 31 H 0.12 2.37 6.43 -52.49 -0.34 2.03 16 32 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 35 H 0.13 2.71 5.71 -52.49 -0.30 2.41 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -35.23 315.72 -6.13 -41.36 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -3.70 Total: 8.26 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.51 Total: -9.20 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.86 Total: -41.80 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.51 Total: -18.54 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.23 -6.13 -41.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665954835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.911 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds