Wall clock time and date at job start Tue Mar 31 2020 00:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 120.00082 * 2 1 4 4 O 1.42896 * 109.47327 * 135.00086 * 3 2 1 5 5 N 1.41603 * 114.00025 * 180.02562 * 4 3 2 6 6 C 1.34783 * 119.99823 * 179.97438 * 5 4 3 7 7 O 1.21579 * 119.99932 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99448 * 179.97438 * 6 5 4 9 9 C 1.39946 * 119.99608 * 174.73691 * 8 6 5 10 10 C 1.38954 * 120.03543 * 326.33782 * 9 8 6 11 11 C 1.38166 * 120.06957 * 180.02562 * 10 9 8 12 12 C 1.38171 * 120.13394 * 359.72130 * 11 10 9 13 13 C 1.38914 * 120.06955 * 0.55549 * 12 11 10 14 14 O 1.35749 * 120.03309 * 179.72177 * 13 12 11 15 15 C 1.34834 * 117.00022 * 173.81879 * 14 13 12 16 16 H 1.07995 * 119.99824 * 354.59952 * 15 14 13 17 17 C 1.38647 * 119.99947 * 174.59880 * 15 14 13 18 18 N 1.31563 * 120.00020 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46756 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46979 * 120.00017 * 19 17 15 22 22 H 1.48495 * 109.47523 * 240.00602 * 19 17 15 23 23 C 1.38712 * 120.03423 * 146.35870 * 9 8 6 24 24 H 1.08006 * 120.00016 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00065 * 180.02562 * 1 2 3 26 26 H 1.08006 * 120.00016 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47056 * 14.99348 * 3 2 1 28 28 H 1.09004 * 109.46859 * 254.99992 * 3 2 1 29 29 H 0.96998 * 120.00175 * 359.97438 * 5 4 3 30 30 H 0.96998 * 120.00749 * 354.73789 * 8 6 5 31 31 H 1.07998 * 119.97096 * 359.97438 * 10 9 8 32 32 H 1.07996 * 119.93563 * 179.97438 * 11 10 9 33 33 H 1.07999 * 119.96385 * 180.27555 * 12 11 10 34 34 H 0.96999 * 119.99771 * 180.02562 * 18 17 15 35 35 H 1.07995 * 120.07093 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2413 0.9526 5 7 3.9005 2.4245 1.0321 6 6 4.9352 2.4964 1.8929 7 8 5.2036 1.5457 2.6015 8 7 5.6720 3.6224 1.9680 9 6 6.6753 3.7386 2.9368 10 6 6.5144 3.1392 4.1800 11 6 7.5042 3.2539 5.1372 12 6 8.6591 3.9598 4.8596 13 6 8.8233 4.5663 3.6206 14 8 9.9558 5.2644 3.3507 15 6 10.1092 5.7187 2.0905 16 1 9.3935 5.4482 1.3282 17 6 11.1855 6.5330 1.7733 18 7 12.0575 6.8621 2.7018 19 14 11.3984 7.1619 0.0272 20 1 10.2914 6.6515 -0.8210 21 1 11.3754 8.6467 0.0297 22 1 12.6969 6.6877 -0.5149 23 6 7.8311 4.4528 2.6571 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3854 2.1161 0.2659 28 1 2.4754 1.4867 -0.9927 29 1 3.6861 3.1831 0.4670 30 1 5.5071 4.3522 1.3508 31 1 5.6145 2.5836 4.3987 32 1 7.3768 2.7875 6.1028 33 1 9.4329 4.0440 5.6082 34 1 12.8103 7.4321 2.4800 35 1 7.9585 4.9195 1.6916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665954835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:58 Heat of formation + Delta-G solvation = -12.027816 kcal Electronic energy + Delta-G solvation = -20256.363274 eV Core-core repulsion = 16836.964362 eV Total energy + Delta-G solvation = -3419.398912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.66437 -40.43612 -38.93868 -37.95310 -35.72653 -35.17238 -34.21594 -32.89893 -30.83268 -29.90081 -27.29472 -26.93844 -23.98919 -23.48250 -22.12156 -21.02618 -20.12210 -19.65709 -19.37617 -18.61493 -17.21751 -16.95741 -16.75573 -16.45491 -16.32403 -15.83367 -15.60789 -15.54489 -15.29863 -14.56462 -14.25234 -14.15994 -13.92209 -13.54998 -13.28029 -12.77609 -12.73187 -12.44484 -12.35307 -12.12083 -12.06089 -11.59189 -11.31583 -11.21017 -10.71858 -10.54155 -10.06212 -9.32665 -8.84519 -8.43636 -6.12091 0.25865 0.52551 0.73285 1.28230 1.38454 1.46794 1.56544 1.95655 2.20153 2.61826 2.87019 3.20211 3.52124 3.59844 3.88559 4.06292 4.13380 4.29895 4.35905 4.46082 4.50501 4.63703 4.70319 4.93669 5.02808 5.14310 5.26336 5.45934 5.52020 5.59618 5.64360 5.69158 5.71843 5.91778 6.04724 6.20978 6.80596 7.00969 7.39466 7.80868 8.79639 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.003383 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.327017 B = 8274.214094 C = 9381.729947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.178 4.178 3 C 0.054 3.946 4 O -0.152 6.152 5 N -0.595 5.595 6 C 0.719 3.281 7 O -0.600 6.600 8 N -0.659 5.659 9 C 0.207 3.793 10 C -0.200 4.200 11 C -0.050 4.050 12 C -0.212 4.212 13 C 0.135 3.865 14 O -0.226 6.226 15 C -0.411 4.411 16 H 0.104 0.896 17 C -0.023 4.023 18 N -0.920 5.920 19 Si 1.019 2.981 20 H -0.248 1.248 21 H -0.269 1.269 22 H -0.273 1.273 23 C -0.256 4.256 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.426 0.574 30 H 0.424 0.576 31 H 0.128 0.872 32 H 0.154 0.846 33 H 0.120 0.880 34 H 0.272 0.728 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.225 -6.353 -8.630 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.197 4.197 3 C -0.022 4.022 4 O -0.156 6.156 5 N -0.300 5.300 6 C 0.420 3.580 7 O -0.477 6.477 8 N -0.312 5.312 9 C 0.113 3.887 10 C -0.221 4.221 11 C -0.069 4.069 12 C -0.232 4.232 13 C 0.084 3.916 14 O -0.132 6.132 15 C -0.487 4.487 16 H 0.121 0.879 17 C -0.221 4.221 18 N -0.558 5.558 19 Si 0.838 3.162 20 H -0.171 1.171 21 H -0.194 1.194 22 H -0.198 1.198 23 C -0.278 4.278 24 H 0.133 0.867 25 H 0.140 0.860 26 H 0.131 0.869 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.270 0.730 30 H 0.263 0.737 31 H 0.145 0.855 32 H 0.171 0.829 33 H 0.138 0.862 34 H 0.081 0.919 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.692 -7.235 -7.782 24.154 hybrid contribution 0.164 0.979 -1.290 1.628 sum -21.528 -6.256 -9.071 24.184 Atomic orbital electron populations 1.24146 0.94697 1.04006 0.95887 1.22544 0.96226 0.96916 1.04042 1.22336 0.88196 0.98484 0.93150 1.90628 1.44262 1.18069 1.62633 1.45701 1.29509 1.10398 1.44433 1.15343 0.79153 0.82949 0.80532 1.90946 1.71654 1.37837 1.47245 1.42064 1.34861 1.17707 1.36519 1.17091 0.86786 0.97002 0.87858 1.20881 1.01945 1.06645 0.92653 1.20900 0.91102 0.95428 0.99461 1.20486 1.01141 1.05593 0.96003 1.19568 0.86342 0.91350 0.94330 1.83993 1.34583 1.62598 1.32018 1.21842 1.12249 1.30683 0.83885 0.87860 1.26587 0.94485 0.96173 1.04842 1.70197 1.13808 1.35959 1.35875 0.84522 0.79143 0.78110 0.74386 1.17095 1.19383 1.19828 1.20779 0.94032 1.11181 1.01771 0.86716 0.86041 0.86916 0.89459 0.89423 0.72988 0.73701 0.85460 0.82872 0.86158 0.91894 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 14.31 67.79 0.97 -0.34 16 2 C -0.18 -2.30 9.89 25.66 0.25 -2.05 16 3 C 0.05 0.72 6.64 71.24 0.47 1.19 16 4 O -0.15 -3.58 11.09 -21.44 -0.24 -3.82 16 5 N -0.59 -12.68 6.40 -184.75 -1.18 -13.87 16 6 C 0.72 21.89 8.44 179.05 1.51 23.41 16 7 O -0.60 -24.32 14.45 13.39 0.19 -24.12 16 8 N -0.66 -18.54 5.35 -317.23 -1.70 -20.24 16 9 C 0.21 7.70 6.27 38.13 0.24 7.94 16 10 C -0.20 -7.52 8.65 22.42 0.19 -7.33 16 11 C -0.05 -1.85 10.03 22.24 0.22 -1.62 16 12 C -0.21 -9.20 9.99 22.42 0.22 -8.98 16 13 C 0.14 6.69 6.64 22.56 0.15 6.84 16 14 O -0.23 -13.32 9.76 -22.77 -0.22 -13.54 16 15 C -0.41 -23.20 9.44 67.92 0.64 -22.56 16 16 H 0.10 5.28 5.30 -2.91 -0.02 5.26 16 17 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 18 N -0.92 -55.68 13.67 21.61 0.30 -55.38 16 19 Si 1.02 41.55 29.55 68.60 2.03 43.57 16 20 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 21 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 C -0.26 -10.92 9.05 22.51 0.20 -10.72 16 24 H 0.11 0.66 7.90 -2.91 -0.02 0.63 16 25 H 0.12 0.75 8.06 -2.91 -0.02 0.73 16 26 H 0.11 1.63 8.06 -2.91 -0.02 1.61 16 27 H 0.09 0.79 7.86 -2.39 -0.02 0.77 16 28 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.43 4.92 8.56 -92.71 -0.79 4.13 16 30 H 0.42 8.28 8.83 -92.71 -0.82 7.46 16 31 H 0.13 4.73 6.43 -2.91 -0.02 4.71 16 32 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.13 5.50 5.71 -2.91 -0.02 5.49 16 Total: -1.00 -79.72 315.72 4.26 -75.46 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -0.47 Total: 26.99 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 5.55 Total: -15.06 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -2.58 Total: -89.49 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.27 Total: -41.49 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -79.72 4.26 -75.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665954835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.434 kcal (2) G-P(sol) polarization free energy of solvation -79.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds