Wall clock time and date at job start Tue Mar 31 2020 00:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30988 * 1 3 3 C 1.50700 * 120.00156 * 2 1 4 4 O 1.42905 * 109.47555 * 135.00171 * 3 2 1 5 5 N 1.41597 * 114.00369 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99842 * 180.02562 * 5 4 3 7 7 O 1.21590 * 119.99941 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99829 * 179.97438 * 6 5 4 9 9 C 1.40026 * 119.99741 * 175.48932 * 8 6 5 10 10 C 1.38910 * 119.99746 * 215.12163 * 9 8 6 11 11 C 1.38013 * 119.99456 * 180.02562 * 10 9 8 12 12 C 1.38905 * 120.00173 * 0.02695 * 11 10 9 13 13 O 1.35785 * 119.99526 * 179.97438 * 12 11 10 14 14 C 1.34808 * 117.00368 * 5.34045 * 13 12 11 15 15 H 1.07999 * 120.00102 * 354.96403 * 14 13 12 16 16 C 1.38630 * 120.00359 * 174.96668 * 14 13 12 17 17 N 1.31578 * 119.99402 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00263 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46786 * 60.00240 * 18 16 14 20 20 H 1.48503 * 109.47051 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47164 * 300.00001 * 18 16 14 22 22 C 1.38895 * 120.00188 * 0.23072 * 12 11 10 23 23 C 1.38011 * 120.00118 * 359.48580 * 22 12 11 24 24 H 1.08005 * 120.00089 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.00230 * 180.02562 * 1 2 3 26 26 H 1.08005 * 120.00089 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47036 * 15.00468 * 3 2 1 28 28 H 1.08999 * 109.47265 * 255.00035 * 3 2 1 29 29 H 0.96994 * 120.00010 * 359.97438 * 5 4 3 30 30 H 0.97000 * 119.99478 * 355.49187 * 8 6 5 31 31 H 1.07994 * 120.00481 * 0.02562 * 10 9 8 32 32 H 1.07999 * 119.99364 * 180.02562 * 11 10 9 33 33 H 0.97002 * 119.99445 * 180.02562 * 17 16 14 34 34 H 1.08005 * 119.99828 * 179.72421 * 22 12 11 35 35 H 1.08004 * 120.00333 * 180.23111 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 7 3.9006 2.4244 1.0321 6 6 4.9359 2.4960 1.8922 7 8 5.2049 1.5448 2.6001 8 7 5.6728 3.6219 1.9674 9 6 6.6878 3.7315 2.9258 10 6 6.9473 4.9573 3.5255 11 6 7.9481 5.0654 4.4697 12 6 8.6962 3.9486 4.8198 13 8 9.6811 4.0552 5.7484 14 6 9.8087 5.2437 6.3718 15 1 9.1984 6.0812 6.0677 16 6 10.7233 5.3909 7.4031 17 7 11.4665 4.3704 7.7739 18 14 10.9005 7.0379 8.2664 19 1 9.6027 7.4168 8.8809 20 1 11.9369 6.9331 9.3248 21 1 11.3022 8.0730 7.2802 22 6 8.4403 2.7241 4.2162 23 6 7.4357 2.6146 3.2763 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3855 2.1160 0.2661 28 1 2.4754 1.4868 -0.9926 29 1 3.6862 3.1831 0.4671 30 1 5.5000 4.3563 1.3577 31 1 6.3660 5.8257 3.2530 32 1 8.1496 6.0183 4.9363 33 1 12.1061 4.4733 8.4958 34 1 9.0250 1.8568 4.4853 35 1 7.2342 1.6617 2.8097 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667295284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:04 Heat of formation + Delta-G solvation = 14.750660 kcal Electronic energy + Delta-G solvation = -20039.868889 eV Core-core repulsion = 16621.631178 eV Total energy + Delta-G solvation = -3418.237711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.21807 -38.79924 -37.89264 -36.37894 -34.48441 -34.01113 -32.25136 -31.56819 -30.17520 -27.67363 -26.28756 -25.27045 -22.39571 -21.94046 -20.86647 -20.26338 -18.80834 -18.27290 -17.80803 -17.07377 -16.36109 -16.03172 -15.56049 -14.94827 -14.54954 -14.53384 -14.11237 -13.66966 -13.54387 -13.39176 -13.23418 -12.78762 -12.51466 -11.89024 -11.75145 -11.57981 -11.53414 -11.41932 -10.99452 -10.72860 -10.46608 -10.01091 -9.95088 -9.63945 -9.22110 -9.05637 -8.67224 -8.16430 -6.90215 -6.41093 -3.99314 1.26314 1.86907 2.20500 2.30221 3.14655 3.15695 3.19248 3.30841 3.81862 3.99782 4.30783 4.44788 4.57186 4.61142 4.82885 4.98583 5.12698 5.37090 5.38138 5.57406 5.80335 6.05557 6.10422 6.11997 6.22627 6.25829 6.49591 6.72072 6.87165 6.92874 7.13044 7.23636 7.26871 7.46439 7.82413 7.96833 8.03267 8.66353 9.04008 9.74974 10.76816 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.053343 B = 0.002663 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.783538 B =10513.495394 C =10719.681429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.150 4.150 3 C 0.059 3.941 4 O -0.122 6.122 5 N -0.618 5.618 6 C 0.715 3.285 7 O -0.555 6.555 8 N -0.665 5.665 9 C 0.053 3.947 10 C -0.089 4.089 11 C -0.220 4.220 12 C 0.147 3.853 13 O -0.176 6.176 14 C -0.392 4.392 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.178 4.178 23 C -0.066 4.066 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.123 0.877 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.401 0.599 30 H 0.399 0.601 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.270 0.730 34 H 0.121 0.879 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.683 -0.349 -16.424 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.018 4.018 4 O -0.126 6.126 5 N -0.324 5.324 6 C 0.416 3.584 7 O -0.428 6.428 8 N -0.316 5.316 9 C -0.039 4.039 10 C -0.110 4.110 11 C -0.240 4.240 12 C 0.093 3.907 13 O -0.080 6.080 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.497 5.497 18 Si 0.766 3.234 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.198 4.198 23 C -0.086 4.086 24 H 0.118 0.882 25 H 0.128 0.872 26 H 0.141 0.859 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.240 0.760 30 H 0.233 0.767 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.079 -1.653 -15.384 23.045 hybrid contribution -0.495 1.677 -0.426 1.799 sum -17.573 0.024 -15.810 23.639 Atomic orbital electron populations 1.23898 0.95306 1.02681 0.98660 1.22524 0.95568 0.97377 1.01463 1.22040 0.89029 0.97507 0.93253 1.90638 1.43074 1.17968 1.60871 1.46123 1.31054 1.09481 1.45709 1.15384 0.78520 0.84231 0.80230 1.90961 1.70456 1.36307 1.45109 1.42028 1.35153 1.16953 1.37488 1.16987 0.93542 0.95439 0.97974 1.20437 0.98626 0.95454 0.96451 1.20949 1.00496 0.99694 1.02859 1.19426 0.88201 0.93092 0.89982 1.83993 1.43173 1.35662 1.45150 1.21259 1.23056 0.86963 1.15517 0.89129 1.25289 0.95672 0.99361 0.96274 1.70044 1.21803 1.30235 1.27624 0.85784 0.78480 0.80216 0.78941 1.19539 1.20331 1.19547 1.20156 1.01744 0.96113 1.01738 1.20801 0.92790 0.97944 0.97086 0.88199 0.87232 0.85937 0.91550 0.91073 0.75958 0.76710 0.87120 0.85059 0.91993 0.86054 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 14.31 29.02 0.42 -0.53 16 2 C -0.15 -1.09 9.89 -36.02 -0.36 -1.44 16 3 C 0.06 0.44 6.64 36.01 0.24 0.68 16 4 O -0.12 -1.53 11.09 -29.62 -0.33 -1.86 16 5 N -0.62 -7.04 6.39 27.64 0.18 -6.86 16 6 C 0.72 11.16 8.55 -86.91 -0.74 10.42 16 7 O -0.55 -11.49 14.19 -12.86 -0.18 -11.68 16 8 N -0.66 -9.15 5.35 -14.18 -0.08 -9.22 16 9 C 0.05 0.95 6.30 -83.62 -0.53 0.42 16 10 C -0.09 -1.59 9.96 -39.41 -0.39 -1.98 16 11 C -0.22 -4.71 9.16 -39.42 -0.36 -5.07 16 12 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 13 O -0.18 -5.08 9.75 0.00 0.00 -5.08 16 14 C -0.39 -10.94 9.48 30.88 0.29 -10.65 16 15 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 17 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 18 Si 0.94 20.51 29.55 -169.99 -5.02 15.48 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 22 C -0.18 -3.98 9.98 -39.42 -0.39 -4.38 16 23 C -0.07 -1.34 8.69 -39.42 -0.34 -1.68 16 24 H 0.10 0.45 7.90 -52.48 -0.41 0.04 16 25 H 0.11 0.48 8.06 -52.49 -0.42 0.06 16 26 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 27 H 0.07 0.40 7.86 -51.93 -0.41 -0.01 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.40 2.68 8.56 -40.82 -0.35 2.33 16 30 H 0.40 3.66 8.84 -40.82 -0.36 3.30 16 31 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.13 2.76 5.63 -52.49 -0.30 2.46 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 35 H 0.13 2.67 6.22 -52.48 -0.33 2.35 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -35.68 315.32 -6.12 -41.81 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -3.68 Total: 7.27 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.53 Total: -9.90 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.86 Total: -40.80 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.51 Total: -18.62 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.68 -6.12 -41.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667295284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.559 kcal (2) G-P(sol) polarization free energy of solvation -35.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds