Wall clock time and date at job start Tue Mar 31 2020 00:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30988 * 1 3 3 C 1.50700 * 120.00156 * 2 1 4 4 O 1.42905 * 109.47555 * 135.00171 * 3 2 1 5 5 N 1.41597 * 114.00369 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99842 * 180.02562 * 5 4 3 7 7 O 1.21590 * 119.99941 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99829 * 179.97438 * 6 5 4 9 9 C 1.40026 * 119.99741 * 175.48932 * 8 6 5 10 10 C 1.38910 * 119.99746 * 215.12163 * 9 8 6 11 11 C 1.38013 * 119.99456 * 180.02562 * 10 9 8 12 12 C 1.38905 * 120.00173 * 0.02695 * 11 10 9 13 13 O 1.35785 * 119.99526 * 179.97438 * 12 11 10 14 14 C 1.34808 * 117.00368 * 5.34045 * 13 12 11 15 15 H 1.07999 * 120.00102 * 354.96403 * 14 13 12 16 16 C 1.38630 * 120.00359 * 174.96668 * 14 13 12 17 17 N 1.31578 * 119.99402 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00263 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46786 * 60.00240 * 18 16 14 20 20 H 1.48503 * 109.47051 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47164 * 300.00001 * 18 16 14 22 22 C 1.38895 * 120.00188 * 0.23072 * 12 11 10 23 23 C 1.38011 * 120.00118 * 359.48580 * 22 12 11 24 24 H 1.08005 * 120.00089 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.00230 * 180.02562 * 1 2 3 26 26 H 1.08005 * 120.00089 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47036 * 15.00468 * 3 2 1 28 28 H 1.08999 * 109.47265 * 255.00035 * 3 2 1 29 29 H 0.96994 * 120.00010 * 359.97438 * 5 4 3 30 30 H 0.97000 * 119.99478 * 355.49187 * 8 6 5 31 31 H 1.07994 * 120.00481 * 0.02562 * 10 9 8 32 32 H 1.07999 * 119.99364 * 180.02562 * 11 10 9 33 33 H 0.97002 * 119.99445 * 180.02562 * 17 16 14 34 34 H 1.08005 * 119.99828 * 179.72421 * 22 12 11 35 35 H 1.08004 * 120.00333 * 180.23111 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 7 3.9006 2.4244 1.0321 6 6 4.9359 2.4960 1.8922 7 8 5.2049 1.5448 2.6001 8 7 5.6728 3.6219 1.9674 9 6 6.6878 3.7315 2.9258 10 6 6.9473 4.9573 3.5255 11 6 7.9481 5.0654 4.4697 12 6 8.6962 3.9486 4.8198 13 8 9.6811 4.0552 5.7484 14 6 9.8087 5.2437 6.3718 15 1 9.1984 6.0812 6.0677 16 6 10.7233 5.3909 7.4031 17 7 11.4665 4.3704 7.7739 18 14 10.9005 7.0379 8.2664 19 1 9.6027 7.4168 8.8809 20 1 11.9369 6.9331 9.3248 21 1 11.3022 8.0730 7.2802 22 6 8.4403 2.7241 4.2162 23 6 7.4357 2.6146 3.2763 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3855 2.1160 0.2661 28 1 2.4754 1.4868 -0.9926 29 1 3.6862 3.1831 0.4671 30 1 5.5000 4.3563 1.3577 31 1 6.3660 5.8257 3.2530 32 1 8.1496 6.0183 4.9363 33 1 12.1061 4.4733 8.4958 34 1 9.0250 1.8568 4.4853 35 1 7.2342 1.6617 2.8097 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667295284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:03 Heat of formation + Delta-G solvation = -10.853416 kcal Electronic energy + Delta-G solvation = -20040.979165 eV Core-core repulsion = 16621.631178 eV Total energy + Delta-G solvation = -3419.347987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57393 -40.43565 -38.93454 -37.94872 -35.51318 -35.11956 -34.15983 -32.68108 -31.83688 -29.22156 -27.32006 -26.85399 -23.98168 -23.41838 -22.17221 -21.01800 -20.08668 -19.49338 -19.33034 -18.79979 -17.52858 -17.12877 -16.55690 -16.33159 -16.03432 -16.00302 -15.45895 -15.38391 -15.11247 -14.52757 -14.24365 -14.09867 -13.90751 -13.57188 -13.26925 -13.19514 -12.66633 -12.46303 -12.38533 -12.14083 -12.09522 -11.41178 -11.36040 -10.96219 -10.57265 -10.50019 -9.99300 -9.81024 -8.58341 -8.42053 -6.09547 0.33123 0.56506 0.66409 1.30063 1.39060 1.49980 1.55779 2.01892 2.22018 2.73044 2.86581 3.19243 3.55722 3.65346 3.89970 4.07912 4.09059 4.17614 4.31951 4.50913 4.53755 4.59790 4.76851 4.94425 5.07412 5.23896 5.30229 5.38831 5.54667 5.59537 5.62161 5.67519 5.70746 5.96634 6.06421 6.20406 6.93733 7.01953 7.50073 7.83399 8.81056 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.053343 B = 0.002663 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.783538 B =10513.495394 C =10719.681429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.178 4.178 3 C 0.056 3.944 4 O -0.156 6.156 5 N -0.595 5.595 6 C 0.713 3.287 7 O -0.611 6.611 8 N -0.647 5.647 9 C 0.081 3.919 10 C -0.073 4.073 11 C -0.220 4.220 12 C 0.108 3.892 13 O -0.232 6.232 14 C -0.412 4.412 15 H 0.109 0.891 16 C -0.028 4.028 17 N -0.924 5.924 18 Si 1.022 2.978 19 H -0.257 1.257 20 H -0.276 1.276 21 H -0.254 1.254 22 C -0.191 4.191 23 C -0.074 4.074 24 H 0.115 0.885 25 H 0.120 0.880 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.427 0.573 30 H 0.427 0.573 31 H 0.165 0.835 32 H 0.136 0.864 33 H 0.271 0.729 34 H 0.110 0.890 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.880 2.226 -18.572 28.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.198 4.198 3 C -0.020 4.020 4 O -0.160 6.160 5 N -0.301 5.301 6 C 0.414 3.586 7 O -0.489 6.489 8 N -0.300 5.300 9 C -0.013 4.013 10 C -0.093 4.093 11 C -0.239 4.239 12 C 0.057 3.943 13 O -0.139 6.139 14 C -0.488 4.488 15 H 0.126 0.874 16 C -0.225 4.225 17 N -0.562 5.562 18 Si 0.841 3.159 19 H -0.181 1.181 20 H -0.201 1.201 21 H -0.178 1.178 22 C -0.211 4.211 23 C -0.094 4.094 24 H 0.133 0.867 25 H 0.138 0.862 26 H 0.130 0.870 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.271 0.729 30 H 0.266 0.734 31 H 0.182 0.818 32 H 0.153 0.847 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.373 0.967 -17.661 26.980 hybrid contribution 0.149 0.718 -0.088 0.739 sum -20.224 1.686 -17.749 26.960 Atomic orbital electron populations 1.24140 0.94748 1.03971 0.96018 1.22562 0.96241 0.97058 1.03926 1.22313 0.88220 0.98289 0.93209 1.90640 1.44336 1.18396 1.62658 1.45692 1.29618 1.10228 1.44536 1.15519 0.79164 0.83625 0.80268 1.90944 1.72098 1.38328 1.47506 1.41712 1.33736 1.17601 1.36987 1.17060 0.92689 0.94575 0.96982 1.20813 0.97266 0.96977 0.94279 1.21135 1.00649 0.98700 1.03437 1.19874 0.89102 0.94879 0.90418 1.83962 1.45843 1.36602 1.47449 1.21853 1.23573 0.87459 1.15923 0.87417 1.26663 0.95017 1.03892 0.96891 1.70213 1.23580 1.33271 1.29120 0.84607 0.78877 0.74780 0.77680 1.18111 1.20106 1.17760 1.20241 1.02630 0.95577 1.02628 1.20871 0.92632 0.99076 0.96823 0.86670 0.86184 0.87030 0.89534 0.89205 0.72928 0.73358 0.81779 0.84685 0.91969 0.87194 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 14.31 67.79 0.97 -0.35 16 2 C -0.18 -2.28 9.89 25.66 0.25 -2.02 16 3 C 0.06 0.69 6.64 71.24 0.47 1.16 16 4 O -0.16 -3.59 11.09 -21.43 -0.24 -3.83 16 5 N -0.59 -11.64 6.39 -184.74 -1.18 -12.82 16 6 C 0.71 20.43 8.55 179.05 1.53 21.96 16 7 O -0.61 -24.85 14.19 13.35 0.19 -24.66 16 8 N -0.65 -15.26 5.35 -317.04 -1.69 -16.96 16 9 C 0.08 2.68 6.30 38.15 0.24 2.92 16 10 C -0.07 -2.34 9.96 22.38 0.22 -2.11 16 11 C -0.22 -9.16 9.16 22.38 0.20 -8.95 16 12 C 0.11 5.48 6.65 22.59 0.15 5.63 16 13 O -0.23 -14.14 9.75 -22.91 -0.22 -14.36 16 14 C -0.41 -23.82 9.48 67.91 0.64 -23.18 16 15 H 0.11 5.54 5.20 -2.91 -0.02 5.52 16 16 C -0.03 -1.57 5.49 84.82 0.47 -1.10 16 17 N -0.92 -57.44 13.67 21.61 0.30 -57.15 16 18 Si 1.02 42.53 29.55 68.60 2.03 44.56 16 19 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 20 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 22 C -0.19 -8.94 9.98 22.37 0.22 -8.71 16 23 C -0.07 -2.99 8.69 22.38 0.19 -2.79 16 24 H 0.12 0.64 7.90 -2.91 -0.02 0.61 16 25 H 0.12 0.77 8.06 -2.91 -0.02 0.75 16 26 H 0.11 1.61 8.06 -2.91 -0.02 1.59 16 27 H 0.09 0.71 7.86 -2.39 -0.02 0.69 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.43 3.79 8.56 -92.71 -0.79 3.00 16 30 H 0.43 5.48 8.84 -92.71 -0.82 4.66 16 31 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.14 5.49 5.63 -2.91 -0.02 5.48 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.11 5.21 8.06 -2.91 -0.02 5.19 16 35 H 0.13 5.34 6.22 -2.91 -0.02 5.32 16 Total: -1.00 -84.06 315.32 4.28 -79.77 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.47 Total: 22.99 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 5.57 Total: -17.55 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -2.58 Total: -86.92 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.27 Total: -42.86 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -84.06 4.28 -79.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667295284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.920 kcal (2) G-P(sol) polarization free energy of solvation -84.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds