Wall clock time and date at job start Tue Mar 31 2020 00:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35726 * 117.00433 * 2 1 4 4 C 1.39083 * 119.89455 * 0.02562 * 3 2 1 5 5 C 1.37591 * 120.17806 * 179.97438 * 4 3 2 6 6 C 1.40343 * 119.96488 * 0.02562 * 5 4 3 7 7 C 1.46691 * 120.10445 * 179.97438 * 6 5 4 8 8 N 1.30733 * 119.99995 * 359.97438 * 7 6 5 9 9 N 1.40101 * 120.00355 * 179.97438 * 8 7 6 10 10 C 1.34780 * 120.00159 * 180.02562 * 9 8 7 11 11 O 1.21992 * 119.99754 * 0.02562 * 10 9 8 12 12 C 1.40586 * 120.00047 * 180.02562 * 10 9 8 13 13 H 1.08003 * 119.99637 * 353.72450 * 12 10 9 14 14 C 1.40193 * 119.99956 * 173.71861 * 12 10 9 15 15 N 1.30606 * 119.99868 * 6.28060 * 14 12 10 16 16 Si 1.86797 * 120.00038 * 186.28543 * 14 12 10 17 17 H 1.48498 * 109.47267 * 94.97925 * 16 14 12 18 18 H 1.48494 * 109.47345 * 214.98430 * 16 14 12 19 19 H 1.48511 * 109.46929 * 334.98351 * 16 14 12 20 20 C 1.40218 * 119.79423 * 359.73216 * 6 5 4 21 21 C 1.37935 * 119.82079 * 0.51485 * 20 6 5 22 22 O 1.35962 * 119.98147 * 179.75399 * 21 20 6 23 23 C 1.42897 * 117.00189 * 359.72940 * 22 21 20 24 24 H 1.09000 * 109.47032 * 299.99794 * 1 2 3 25 25 H 1.09006 * 109.46759 * 59.99491 * 1 2 3 26 26 H 1.08998 * 109.47650 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.91264 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.01886 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.00731 * 180.02562 * 7 6 5 30 30 H 0.96998 * 119.99727 * 0.02562 * 9 8 7 31 31 H 0.97003 * 119.99996 * 180.02562 * 15 14 12 32 32 H 1.08005 * 120.08712 * 180.29245 * 20 6 5 33 33 H 1.08997 * 109.47598 * 179.97438 * 23 22 21 34 34 H 1.09000 * 109.47279 * 59.99977 * 23 22 21 35 35 H 1.08994 * 109.47299 * 300.00032 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.2858 2.3744 0.0005 5 6 1.9044 3.6034 0.0011 6 6 3.3056 3.6828 0.0005 7 6 3.9684 4.9914 0.0005 8 7 3.2537 6.0861 0.0005 9 7 3.8866 7.3360 0.0011 10 6 3.1498 8.4645 0.0016 11 8 1.9317 8.3976 0.0021 12 6 3.7849 9.7188 0.0016 13 1 4.8583 9.7804 0.1034 14 6 3.0249 10.8893 -0.1307 15 7 1.7204 10.8245 -0.1306 16 14 3.8779 12.5418 -0.3073 17 1 4.0031 12.8828 -1.7471 18 1 3.0793 13.5872 0.3814 19 1 5.2296 12.4688 0.3035 20 6 4.0701 2.5073 0.0051 21 6 3.4409 1.2799 -0.0006 22 8 4.1790 0.1380 -0.0012 23 6 5.6004 0.2844 -0.0018 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2074 2.3143 0.0005 28 1 1.3121 4.5065 0.0019 29 1 5.0467 5.0507 -0.0003 30 1 4.8551 7.3892 0.0011 31 1 1.1945 11.6344 -0.2225 32 1 5.1487 2.5630 0.0095 33 1 6.0672 -0.7006 -0.0018 34 1 5.9096 0.8324 0.8882 35 1 5.9089 0.8329 -0.8917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000143669.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:33 Heat of formation + Delta-G solvation = -40.840326 kcal Electronic energy + Delta-G solvation = -20222.405428 eV Core-core repulsion = 16801.757111 eV Total energy + Delta-G solvation = -3420.648317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43644 -38.46747 -37.77017 -36.94408 -34.91218 -32.68220 -31.46457 -30.33528 -29.40702 -27.34469 -27.30049 -26.26412 -23.35860 -22.02301 -20.74977 -19.75509 -18.43885 -17.65500 -16.87323 -16.76417 -16.08203 -15.62912 -15.49171 -15.29043 -14.71840 -14.55986 -14.42312 -13.86057 -13.34309 -13.06006 -12.70484 -12.68323 -12.16943 -12.13946 -11.65911 -11.47933 -11.29518 -11.24257 -11.15591 -11.06490 -10.68104 -10.48887 -10.39189 -9.53724 -9.05610 -8.73606 -8.08270 -7.79628 -7.10540 -6.43905 -4.97916 1.08543 1.49642 2.83119 3.03732 3.09077 3.13323 3.22892 3.26594 3.68647 4.00142 4.06366 4.42148 4.80233 4.91941 4.97660 5.07790 5.10111 5.12120 5.22013 5.33948 5.39934 5.41632 5.46581 5.66557 5.72145 5.91623 6.13706 6.39179 6.60517 6.75882 6.84133 7.04018 7.18294 7.59099 7.80605 7.96097 8.63680 8.73482 9.26029 10.35761 10.60845 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032973 B = 0.003086 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.981695 B = 9071.948604 C = 9895.704189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.093 3.907 4 C -0.172 4.172 5 C -0.085 4.085 6 C -0.016 4.016 7 C 0.016 3.984 8 N -0.184 5.184 9 N -0.587 5.587 10 C 0.557 3.443 11 O -0.554 6.554 12 C -0.537 4.537 13 H 0.071 0.929 14 C 0.088 3.912 15 N -0.743 5.743 16 Si 0.917 3.083 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.262 1.262 20 C -0.161 4.161 21 C 0.094 3.906 22 O -0.310 6.310 23 C 0.026 3.974 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.135 0.865 28 H 0.142 0.858 29 H 0.106 0.894 30 H 0.369 0.631 31 H 0.275 0.725 32 H 0.136 0.864 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 -17.843 -0.057 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.047 3.953 4 C -0.191 4.191 5 C -0.105 4.105 6 C -0.019 4.019 7 C -0.192 4.192 8 N 0.005 4.995 9 N -0.333 5.333 10 C 0.366 3.634 11 O -0.433 6.433 12 C -0.574 4.574 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.370 5.370 16 Si 0.741 3.259 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.186 1.186 20 C -0.182 4.182 21 C 0.049 3.951 22 O -0.224 6.224 23 C -0.069 4.069 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.153 0.847 28 H 0.160 0.840 29 H 0.123 0.877 30 H 0.205 0.795 31 H 0.086 0.914 32 H 0.154 0.846 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.794 -17.567 -0.059 17.788 hybrid contribution 1.869 0.988 -0.098 2.116 sum 4.663 -16.579 -0.157 17.223 Atomic orbital electron populations 1.23050 0.78768 1.03633 1.01433 1.86061 1.20857 1.26278 1.89086 1.18468 0.88993 0.85026 1.02833 1.21037 0.99909 0.91263 1.06882 1.21317 0.93880 0.97643 0.97690 1.18205 0.92592 0.90344 1.00724 1.23828 0.96380 0.90764 1.08253 1.74820 1.28554 0.92219 1.03861 1.48116 1.08040 1.01226 1.75940 1.16784 0.87161 0.81050 0.78387 1.90727 1.13368 1.85360 1.53864 1.19726 0.95128 0.89646 1.52854 0.91029 1.25769 0.94512 1.00780 0.92510 1.70018 1.05808 1.29761 1.31460 0.86193 0.80032 0.80555 0.79100 1.19469 1.20099 1.18606 1.21045 0.99958 0.90144 1.07053 1.17959 0.88043 0.85702 1.03398 1.86133 1.18507 1.28255 1.89484 1.23034 0.78961 1.03554 1.01342 0.92660 0.92668 0.88498 0.84700 0.83998 0.87683 0.79530 0.91440 0.84584 0.88510 0.92719 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.11 10.26 -33.44 -0.34 -4.45 16 3 C 0.09 1.33 6.72 -38.71 -0.26 1.07 16 4 C -0.17 -2.39 9.01 -39.50 -0.36 -2.75 16 5 C -0.08 -1.37 9.58 -39.03 -0.37 -1.74 16 6 C -0.02 -0.26 5.88 -104.95 -0.62 -0.87 16 7 C 0.02 0.29 10.75 -14.61 -0.16 0.13 16 8 N -0.18 -4.12 10.18 32.12 0.33 -3.80 16 9 N -0.59 -13.99 6.26 28.90 0.18 -13.81 16 10 C 0.56 16.15 7.64 -15.37 -0.12 16.03 16 11 O -0.55 -18.40 15.22 4.93 0.07 -18.33 16 12 C -0.54 -14.76 9.25 -37.96 -0.35 -15.11 16 13 H 0.07 1.76 7.86 -52.48 -0.41 1.35 16 14 C 0.09 2.37 5.49 -17.34 -0.10 2.28 16 15 N -0.74 -21.62 11.73 55.56 0.65 -20.97 16 16 Si 0.92 19.19 29.56 -169.99 -5.03 14.17 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 20 C -0.16 -2.14 8.78 -38.95 -0.34 -2.48 16 21 C 0.09 1.32 6.70 -39.13 -0.26 1.06 16 22 O -0.31 -4.03 10.28 -34.18 -0.35 -4.38 16 23 C 0.03 0.22 9.81 101.05 0.99 1.21 16 24 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 25 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.14 1.54 6.27 -52.48 -0.33 1.21 16 28 H 0.14 2.55 7.54 -52.48 -0.40 2.16 16 29 H 0.11 1.50 8.03 -52.49 -0.42 1.08 16 30 H 0.37 7.35 8.61 -182.60 -1.57 5.78 16 31 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 32 H 0.14 1.43 6.28 -52.48 -0.33 1.10 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.41 7.64 -51.93 -0.40 0.01 16 35 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -36.30 314.03 -5.73 -42.04 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.03 Total: 4.76 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.95 Total: 0.04 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 1.16 Total: -38.58 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.62 Total: -27.16 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.30 -5.73 -42.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000143669.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.197 kcal (2) G-P(sol) polarization free energy of solvation -36.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds