Wall clock time and date at job start Tue Mar 31 2020 00:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36005 * 116.99699 * 2 1 4 4 C 1.38584 * 119.98576 * 0.23333 * 3 2 1 5 5 C 1.38676 * 120.41633 * 180.27696 * 4 3 2 6 6 C 1.37655 * 120.38807 * 359.74633 * 5 4 3 7 7 C 1.40183 * 119.95889 * 359.97438 * 6 5 4 8 8 C 1.46737 * 120.20659 * 179.97438 * 7 6 5 9 9 N 1.30679 * 120.00026 * 180.02562 * 8 7 6 10 10 N 1.40104 * 119.99926 * 179.97438 * 9 8 7 11 11 C 1.34770 * 120.00184 * 179.97438 * 10 9 8 12 12 O 1.21972 * 120.00064 * 0.02562 * 11 10 9 13 13 C 1.40749 * 120.00607 * 180.02562 * 11 10 9 14 14 H 1.08005 * 119.99253 * 359.97438 * 13 11 10 15 15 C 1.40212 * 120.00536 * 180.02562 * 13 11 10 16 16 N 1.30595 * 119.99901 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00073 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46910 * 60.00122 * 17 15 13 19 19 H 1.48495 * 109.47138 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47429 * 300.00314 * 17 15 13 21 21 C 1.38976 * 119.98285 * 180.02562 * 3 2 1 22 22 O 1.35774 * 120.19071 * 0.02562 * 21 3 2 23 23 C 1.42899 * 116.99792 * 269.72356 * 22 21 3 24 24 H 1.08999 * 109.46784 * 299.99934 * 1 2 3 25 25 H 1.08997 * 109.46988 * 59.99771 * 1 2 3 26 26 H 1.08998 * 109.47127 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.79736 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.80364 * 179.76788 * 5 4 3 29 29 H 1.08004 * 120.01974 * 179.97438 * 6 5 4 30 30 H 1.08000 * 120.00024 * 0.02839 * 8 7 6 31 31 H 0.97003 * 119.99928 * 0.02562 * 10 9 8 32 32 H 0.97002 * 120.00046 * 179.97438 * 16 15 13 33 33 H 1.08997 * 109.47303 * 180.02562 * 23 22 21 34 34 H 1.09003 * 109.47072 * 300.00140 * 23 22 21 35 35 H 1.09000 * 109.47117 * 59.99666 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2913 2.3739 0.0049 5 6 1.9115 3.6142 -0.0009 6 6 3.2850 3.7060 -0.0062 7 6 4.0645 2.5408 -0.0054 8 6 5.5290 2.6323 -0.0116 9 7 6.2517 1.5436 -0.0113 10 7 7.6500 1.6309 -0.0178 11 6 8.3953 0.5081 -0.0170 12 8 7.8526 -0.5842 -0.0110 13 6 9.8001 0.5958 -0.0230 14 1 10.2806 1.5630 -0.0287 15 6 10.5755 -0.5724 -0.0226 16 7 9.9944 -1.7419 -0.0172 17 14 12.4399 -0.4559 -0.0313 18 1 12.8956 0.2776 1.1768 19 1 13.0212 -1.8223 -0.0288 20 1 12.8849 0.2698 -1.2481 21 6 3.4343 1.2842 -0.0005 22 8 4.1773 0.1478 -0.0016 23 6 4.5380 -0.3926 1.2712 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2131 2.3132 0.0091 28 1 1.3133 4.5135 -0.0008 29 1 3.7618 4.6751 -0.0111 30 1 6.0096 3.5995 -0.0165 31 1 8.0816 2.4996 -0.0222 32 1 10.5308 -2.5501 -0.0174 33 1 5.1291 -1.2971 1.1276 34 1 5.1251 0.3407 1.8241 35 1 3.6353 -0.6333 1.8327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000143704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:37 Heat of formation + Delta-G solvation = -31.048218 kcal Electronic energy + Delta-G solvation = -21148.113628 eV Core-core repulsion = 17727.889929 eV Total energy + Delta-G solvation = -3420.223699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22520 -38.05602 -37.41476 -36.55871 -35.00944 -32.64917 -31.56269 -29.89646 -29.24539 -27.31701 -26.58656 -26.02298 -23.30942 -22.03895 -20.61283 -19.69153 -18.08325 -17.31609 -16.92125 -16.63212 -15.80973 -15.52996 -15.39959 -14.78649 -14.49908 -14.26930 -14.09362 -13.66687 -13.26497 -12.97970 -12.61177 -12.38690 -12.25687 -11.74590 -11.48146 -11.45929 -11.36856 -11.11596 -10.76017 -10.64905 -10.62205 -10.39881 -9.51553 -9.16736 -9.07224 -8.74546 -7.99174 -7.71863 -7.24386 -6.37566 -4.92980 1.03859 1.47970 2.88219 3.08492 3.11704 3.14039 3.29247 3.73082 3.85084 4.10520 4.39705 4.48087 4.83188 5.01263 5.07781 5.10983 5.29395 5.30289 5.41009 5.46397 5.79087 5.81759 5.90452 6.02207 6.14141 6.20115 6.42940 6.46258 6.56970 6.77307 6.81676 7.22135 7.34441 7.85202 7.99963 8.18834 8.70718 8.78188 9.31607 10.41117 10.67547 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034407 B = 0.003956 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.580837 B = 7075.403119 C = 7794.050298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.305 6.305 3 C 0.104 3.896 4 C -0.206 4.206 5 C -0.092 4.092 6 C -0.133 4.133 7 C -0.003 4.003 8 C -0.003 4.003 9 N -0.150 5.150 10 N -0.588 5.588 11 C 0.557 3.443 12 O -0.546 6.546 13 C -0.537 4.537 14 H 0.069 0.931 15 C 0.089 3.911 16 N -0.744 5.744 17 Si 0.916 3.084 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.266 1.266 21 C 0.089 3.911 22 O -0.298 6.298 23 C 0.063 3.937 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.367 0.633 32 H 0.275 0.725 33 H 0.097 0.903 34 H 0.040 0.960 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.857 9.303 1.852 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.218 6.218 3 C 0.058 3.942 4 C -0.226 4.226 5 C -0.110 4.110 6 C -0.154 4.154 7 C -0.006 4.006 8 C -0.211 4.211 9 N 0.039 4.961 10 N -0.334 5.334 11 C 0.365 3.635 12 O -0.425 6.425 13 C -0.574 4.574 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.371 5.371 17 Si 0.740 3.260 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.190 1.190 21 C 0.041 3.959 22 O -0.213 6.213 23 C -0.031 4.031 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.127 0.873 31 H 0.202 0.798 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.059 0.941 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -14.850 6.926 1.709 16.475 hybrid contribution 0.991 1.764 0.149 2.029 sum -13.859 8.689 1.858 16.463 Atomic orbital electron populations 1.23038 0.79101 1.03735 1.00973 1.86217 1.20642 1.26326 1.88656 1.19408 0.91572 0.84783 0.98396 1.21147 0.99646 0.91965 1.09836 1.20719 0.94295 0.96680 0.99278 1.20994 0.93300 0.97082 1.03994 1.18749 0.91233 0.91761 0.98829 1.23800 0.92194 0.94810 1.10262 1.75196 0.93355 1.26023 1.01541 1.48287 0.98898 1.10783 1.75478 1.16795 0.86718 0.81475 0.78481 1.90729 1.72931 1.25452 1.53358 1.19729 0.89882 0.94173 1.53626 0.91242 1.25745 1.00729 0.94535 0.92481 1.69995 1.37158 0.98255 1.31676 0.86284 0.81826 0.78195 0.79669 1.19046 1.20259 1.19022 1.18351 0.86218 0.87360 1.03984 1.86123 1.69327 1.36799 1.29038 1.22704 0.97508 0.99133 0.83750 0.92937 0.92831 0.88422 0.85507 0.85663 0.85306 0.87300 0.79774 0.91441 0.88459 0.94114 0.95496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.65 10.28 -34.38 -0.35 -5.00 16 3 C 0.10 1.64 6.69 -39.18 -0.26 1.38 16 4 C -0.21 -2.51 9.04 -39.29 -0.36 -2.86 16 5 C -0.09 -1.02 10.02 -39.63 -0.40 -1.42 16 6 C -0.13 -1.69 9.79 -39.06 -0.38 -2.07 16 7 C 0.00 -0.05 5.89 -104.85 -0.62 -0.67 16 8 C 0.00 -0.06 10.76 -14.61 -0.16 -0.21 16 9 N -0.15 -3.46 7.60 32.13 0.24 -3.21 16 10 N -0.59 -14.20 6.26 28.93 0.18 -14.02 16 11 C 0.56 16.17 7.66 -15.31 -0.12 16.05 16 12 O -0.55 -18.01 15.20 4.94 0.08 -17.93 16 13 C -0.54 -14.87 9.26 -37.89 -0.35 -15.22 16 14 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 15 C 0.09 2.40 5.50 -17.34 -0.10 2.31 16 16 N -0.74 -21.72 11.71 55.56 0.65 -21.07 16 17 Si 0.92 19.40 29.56 -169.99 -5.02 14.38 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 C 0.09 1.66 5.76 -38.43 -0.22 1.43 16 22 O -0.30 -6.55 8.51 -33.66 -0.29 -6.84 16 23 C 0.06 1.29 10.38 101.05 1.05 2.34 16 24 H 0.05 0.41 7.65 -51.93 -0.40 0.02 16 25 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.13 1.17 6.27 -52.49 -0.33 0.84 16 28 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.11 1.62 8.03 -52.49 -0.42 1.20 16 31 H 0.37 7.44 8.62 -182.59 -1.57 5.87 16 32 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 33 H 0.10 2.14 8.14 -51.93 -0.42 1.71 16 34 H 0.04 0.85 7.40 -51.93 -0.38 0.47 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 313.29 15.07 4.72 4.72 Total: -1.00 -36.14 313.29 -5.87 -42.01 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.16 Total: 4.65 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.92 Total: 2.32 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 1.08 Total: -38.30 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.56 Total: -29.78 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.14 -5.87 -42.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000143704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.963 kcal (2) G-P(sol) polarization free energy of solvation -36.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds