Wall clock time and date at job start Tue Mar 31 2020 00:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99720 * 2 1 4 4 H 1.48503 * 109.46928 * 269.99802 * 3 2 1 5 5 H 1.48496 * 109.47157 * 29.99671 * 3 2 1 6 6 H 1.48496 * 109.47061 * 150.00103 * 3 2 1 7 7 C 1.37878 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00163 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99674 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46902 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47115 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99880 * 179.97438 * 11 10 9 13 13 O 1.21593 * 120.00049 * 5.02042 * 12 11 10 14 14 N 1.34774 * 119.99852 * 185.01824 * 12 11 10 15 15 C 1.46534 * 124.98388 * 354.91967 * 14 12 11 16 16 C 1.53740 * 105.20031 * 180.02562 * 15 14 12 17 17 C 1.51201 * 104.58159 * 0.02562 * 16 15 14 18 18 C 1.38547 * 108.57371 * 359.97438 * 17 16 15 19 19 C 1.39603 * 119.06879 * 180.02562 * 18 17 16 20 20 C 1.37895 * 120.33736 * 359.97438 * 19 18 17 21 21 C 1.38214 * 120.24795 * 359.73120 * 20 19 18 22 22 C 1.38371 * 130.97629 * 179.97438 * 17 16 15 23 23 F 1.35093 * 119.95184 * 0.02562 * 22 17 16 24 24 H 0.97000 * 120.00160 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47148 * 60.00124 * 9 7 2 26 26 H 1.08997 * 109.47263 * 299.99531 * 9 7 2 27 27 H 1.08995 * 109.47714 * 59.99468 * 10 9 7 28 28 H 1.09010 * 109.46854 * 299.99769 * 10 9 7 29 29 H 0.96992 * 119.99714 * 0.02562 * 11 10 9 30 30 H 1.09005 * 110.29683 * 298.95777 * 15 14 12 31 31 H 1.08994 * 110.29729 * 60.98974 * 15 14 12 32 32 H 1.09000 * 110.41157 * 241.22138 * 16 15 14 33 33 H 1.09007 * 110.41248 * 118.77788 * 16 15 14 34 34 H 1.07996 * 119.83231 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.87670 * 179.97438 * 20 19 18 36 36 H 1.08005 * 120.10457 * 180.29620 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 7 5.4867 -2.6364 0.0009 12 6 6.1606 -3.8035 0.0014 13 8 5.5561 -4.8546 -0.0904 14 7 7.5044 -3.8057 0.1034 15 6 8.3482 -2.6077 0.1130 16 6 9.7881 -3.1299 0.2453 17 6 9.6440 -4.6339 0.3017 18 6 8.2983 -4.9518 0.2147 19 6 7.9149 -6.2938 0.2465 20 6 8.8646 -7.2869 0.3623 21 6 10.2056 -6.9619 0.4424 22 6 10.5944 -5.6328 0.4179 23 9 11.9038 -5.3114 0.5025 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6799 0.8911 26 1 3.8753 -0.6804 -0.8888 27 1 3.6587 -3.1502 -0.8891 28 1 3.6580 -3.1505 0.8908 29 1 5.9716 -1.7964 0.0014 30 1 8.2305 -2.0549 -0.8191 31 1 8.0947 -1.9735 0.9624 32 1 10.2451 -2.7566 1.1618 33 1 10.3799 -2.8372 -0.6222 34 1 6.8694 -6.5556 0.1791 35 1 8.5597 -8.3227 0.3865 36 1 10.9478 -7.7418 0.5283 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274180607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:34 Heat of formation + Delta-G solvation = -44.923519 kcal Electronic energy + Delta-G solvation = -20720.988401 eV Core-core repulsion = 17312.535814 eV Total energy + Delta-G solvation = -3408.452588 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.117 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -49.06973 -41.28915 -38.92783 -36.51022 -35.19955 -32.93178 -32.34200 -30.61645 -29.46472 -29.08112 -25.25135 -23.59093 -23.20133 -21.86494 -20.90613 -20.26681 -18.43067 -17.22228 -16.88532 -16.68214 -16.07855 -16.06140 -15.67428 -15.51886 -14.84495 -14.61227 -14.19432 -13.98119 -13.57767 -13.29532 -13.14964 -12.71120 -12.61927 -12.58796 -12.22186 -11.83520 -11.56557 -11.51309 -11.29244 -10.53255 -10.38677 -10.37436 -10.06914 -9.90796 -9.39477 -8.85667 -8.80707 -8.65361 -7.96172 -6.15793 -4.16540 0.97539 1.03438 2.35347 3.06635 3.21153 3.28520 3.29881 3.53426 3.82577 4.04169 4.18792 4.24905 4.32921 4.70426 4.74169 4.91570 5.06451 5.16862 5.20718 5.23858 5.43804 5.49571 5.68637 5.79437 5.89339 6.06098 6.12288 6.20720 6.27658 6.46915 6.58147 6.75646 6.92501 7.09597 7.15284 7.60165 7.89872 8.38221 8.53587 8.88293 9.43776 10.97154 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.037399 B = 0.003397 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.506590 B = 8240.671208 C = 8949.478729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.077 0.923 9 C -0.021 4.021 10 C 0.145 3.855 11 N -0.730 5.730 12 C 0.711 3.289 13 O -0.568 6.568 14 N -0.571 5.571 15 C 0.096 3.904 16 C -0.075 4.075 17 C -0.190 4.190 18 C 0.208 3.792 19 C -0.146 4.146 20 C -0.062 4.062 21 C -0.186 4.186 22 C 0.140 3.860 23 F -0.140 7.140 24 H 0.265 0.735 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.394 0.606 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.229 -7.910 0.864 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.095 0.905 9 C -0.059 4.059 10 C 0.023 3.977 11 N -0.384 5.384 12 C 0.413 3.587 13 O -0.444 6.444 14 N -0.296 5.296 15 C -0.026 4.026 16 C -0.112 4.112 17 C -0.194 4.194 18 C 0.110 3.890 19 C -0.167 4.167 20 C -0.081 4.081 21 C -0.206 4.206 22 C 0.120 3.880 23 F -0.118 7.118 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.228 0.772 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 22.405 -8.414 0.795 23.946 hybrid contribution 0.784 1.505 -0.007 1.697 sum 23.189 -6.909 0.788 24.209 Atomic orbital electron populations 1.69900 1.06291 1.27128 1.50192 1.24997 0.94768 0.99147 0.94316 0.86750 0.80232 0.83554 0.78519 1.20191 1.21211 1.19127 1.20883 0.88465 0.94982 1.51911 0.90516 1.19800 0.98089 0.91099 0.96900 1.21521 0.73886 1.00360 1.01919 1.45601 1.09269 1.05910 1.77573 1.15689 0.79232 0.85410 0.78372 1.90899 1.66400 1.30663 1.56435 1.45170 1.04985 1.06134 1.73349 1.22185 0.89463 0.87572 1.03396 1.20955 0.95982 0.90198 1.04063 1.19797 0.92400 0.95747 1.11474 1.17873 0.88266 0.87742 0.95092 1.21103 1.02149 0.89408 1.04053 1.20780 0.91321 0.99520 0.96451 1.20972 0.97551 0.94028 1.08087 1.16837 0.76797 0.92250 1.02104 1.91477 1.33083 1.93641 1.93613 0.92474 0.95955 0.96372 0.91641 0.91766 0.77185 0.89629 0.89577 0.88945 0.88961 0.83323 0.84442 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.58 27.47 -169.99 -4.67 15.91 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -5.83 6.54 56.52 0.37 -5.46 16 7 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.02 -0.47 4.16 -27.88 -0.12 -0.58 16 10 C 0.15 2.88 5.62 -4.04 -0.02 2.85 16 11 N -0.73 -11.84 5.51 -65.22 -0.36 -12.20 16 12 C 0.71 11.97 8.42 -86.92 -0.73 11.24 16 13 O -0.57 -11.40 14.54 5.28 0.08 -11.32 16 14 N -0.57 -7.76 3.13 -118.26 -0.37 -8.13 16 15 C 0.10 0.90 6.34 -3.64 -0.02 0.87 16 16 C -0.07 -0.64 6.93 -27.25 -0.19 -0.83 16 17 C -0.19 -2.15 6.21 -104.21 -0.65 -2.80 16 18 C 0.21 2.78 6.62 -83.57 -0.55 2.23 16 19 C -0.15 -1.90 9.46 -39.20 -0.37 -2.27 16 20 C -0.06 -0.62 10.02 -39.72 -0.40 -1.02 16 21 C -0.19 -1.80 10.04 -39.49 -0.40 -2.19 16 22 C 0.14 1.53 7.30 -39.43 -0.29 1.24 16 23 F -0.14 -1.51 17.26 2.25 0.04 -1.48 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 26 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 29 H 0.39 5.27 7.41 -40.82 -0.30 4.96 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 34 H 0.15 2.19 6.29 -52.49 -0.33 1.86 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -32.22 308.56 -8.39 -40.61 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.37 Total: 2.19 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -4.17 Total: -4.08 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.04 Total: -46.49 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.22 -8.39 -40.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274180607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.312 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds