Wall clock time and date at job start Tue Mar 31 2020 00:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99720 * 2 1 4 4 H 1.48503 * 109.46928 * 269.99802 * 3 2 1 5 5 H 1.48496 * 109.47157 * 29.99671 * 3 2 1 6 6 H 1.48496 * 109.47061 * 150.00103 * 3 2 1 7 7 C 1.37878 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00163 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99674 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46902 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47115 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99880 * 179.97438 * 11 10 9 13 13 O 1.21593 * 120.00049 * 5.02042 * 12 11 10 14 14 N 1.34774 * 119.99852 * 185.01824 * 12 11 10 15 15 C 1.46534 * 124.98388 * 354.91967 * 14 12 11 16 16 C 1.53740 * 105.20031 * 180.02562 * 15 14 12 17 17 C 1.51201 * 104.58159 * 0.02562 * 16 15 14 18 18 C 1.38547 * 108.57371 * 359.97438 * 17 16 15 19 19 C 1.39603 * 119.06879 * 180.02562 * 18 17 16 20 20 C 1.37895 * 120.33736 * 359.97438 * 19 18 17 21 21 C 1.38214 * 120.24795 * 359.73120 * 20 19 18 22 22 C 1.38371 * 130.97629 * 179.97438 * 17 16 15 23 23 F 1.35093 * 119.95184 * 0.02562 * 22 17 16 24 24 H 0.97000 * 120.00160 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47148 * 60.00124 * 9 7 2 26 26 H 1.08997 * 109.47263 * 299.99531 * 9 7 2 27 27 H 1.08995 * 109.47714 * 59.99468 * 10 9 7 28 28 H 1.09010 * 109.46854 * 299.99769 * 10 9 7 29 29 H 0.96992 * 119.99714 * 0.02562 * 11 10 9 30 30 H 1.09005 * 110.29683 * 298.95777 * 15 14 12 31 31 H 1.08994 * 110.29729 * 60.98974 * 15 14 12 32 32 H 1.09000 * 110.41157 * 241.22138 * 16 15 14 33 33 H 1.09007 * 110.41248 * 118.77788 * 16 15 14 34 34 H 1.07996 * 119.83231 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.87670 * 179.97438 * 20 19 18 36 36 H 1.08005 * 120.10457 * 180.29620 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 7 5.4867 -2.6364 0.0009 12 6 6.1606 -3.8035 0.0014 13 8 5.5561 -4.8546 -0.0904 14 7 7.5044 -3.8057 0.1034 15 6 8.3482 -2.6077 0.1130 16 6 9.7881 -3.1299 0.2453 17 6 9.6440 -4.6339 0.3017 18 6 8.2983 -4.9518 0.2147 19 6 7.9149 -6.2938 0.2465 20 6 8.8646 -7.2869 0.3623 21 6 10.2056 -6.9619 0.4424 22 6 10.5944 -5.6328 0.4179 23 9 11.9038 -5.3114 0.5025 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6799 0.8911 26 1 3.8753 -0.6804 -0.8888 27 1 3.6587 -3.1502 -0.8891 28 1 3.6580 -3.1505 0.8908 29 1 5.9716 -1.7964 0.0014 30 1 8.2305 -2.0549 -0.8191 31 1 8.0947 -1.9735 0.9624 32 1 10.2451 -2.7566 1.1618 33 1 10.3799 -2.8372 -0.6222 34 1 6.8694 -6.5556 0.1791 35 1 8.5597 -8.3227 0.3865 36 1 10.9478 -7.7418 0.5283 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274180607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:32 Heat of formation + Delta-G solvation = -65.354427 kcal Electronic energy + Delta-G solvation = -20721.874352 eV Core-core repulsion = 17312.535814 eV Total energy + Delta-G solvation = -3409.338538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.89373 -42.29695 -40.08355 -37.42957 -36.77325 -34.84420 -33.35052 -32.13275 -30.58240 -29.92282 -26.95698 -24.56361 -24.22035 -22.73323 -22.59537 -21.45287 -19.56711 -18.99528 -18.08932 -17.62510 -17.05039 -17.00731 -16.62915 -16.54872 -16.25120 -15.97199 -15.63646 -15.30685 -14.99265 -14.61842 -14.19496 -13.93689 -13.49497 -13.43640 -13.32305 -13.15403 -12.91931 -12.65007 -12.33415 -12.21164 -12.18344 -11.76551 -11.55930 -11.35144 -11.29881 -10.79056 -10.23781 -9.68762 -8.90302 -8.29969 -6.37736 0.12668 0.13922 1.24624 1.39778 1.42555 1.53560 1.87124 2.37137 2.61861 2.74248 3.05212 3.22608 3.37529 3.46533 3.97111 4.08548 4.09300 4.24868 4.33652 4.36272 4.40399 4.53769 4.72023 4.73534 4.89960 4.94371 5.00014 5.07331 5.10454 5.32595 5.35929 5.38874 5.43486 5.61718 5.83385 5.94566 6.21768 6.67144 6.73898 7.26143 7.28308 8.86813 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.037399 B = 0.003397 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.506590 B = 8240.671208 C = 8949.478729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.234 1.234 7 C -0.540 4.540 8 H 0.029 0.971 9 C -0.011 4.011 10 C 0.162 3.838 11 N -0.719 5.719 12 C 0.708 3.292 13 O -0.611 6.611 14 N -0.570 5.570 15 C 0.087 3.913 16 C -0.071 4.071 17 C -0.186 4.186 18 C 0.174 3.826 19 C -0.168 4.168 20 C -0.058 4.058 21 C -0.175 4.175 22 C 0.130 3.870 23 F -0.138 7.138 24 H 0.268 0.732 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.412 0.588 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.164 0.836 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.070 -6.471 1.028 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.157 1.157 7 C -0.578 4.578 8 H 0.048 0.952 9 C -0.049 4.049 10 C 0.039 3.961 11 N -0.374 5.374 12 C 0.411 3.589 13 O -0.491 6.491 14 N -0.296 5.296 15 C -0.033 4.033 16 C -0.108 4.108 17 C -0.190 4.190 18 C 0.077 3.923 19 C -0.189 4.189 20 C -0.076 4.076 21 C -0.194 4.194 22 C 0.111 3.889 23 F -0.116 7.116 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.249 0.751 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.181 0.819 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 26.332 -6.973 0.964 27.257 hybrid contribution -0.385 0.887 -0.054 0.968 sum 25.948 -6.087 0.910 26.668 Atomic orbital electron populations 1.70078 1.08644 1.28470 1.51915 1.26090 0.95680 1.03918 0.93640 0.85536 0.79742 0.77243 0.79335 1.19002 1.21383 1.15704 1.21229 0.91491 0.93431 1.51650 0.95228 1.19643 0.94413 0.92551 0.98263 1.21008 0.76133 0.98744 1.00260 1.45158 1.07670 1.06792 1.77771 1.15774 0.80395 0.84678 0.78097 1.90873 1.67878 1.32094 1.58206 1.45102 1.03925 1.07879 1.72665 1.22568 0.89183 0.86361 1.05210 1.21086 0.95729 0.88103 1.05848 1.20052 0.91375 0.97540 1.10070 1.18135 0.89249 0.87766 0.97197 1.21132 1.01592 0.90583 1.05618 1.21036 0.91078 1.00136 0.95366 1.21320 0.97773 0.94415 1.05915 1.17006 0.76841 0.92722 1.02374 1.91485 1.32836 1.93677 1.93618 0.92313 0.94251 0.94463 0.93578 0.93534 0.75100 0.87820 0.87796 0.87081 0.87079 0.86033 0.81878 0.81698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.80 13.96 21.45 0.30 -58.51 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.96 41.30 27.47 68.60 1.88 43.18 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.23 -8.81 6.54 99.48 0.65 -8.16 16 7 C -0.54 -30.30 9.66 25.60 0.25 -30.05 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 9 C -0.01 -0.47 4.16 29.85 0.12 -0.34 16 10 C 0.16 6.51 5.62 86.38 0.49 7.00 16 11 N -0.72 -22.60 5.51 -478.52 -2.64 -25.24 16 12 C 0.71 23.91 8.42 179.06 1.51 25.42 16 13 O -0.61 -25.64 14.54 -4.01 -0.06 -25.70 16 14 N -0.57 -14.92 3.13 -646.32 -2.02 -16.95 16 15 C 0.09 1.37 6.34 86.62 0.55 1.92 16 16 C -0.07 -0.97 6.93 30.26 0.21 -0.76 16 17 C -0.19 -3.82 6.21 -19.60 -0.12 -3.94 16 18 C 0.17 4.53 6.62 38.26 0.25 4.78 16 19 C -0.17 -4.43 9.46 22.52 0.21 -4.22 16 20 C -0.06 -1.08 10.02 22.18 0.22 -0.86 16 21 C -0.17 -2.91 10.04 22.33 0.22 -2.69 16 22 C 0.13 2.51 7.30 22.36 0.16 2.68 16 23 F -0.14 -2.58 17.26 44.97 0.78 -1.80 16 24 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 25 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 26 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.41 9.87 7.41 -92.71 -0.69 9.19 16 30 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.10 1.26 8.12 -2.39 -0.02 1.24 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.12 3.85 6.29 -2.91 -0.02 3.83 16 35 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -73.60 308.56 3.15 -70.45 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.37 Total: 14.95 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 4.54 Total: -0.39 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -4.36 Total: -100.69 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.06 Total: -25.70 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.88 Total: 43.18 kcal Total: -73.60 3.15 -70.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274180607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.097 kcal (2) G-P(sol) polarization free energy of solvation -73.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds