Wall clock time and date at job start Tue Mar 31 2020 00:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34632 * 116.99939 * 2 1 4 4 O 1.21516 * 120.00505 * 0.02562 * 3 2 1 5 5 N 1.34783 * 119.99916 * 180.02562 * 3 2 1 6 6 C 1.46496 * 120.00169 * 180.02562 * 5 3 2 7 7 N 1.40103 * 119.99828 * 359.97438 * 5 3 2 8 8 C 1.34771 * 119.99917 * 105.00081 * 7 5 3 9 9 O 1.21551 * 120.00219 * 0.02562 * 8 7 5 10 10 C 1.47890 * 119.99974 * 179.97438 * 8 7 5 11 11 C 1.39921 * 120.02467 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.35891 * 180.02562 * 11 10 8 13 13 C 1.37746 * 120.41487 * 359.97438 * 12 11 10 14 14 C 1.40748 * 120.03636 * 0.04443 * 13 12 11 15 15 C 1.41440 * 120.17756 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99720 * 24.37140 * 15 14 13 17 17 C 1.39937 * 120.00148 * 204.36580 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.85017 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84477 * 17 15 14 20 20 H 1.48503 * 109.46837 * 90.00406 * 19 17 15 21 21 H 1.48497 * 109.47376 * 210.00134 * 19 17 15 22 22 H 1.48500 * 109.46917 * 330.00618 * 19 17 15 23 23 C 1.38995 * 120.02459 * 180.02562 * 10 8 7 24 24 H 1.09001 * 109.47342 * 59.99461 * 1 2 3 25 25 H 1.08997 * 109.46975 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46785 * 299.99916 * 1 2 3 27 27 H 1.09007 * 109.47064 * 269.99851 * 6 5 3 28 28 H 1.09006 * 109.47032 * 29.99688 * 6 5 3 29 29 H 1.08991 * 109.47344 * 149.99653 * 6 5 3 30 30 H 0.97004 * 119.99944 * 285.00157 * 7 5 3 31 31 H 1.08009 * 119.81903 * 0.02562 * 11 10 8 32 32 H 1.08002 * 119.79301 * 180.02562 * 12 11 10 33 33 H 1.08002 * 119.98415 * 179.97438 * 13 12 11 34 34 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 35 35 H 1.07999 * 120.20287 * 359.70146 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2188 0.0005 5 7 3.4093 1.2701 -0.0005 6 6 4.0744 2.5754 0.0000 7 7 4.1723 0.0951 -0.0005 8 6 4.7922 -0.3058 -1.1280 9 8 4.6897 0.3523 -2.1448 10 6 5.5981 -1.5458 -1.1279 11 6 5.7177 -2.3029 0.0427 12 6 6.4702 -3.4636 0.0507 13 6 7.1099 -3.8879 -1.0930 14 6 7.0014 -3.1393 -2.2799 15 6 7.6574 -3.5719 -3.4559 16 1 7.9010 -4.6161 -3.5853 17 6 7.9908 -2.6471 -4.4518 18 7 8.0251 -1.3693 -4.1729 19 14 8.3871 -3.2369 -6.1794 20 1 7.1406 -3.2809 -6.9854 21 1 9.3528 -2.3029 -6.8120 22 1 8.9826 -4.5956 -6.1141 23 6 6.2381 -1.9595 -2.2903 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.2389 2.8998 -1.0275 28 1 3.4465 3.3029 0.5146 29 1 5.0324 2.4948 0.5134 30 1 4.2543 -0.4299 0.8110 31 1 5.2198 -1.9793 0.9449 32 1 6.5560 -4.0412 0.9593 33 1 7.6959 -4.7950 -1.0788 34 1 8.2557 -0.7282 -4.8632 35 1 6.1453 -1.3803 -3.1972 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286358521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:24 Heat of formation + Delta-G solvation = -55.096674 kcal Electronic energy + Delta-G solvation = -21222.167316 eV Core-core repulsion = 17800.900798 eV Total energy + Delta-G solvation = -3421.266518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61263 -39.20296 -37.31657 -36.63381 -35.56150 -33.84226 -31.86227 -29.83690 -29.50056 -28.37533 -26.19128 -25.36107 -23.18778 -21.21132 -20.83763 -19.90045 -19.02122 -17.91513 -17.12022 -16.59422 -16.09112 -15.67132 -15.20616 -14.78202 -14.40164 -14.05843 -13.91124 -13.80219 -13.30390 -12.87651 -12.80929 -12.60404 -12.39516 -12.14617 -11.73580 -11.24609 -11.16262 -10.87199 -10.81184 -10.79215 -10.56855 -10.17020 -9.81586 -9.68059 -9.29783 -9.26561 -8.77720 -7.75589 -7.61422 -6.87509 -4.48859 1.68953 2.05254 2.71774 2.74333 2.96037 3.04410 3.07641 3.10600 3.69736 3.87018 4.54723 4.72773 5.07938 5.15377 5.24930 5.42208 5.45580 5.51164 5.57289 5.78306 5.98234 6.12918 6.17604 6.44353 6.62635 6.86786 6.91130 7.12228 7.27463 7.36496 7.52049 7.62404 7.78739 7.89959 8.07539 8.14966 8.41371 8.72572 8.74187 8.83037 10.07263 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022246 B = 0.004509 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.355089 B = 6208.048992 C = 6664.147659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.360 6.360 3 C 0.657 3.343 4 O -0.568 6.568 5 N -0.391 5.391 6 C 0.108 3.892 7 N -0.526 5.526 8 C 0.569 3.431 9 O -0.527 6.527 10 C -0.120 4.120 11 C -0.218 4.218 12 C -0.094 4.094 13 C -0.209 4.209 14 C 0.099 3.901 15 C -0.458 4.458 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.782 5.782 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.088 4.088 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.418 0.582 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.286 0.714 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.217 2.210 7.733 10.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.273 6.273 3 C 0.412 3.588 4 O -0.455 6.455 5 N -0.220 5.220 6 C -0.032 4.032 7 N -0.280 5.280 8 C 0.360 3.640 9 O -0.401 6.401 10 C -0.125 4.125 11 C -0.238 4.238 12 C -0.113 4.113 13 C -0.229 4.229 14 C 0.097 3.903 15 C -0.486 4.486 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.406 5.406 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.109 4.109 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.261 0.739 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.531 3.255 6.886 10.711 hybrid contribution 0.149 -0.363 -0.310 0.500 sum -7.383 2.892 6.576 10.301 Atomic orbital electron populations 1.23222 0.74551 1.03615 1.02535 1.86347 1.23962 1.30466 1.86524 1.18114 0.82196 0.82519 0.76008 1.91004 1.62725 1.35102 1.56662 1.45655 0.99168 1.00306 1.76909 1.21962 0.97665 0.79978 1.03605 1.45351 1.50010 1.17771 1.14864 1.19368 0.77819 0.85373 0.81469 1.90734 1.61582 1.55774 1.32046 1.19210 1.02457 0.94066 0.96745 1.20329 1.08469 0.99157 0.95882 1.20435 0.97841 0.95956 0.97046 1.21122 1.05988 1.02886 0.92926 1.17583 0.89770 0.90804 0.92174 1.19624 1.33007 0.95735 1.00279 0.89900 1.25978 0.93128 0.94417 1.01097 1.69773 1.33048 1.02516 1.35303 0.86252 0.79133 0.79779 0.81289 1.19098 1.20173 1.18502 1.21633 0.94843 0.97889 0.96489 0.91848 0.87855 0.91924 0.91283 0.89250 0.89956 0.73917 0.89099 0.88665 0.88444 0.90327 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 10.56 101.05 1.07 1.67 16 2 O -0.36 -5.57 10.17 -40.30 -0.41 -5.98 16 3 C 0.66 11.10 8.53 54.06 0.46 11.56 16 4 O -0.57 -10.19 15.71 -19.28 -0.30 -10.49 16 5 N -0.39 -6.40 3.15 -72.12 -0.23 -6.63 16 6 C 0.11 1.47 10.51 59.84 0.63 2.10 16 7 N -0.53 -8.91 5.49 30.54 0.17 -8.74 16 8 C 0.57 12.14 7.80 -12.31 -0.10 12.05 16 9 O -0.53 -13.06 16.54 5.32 0.09 -12.97 16 10 C -0.12 -2.70 5.87 -105.04 -0.62 -3.32 16 11 C -0.22 -4.30 9.55 -38.92 -0.37 -4.68 16 12 C -0.09 -1.90 10.01 -39.73 -0.40 -2.30 16 13 C -0.21 -4.74 9.78 -38.81 -0.38 -5.12 16 14 C 0.10 2.53 5.57 -106.87 -0.60 1.93 16 15 C -0.46 -11.63 9.05 -37.73 -0.34 -11.97 16 16 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 17 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 18 N -0.78 -20.13 10.95 55.55 0.61 -19.52 16 19 Si 0.91 18.32 29.60 -169.99 -5.03 13.29 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 21 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 C -0.09 -2.27 8.23 -38.44 -0.32 -2.58 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.06 7.42 -51.93 -0.39 0.67 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.42 5.93 6.85 -182.59 -1.25 4.68 16 31 H 0.09 1.45 6.38 -52.48 -0.33 1.11 16 32 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 34 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 35 H 0.13 3.76 5.74 -52.49 -0.30 3.46 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -31.03 312.94 -6.22 -37.24 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.78 Total: 8.02 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.05 Total: 1.06 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.55 Total: -34.89 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.63 Total: -29.44 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.03 -6.22 -37.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286358521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.852 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds