Wall clock time and date at job start Mon Mar 30 2020 23:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.47054 * 2 1 4 4 C 1.34711 * 117.00187 * 179.97438 * 3 2 1 5 5 O 1.21454 * 119.99796 * 359.97438 * 4 3 2 6 6 C 1.47807 * 120.00167 * 180.02562 * 4 3 2 7 7 C 1.40017 * 120.45968 * 353.76074 * 6 4 3 8 8 C 1.38334 * 118.36634 * 180.25346 * 7 6 4 9 9 C 1.39465 * 119.18937 * 359.44371 * 8 7 6 10 10 C 1.48092 * 119.57447 * 180.27223 * 9 8 7 11 11 O 1.21560 * 119.99970 * 0.29974 * 10 9 8 12 12 N 1.34773 * 119.99694 * 180.29463 * 10 9 8 13 13 C 1.36608 * 119.99567 * 179.97438 * 12 10 9 14 14 H 1.07993 * 119.99923 * 0.02562 * 13 12 10 15 15 C 1.39238 * 119.99609 * 180.02562 * 13 12 10 16 16 N 1.31238 * 120.00404 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99688 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47322 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47098 * 120.00109 * 17 15 13 20 20 H 1.48506 * 109.47249 * 239.99888 * 17 15 13 21 21 N 1.32828 * 120.85128 * 0.57533 * 9 8 7 22 22 C 1.31393 * 121.79253 * 359.71801 * 21 9 8 23 23 C 1.50699 * 119.63882 * 180.02562 * 22 21 9 24 24 H 1.09000 * 109.47018 * 60.00051 * 1 2 3 25 25 H 1.08994 * 109.46795 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47264 * 300.00099 * 1 2 3 27 27 H 1.09000 * 109.47264 * 239.99901 * 2 1 3 28 28 H 1.08994 * 109.47100 * 119.99513 * 2 1 3 29 29 H 1.08005 * 120.81433 * 359.97438 * 7 6 4 30 30 H 1.07994 * 120.40309 * 179.69930 * 8 7 6 31 31 H 0.96999 * 120.00387 * 0.02562 * 12 10 9 32 32 H 0.97002 * 120.00153 * 179.97438 * 16 15 13 33 33 H 1.09001 * 109.47075 * 263.38974 * 23 22 21 34 34 H 1.08996 * 109.47259 * 23.39418 * 23 22 21 35 35 H 1.09008 * 109.46916 * 143.39457 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5824 0.0015 6 6 3.9145 2.9114 0.0011 7 6 3.0771 4.0259 -0.1300 8 6 3.6524 5.2839 -0.1293 9 6 5.0350 5.3995 0.0128 10 6 5.6592 6.7424 0.0208 11 8 4.9667 7.7352 -0.0905 12 7 6.9951 6.8637 0.1515 13 6 7.5709 8.1025 0.1584 14 1 6.9557 8.9845 0.0594 15 6 8.9511 8.2278 0.2930 16 7 9.6988 7.1559 0.4127 17 14 9.7385 9.9217 0.3031 18 1 8.6855 10.9580 0.1532 19 1 10.4560 10.1264 1.5870 20 1 10.7001 10.0274 -0.8236 21 7 5.7997 4.3203 0.1350 22 6 5.2922 3.1084 0.1330 23 6 6.2051 1.9179 0.2754 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 2.0087 3.9061 -0.2338 30 1 3.0380 6.1659 -0.2333 31 1 7.5477 6.0715 0.2401 32 1 10.6604 7.2433 0.5061 33 1 6.4357 1.5167 -0.7115 34 1 7.1280 2.2245 0.7677 35 1 5.7119 1.1513 0.8732 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299625921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:02 Heat of formation + Delta-G solvation = -91.683145 kcal Electronic energy + Delta-G solvation = -20698.653284 eV Core-core repulsion = 17275.800258 eV Total energy + Delta-G solvation = -3422.853027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.81142 -39.61016 -37.79649 -36.64480 -34.29155 -32.92421 -32.35737 -31.76449 -31.26401 -27.65483 -26.24599 -24.50266 -23.37532 -21.90990 -21.37166 -19.82869 -18.22458 -17.91747 -17.10990 -16.70129 -16.54368 -15.76022 -14.95402 -14.73335 -14.15953 -14.02962 -13.97746 -13.83414 -13.21817 -13.12892 -13.05554 -12.84591 -12.34966 -12.12086 -11.97897 -11.91210 -11.80622 -11.66281 -11.27215 -10.68872 -10.54723 -10.45891 -10.20066 -9.81154 -9.66706 -9.42926 -8.72265 -8.57425 -8.24658 -6.77084 -3.99281 0.49467 1.50482 2.45897 2.54591 3.03838 3.12851 3.20216 3.56057 3.93061 4.36630 4.37480 4.61808 4.68929 4.72705 4.77009 4.87682 5.02004 5.14183 5.18975 5.42855 5.48595 5.51304 5.69658 5.83153 5.90223 5.91477 5.95990 6.20761 6.24791 6.44864 6.47638 6.88498 7.21654 7.73375 7.76626 8.12228 8.37147 8.87041 9.28138 9.87723 10.37175 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039901 B = 0.003537 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.569295 B = 7913.442720 C = 8585.443060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.356 6.356 4 C 0.519 3.481 5 O -0.505 6.505 6 C -0.208 4.208 7 C -0.020 4.020 8 C -0.158 4.158 9 C 0.158 3.842 10 C 0.448 3.552 11 O -0.600 6.600 12 N -0.506 5.506 13 C -0.285 4.285 14 H 0.115 0.885 15 C 0.025 3.975 16 N -0.861 5.861 17 Si 0.940 3.060 18 H -0.262 1.262 19 H -0.276 1.276 20 H -0.276 1.276 21 N -0.480 5.480 22 C 0.200 3.800 23 C -0.110 4.110 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.407 0.593 32 H 0.281 0.719 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.721 -12.736 -0.288 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.274 6.274 4 C 0.365 3.635 5 O -0.395 6.395 6 C -0.213 4.213 7 C -0.046 4.046 8 C -0.179 4.179 9 C 0.020 3.980 10 C 0.236 3.764 11 O -0.487 6.487 12 N -0.137 5.137 13 C -0.416 4.416 14 H 0.133 0.867 15 C -0.182 4.182 16 N -0.498 5.498 17 Si 0.765 3.235 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.202 1.202 21 N -0.193 5.193 22 C 0.059 3.941 23 C -0.167 4.167 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.163 0.837 30 H 0.169 0.831 31 H 0.243 0.757 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.821 -12.259 -0.247 16.353 hybrid contribution -0.156 -0.022 -0.057 0.168 sum -10.978 -12.280 -0.304 16.474 Atomic orbital electron populations 1.21809 0.92671 1.02894 1.03611 1.23007 0.95255 0.80179 1.02628 1.86547 1.24089 1.32237 1.84492 1.20964 0.80296 0.89579 0.72661 1.90769 1.59678 1.42650 1.46425 1.19823 0.94983 0.90712 1.15809 1.21743 1.00198 0.91055 0.91572 1.21987 0.95420 0.98243 1.02270 1.22029 0.91246 0.93464 0.91232 1.17238 0.83228 0.86228 0.89689 1.90618 1.61918 1.36718 1.59484 1.41982 1.05777 1.10066 1.55843 1.20133 0.90869 0.86077 1.44508 0.86743 1.25619 0.96279 1.00179 0.96126 1.69591 1.07065 1.29381 1.43722 0.85636 0.79110 0.80570 0.78185 1.18605 1.20171 1.20179 1.67805 1.39166 0.97673 1.14656 1.21439 0.90017 0.93457 0.89200 1.21054 0.98408 0.93523 1.03721 0.91438 0.90288 0.91423 0.91202 0.91198 0.83650 0.83135 0.75714 0.90825 0.89980 0.90588 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.58 6.20 37.16 0.23 0.81 16 3 O -0.36 -4.35 9.56 -40.52 -0.39 -4.74 16 4 C 0.52 7.48 7.83 34.64 0.27 7.75 16 5 O -0.51 -7.79 13.15 -19.23 -0.25 -8.04 16 6 C -0.21 -3.29 5.90 -104.73 -0.62 -3.91 16 7 C -0.02 -0.30 9.73 -38.88 -0.38 -0.68 16 8 C -0.16 -2.80 9.62 -39.09 -0.38 -3.17 16 9 C 0.16 3.36 6.75 -82.94 -0.56 2.80 16 10 C 0.45 11.31 7.76 -12.22 -0.09 11.22 16 11 O -0.60 -16.50 15.88 5.31 0.08 -16.41 16 12 N -0.51 -13.27 5.26 -11.78 -0.06 -13.34 16 13 C -0.28 -7.72 9.68 -15.05 -0.15 -7.87 16 14 H 0.11 3.18 7.15 -52.49 -0.38 2.81 16 15 C 0.03 0.64 5.50 -17.43 -0.10 0.54 16 16 N -0.86 -22.42 13.04 55.51 0.72 -21.70 16 17 Si 0.94 19.66 29.55 -169.99 -5.02 14.64 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 N -0.48 -9.74 9.43 -5.75 -0.05 -9.80 16 22 C 0.20 3.51 6.82 -82.20 -0.56 2.95 16 23 C -0.11 -1.66 8.87 36.01 0.32 -1.34 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.15 1.68 7.71 -52.48 -0.40 1.28 16 30 H 0.15 2.56 7.63 -52.49 -0.40 2.16 16 31 H 0.41 10.57 7.21 -40.82 -0.29 10.28 16 32 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.38 5.84 -51.92 -0.30 1.08 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -30.18 312.95 -5.75 -35.94 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -3.87 Total: 10.23 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -1.63 Total: 8.50 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.61 Total: -44.83 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.56 Total: -29.20 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.18 -5.75 -35.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299625921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.747 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds