Wall clock time and date at job start Tue Mar 31 2020 00:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34692 * 117.00214 * 2 1 4 4 O 1.21454 * 119.99967 * 0.02562 * 3 2 1 5 5 C 1.47891 * 120.00409 * 179.97438 * 3 2 1 6 6 C 1.39909 * 120.47107 * 180.02562 * 5 3 2 7 7 C 1.38445 * 118.35395 * 179.97438 * 6 5 3 8 8 C 1.39305 * 119.19439 * 0.02562 * 7 6 5 9 9 C 1.48346 * 119.56323 * 179.97438 * 8 7 6 10 10 O 1.21492 * 120.00174 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99816 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00084 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47131 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.47122 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99968 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99966 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99973 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99857 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46783 * 60.00052 * 18 16 14 20 20 H 1.48504 * 109.47003 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47014 * 300.00451 * 18 16 14 22 22 N 1.32711 * 120.87078 * 359.97438 * 8 7 6 23 23 C 1.31412 * 121.80430 * 0.02562 * 22 8 7 24 24 H 1.09000 * 109.46628 * 300.00098 * 1 2 3 25 25 H 1.08998 * 109.47107 * 59.99275 * 1 2 3 26 26 H 1.08997 * 109.47241 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.82530 * 359.95968 * 6 5 3 28 28 H 1.08002 * 120.40638 * 179.72835 * 7 6 5 29 29 H 0.97002 * 120.00524 * 0.02562 * 11 9 8 30 30 H 1.09000 * 109.46876 * 300.00082 * 12 11 9 31 31 H 1.08990 * 109.47030 * 60.00150 * 12 11 9 32 32 H 1.09000 * 109.46978 * 299.99617 * 13 12 11 33 33 H 1.09006 * 109.47408 * 59.99608 * 13 12 11 34 34 H 0.97006 * 120.00035 * 180.02562 * 17 16 14 35 35 H 1.08002 * 119.64367 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2001 0.0000 4 8 1.4021 2.2187 0.0005 5 6 3.5404 1.2775 0.0006 6 6 4.1858 2.5189 0.0011 7 6 5.5701 2.5403 0.0022 8 6 6.2683 1.3348 0.0021 9 6 7.7517 1.3482 0.0027 10 8 8.3497 2.4057 0.0027 11 7 8.4360 0.1871 0.0032 12 6 9.9010 0.2002 0.0032 13 6 10.4239 -1.2377 0.0031 14 6 11.9308 -1.2242 0.0025 15 1 12.4624 -0.2840 0.0017 16 6 12.6309 -2.4120 0.0028 17 7 11.9835 -3.5568 0.0033 18 14 14.4989 -2.3952 0.0013 19 1 14.9885 -1.6898 1.2129 20 1 15.0064 -3.7909 0.0026 21 1 14.9865 -1.6917 -1.2120 22 7 5.6239 0.1747 0.0016 23 6 4.3113 0.1115 0.0006 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.6182 3.4377 0.0005 28 1 6.1023 3.4801 -0.0018 29 1 7.9586 -0.6573 0.0028 30 1 10.2597 0.7169 -0.8870 31 1 10.2597 0.7176 0.8929 32 1 10.0652 -1.7547 0.8931 33 1 10.0651 -1.7548 -0.8869 34 1 12.4760 -4.3925 0.0039 35 1 3.8228 -0.8517 0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344498317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:42 Heat of formation + Delta-G solvation = -91.970677 kcal Electronic energy + Delta-G solvation = -19957.464357 eV Core-core repulsion = 16534.598862 eV Total energy + Delta-G solvation = -3422.865495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25092 -40.26380 -38.71994 -36.90259 -35.02005 -33.28651 -32.68327 -32.11656 -29.71666 -28.29030 -25.96257 -24.42402 -23.94968 -22.01472 -21.08079 -20.49365 -18.66898 -17.84371 -17.60131 -16.81578 -16.64649 -16.25942 -15.29898 -15.15377 -14.95161 -14.68428 -14.39865 -14.20391 -13.74185 -13.57645 -13.41498 -12.90384 -12.82125 -12.57413 -12.29452 -11.25958 -11.23433 -11.17037 -11.03089 -10.67474 -10.41201 -10.34883 -10.32270 -9.87241 -9.62484 -9.51897 -9.26574 -8.59544 -8.37951 -6.08740 -4.12040 -0.14885 0.82918 1.91599 2.15982 2.83582 3.28306 3.31578 3.35638 3.39773 3.66912 3.91679 4.23240 4.36314 4.41113 4.55754 4.65224 4.68762 4.77156 4.91568 5.10724 5.28113 5.37160 5.54068 5.57756 5.86162 6.07540 6.27972 6.29631 6.68170 6.79314 7.20381 7.33092 7.51905 7.61174 7.88052 7.92881 8.25096 8.45927 8.93508 9.52660 11.02747 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035889 B = 0.002771 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.988768 B =10103.837639 C =10858.078767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.517 3.483 4 O -0.502 6.502 5 C -0.171 4.171 6 C -0.015 4.015 7 C -0.127 4.127 8 C 0.126 3.874 9 C 0.554 3.446 10 O -0.537 6.537 11 N -0.694 5.694 12 C 0.118 3.882 13 C 0.012 3.988 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 N -0.463 5.463 23 C 0.161 3.839 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.156 0.844 28 H 0.161 0.839 29 H 0.410 0.590 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.587 6.965 -0.010 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.268 6.268 3 C 0.361 3.639 4 O -0.390 6.390 5 C -0.175 4.175 6 C -0.040 4.040 7 C -0.148 4.148 8 C -0.012 4.012 9 C 0.337 3.663 10 O -0.415 6.415 11 N -0.342 5.342 12 C -0.004 4.004 13 C -0.025 4.025 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 N -0.174 5.174 23 C 0.000 4.000 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.124 0.876 27 H 0.173 0.827 28 H 0.178 0.822 29 H 0.246 0.754 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -21.784 7.026 -0.011 22.889 hybrid contribution -0.023 0.259 -0.001 0.260 sum -21.807 7.285 -0.011 22.991 Atomic orbital electron populations 1.23344 0.75343 1.04154 1.02792 1.86537 1.24036 1.32136 1.84085 1.20928 0.88528 0.81721 0.72746 1.90849 1.66593 1.36035 1.45546 1.20283 0.90584 0.96345 1.10254 1.21751 0.94021 0.97546 0.90715 1.22158 0.93567 1.00297 0.98748 1.21826 0.95578 0.89361 0.94476 1.17891 0.84923 0.85033 0.78479 1.90776 1.68946 1.30770 1.50992 1.46272 1.09356 1.08168 1.70441 1.21877 0.75370 1.01986 1.01148 1.19331 0.96418 0.88647 0.98115 1.20997 0.90818 0.92716 1.51663 0.92254 1.24997 0.98822 0.95473 0.94966 1.69948 1.35764 0.97332 1.50128 0.86566 0.85168 0.76987 0.78766 1.20115 1.21248 1.20109 1.67757 1.10146 1.28039 1.11429 1.23249 0.88547 0.98224 0.89972 0.91625 0.91633 0.87593 0.82667 0.82169 0.75431 0.92082 0.92073 0.95748 0.95751 0.92754 0.80456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -2.92 9.84 -40.47 -0.40 -3.32 16 3 C 0.52 5.16 7.91 34.68 0.27 5.43 16 4 O -0.50 -6.01 16.20 -19.23 -0.31 -6.32 16 5 C -0.17 -1.70 5.89 -104.74 -0.62 -2.32 16 6 C -0.01 -0.14 9.71 -38.88 -0.38 -0.52 16 7 C -0.13 -1.44 9.62 -39.11 -0.38 -1.81 16 8 C 0.13 1.74 6.75 -82.93 -0.56 1.18 16 9 C 0.55 9.55 7.82 -12.10 -0.09 9.45 16 10 O -0.54 -10.57 16.31 5.37 0.09 -10.48 16 11 N -0.69 -12.51 5.54 -61.09 -0.34 -12.85 16 12 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 13 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 14 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 18 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 N -0.46 -5.95 9.52 -9.46 -0.09 -6.04 16 23 C 0.16 1.64 10.78 -17.16 -0.18 1.45 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.16 1.22 7.73 -52.49 -0.41 0.82 16 28 H 0.16 1.68 7.63 -52.49 -0.40 1.28 16 29 H 0.41 6.89 7.80 -40.82 -0.32 6.57 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.18 1.35 7.62 -52.49 -0.40 0.95 16 LS Contribution 319.67 15.07 4.82 4.82 Total: -1.00 -32.43 319.67 -5.99 -38.41 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.02 Total: 1.24 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.44 Total: 3.60 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.31 Total: -44.20 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.62 Total: -20.12 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.43 -5.99 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344498317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.558 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds