Wall clock time and date at job start Mon Mar 30 2020 23:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34115 * 125.69892 * 2 1 4 4 C 1.38632 * 107.33862 * 180.19065 * 3 2 1 5 5 C 1.46923 * 126.49392 * 179.83290 * 4 3 2 6 6 O 1.21423 * 119.99775 * 359.72058 * 5 4 3 7 7 C 1.49279 * 120.00229 * 179.71901 * 5 4 3 8 8 O 1.21266 * 119.99851 * 5.40048 * 7 5 4 9 9 O 1.34555 * 120.00219 * 185.40201 * 7 5 4 10 10 C 1.45198 * 117.00127 * 185.10526 * 9 7 5 11 11 C 1.52998 * 109.47071 * 184.87938 * 10 9 7 12 12 C 1.50700 * 115.54909 * 296.28556 * 11 10 9 13 13 H 1.08000 * 119.99878 * 95.20211 * 12 11 10 14 14 C 1.37875 * 120.00009 * 274.92206 * 12 11 10 15 15 N 1.31513 * 120.00043 * 355.42115 * 14 12 11 16 16 Si 1.86804 * 120.00151 * 175.41856 * 14 12 11 17 17 H 1.48502 * 109.46756 * 90.00470 * 16 14 12 18 18 H 1.48501 * 109.47046 * 210.00254 * 16 14 12 19 19 H 1.48499 * 109.47066 * 330.00534 * 16 14 12 20 20 C 1.53003 * 117.49891 * 81.95373 * 11 10 9 21 21 C 1.52999 * 117.49861 * 150.61161 * 11 10 9 22 22 C 1.41574 * 107.01670 * 359.58302 * 4 3 2 23 23 N 1.30349 * 107.98746 * 0.25509 * 22 4 3 24 24 H 1.08999 * 109.47031 * 270.29677 * 1 2 3 25 25 H 1.08993 * 109.47283 * 30.30011 * 1 2 3 26 26 H 1.09006 * 109.46895 * 150.29996 * 1 2 3 27 27 H 1.08007 * 126.33218 * 0.03590 * 3 2 1 28 28 H 1.08994 * 109.47214 * 64.87568 * 10 9 7 29 29 H 1.08997 * 109.46868 * 304.87393 * 10 9 7 30 30 H 0.97001 * 120.00306 * 184.99904 * 15 14 12 31 31 H 1.09006 * 117.49923 * 215.00244 * 20 11 10 32 32 H 1.08998 * 117.49742 * 0.02562 * 20 11 10 33 33 H 1.08992 * 117.50124 * 359.97438 * 21 11 10 34 34 H 1.09002 * 117.49674 * 144.97478 * 21 11 10 35 35 H 1.07993 * 126.00216 * 180.28235 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2476 1.0891 0.0000 4 6 3.5633 0.6525 -0.0044 5 6 4.7647 1.4982 -0.0095 6 8 4.6557 2.7076 -0.0152 7 6 6.1193 0.8709 -0.0075 8 8 6.2299 -0.3331 -0.1006 9 8 7.2174 1.6413 0.0976 10 6 8.5028 0.9767 -0.0217 11 6 9.6240 1.9833 0.2438 12 6 9.7237 3.1198 -0.7408 13 1 9.2467 4.0645 -0.5252 14 6 10.4287 2.9555 -1.9142 15 7 11.0889 1.8396 -2.1339 16 14 10.4461 4.3180 -3.1921 17 1 11.5861 5.2317 -2.9260 18 1 10.5923 3.7252 -4.5458 19 1 9.1736 5.0802 -3.1203 20 6 9.9764 2.2797 1.7029 21 6 10.9278 1.4479 0.8391 22 6 3.5302 -0.7629 0.0028 23 7 2.2813 -1.1362 0.0054 24 1 -0.3633 0.0053 1.0276 25 1 -0.3633 0.8872 -0.5184 26 1 -0.3633 -0.8927 -0.5092 27 1 1.9144 2.1165 0.0005 28 1 8.6098 0.5705 -1.0275 29 1 8.5620 0.1669 0.7054 30 1 11.6434 1.7517 -2.9250 31 1 10.2804 3.2968 1.9506 32 1 9.4098 1.7572 2.4736 33 1 10.9866 0.3787 1.0420 34 1 11.8577 1.9174 0.5183 35 1 4.3887 -1.4180 0.0061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346724607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:17 Heat of formation + Delta-G solvation = -4.997110 kcal Electronic energy + Delta-G solvation = -20831.894097 eV Core-core repulsion = 17412.800059 eV Total energy + Delta-G solvation = -3419.094038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.57859 -40.03069 -38.38665 -36.81701 -35.39553 -33.67243 -31.92321 -30.64815 -28.12799 -27.18652 -25.52167 -24.70697 -22.04379 -21.24745 -21.04952 -19.68218 -19.25136 -17.59403 -17.20248 -16.54017 -16.14821 -15.84245 -15.60112 -14.98561 -14.61918 -14.50119 -14.08092 -13.83092 -13.36507 -13.13810 -12.95020 -12.89647 -12.43183 -12.14339 -11.66049 -11.42390 -10.92881 -10.91542 -10.84352 -10.49504 -10.25238 -9.96062 -9.83662 -9.73767 -9.38892 -8.96267 -8.90874 -8.42914 -8.18678 -6.02786 -4.09480 0.72804 1.65967 2.05441 2.42665 2.78648 3.31764 3.38810 3.44482 3.44939 4.18434 4.42403 4.45427 4.70288 4.72915 4.87221 4.95693 4.99880 5.24772 5.26153 5.40319 5.52111 5.91972 6.20452 6.26730 6.31644 6.47788 6.48595 6.60406 6.75580 6.99741 7.06413 7.14669 7.33802 7.35962 7.51934 7.90349 8.15769 8.41503 8.92951 9.56421 11.04900 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.004033 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.487192 B = 6940.221353 C = 7436.401498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.363 5.363 3 C 0.137 3.863 4 C -0.313 4.313 5 C 0.447 3.553 6 O -0.411 6.411 7 C 0.430 3.570 8 O -0.494 6.494 9 O -0.310 6.310 10 C 0.110 3.890 11 C 0.032 3.968 12 C -0.487 4.487 13 H 0.064 0.936 14 C 0.068 3.932 15 N -0.884 5.884 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.206 4.206 21 C -0.137 4.137 22 C 0.115 3.885 23 N -0.306 5.306 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.193 0.807 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.261 0.739 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.526 -3.586 4.416 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.141 5.141 3 C -0.016 4.016 4 C -0.326 4.326 5 C 0.319 3.681 6 O -0.282 6.282 7 C 0.271 3.729 8 O -0.384 6.384 9 O -0.223 6.223 10 C 0.038 3.962 11 C 0.032 3.968 12 C -0.525 4.525 13 H 0.082 0.918 14 C -0.135 4.135 15 N -0.521 5.521 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.195 1.195 20 C -0.243 4.243 21 C -0.175 4.175 22 C -0.073 4.073 23 N -0.126 5.126 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.210 0.790 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -19.401 -4.402 4.226 20.338 hybrid contribution 0.759 1.124 -0.808 1.579 sum -18.642 -3.278 3.418 19.234 Atomic orbital electron populations 1.22023 0.73347 1.05135 1.04012 1.48507 1.07455 1.04098 1.54013 1.23206 0.90023 0.93963 0.94379 1.20351 0.92578 0.94539 1.25115 1.20568 0.86054 0.87841 0.73599 1.90627 1.88236 1.15832 1.33547 1.23921 0.88213 0.86188 0.74598 1.90647 1.87854 1.15775 1.44104 1.86715 1.15111 1.41326 1.79174 1.23101 0.77548 0.94315 1.01275 1.18780 0.90652 0.96344 0.91049 1.20422 1.33453 0.97245 1.01366 0.91781 1.25011 0.95134 0.95571 0.97757 1.69983 1.28989 1.25200 1.27898 0.86584 0.78651 0.82001 0.80859 1.20625 1.21188 1.19543 1.23023 1.05868 1.00262 0.95163 1.22523 0.95668 0.96561 1.02706 1.24778 0.95130 0.94152 0.93210 1.77253 1.02231 1.07251 1.25839 0.90066 0.88928 0.88692 0.79046 0.90541 0.93485 0.92928 0.90011 0.91574 0.91713 0.89060 0.77339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.44 11.44 59.85 0.68 1.12 16 2 N -0.36 -3.55 3.97 -67.47 -0.27 -3.82 16 3 C 0.14 1.41 11.32 -16.41 -0.19 1.23 16 4 C -0.31 -4.30 6.12 -104.96 -0.64 -4.94 16 5 C 0.45 7.46 7.20 -31.47 -0.23 7.23 16 6 O -0.41 -7.54 17.52 -7.73 -0.14 -7.68 16 7 C 0.43 8.32 7.99 35.33 0.28 8.60 16 8 O -0.49 -9.49 13.97 -19.08 -0.27 -9.75 16 9 O -0.31 -7.01 10.00 -45.12 -0.45 -7.46 16 10 C 0.11 2.59 5.39 37.16 0.20 2.79 16 11 C 0.03 0.81 1.70 -155.66 -0.26 0.54 16 12 C -0.49 -13.50 8.75 -34.44 -0.30 -13.80 16 13 H 0.06 1.80 7.82 -52.49 -0.41 1.39 16 14 C 0.07 1.87 5.43 -17.82 -0.10 1.78 16 15 N -0.88 -24.87 12.65 55.43 0.70 -24.17 16 16 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.21 -4.55 9.96 -26.69 -0.27 -4.81 16 21 C -0.14 -3.19 9.15 -26.70 -0.24 -3.43 16 22 C 0.12 1.56 11.13 -16.91 -0.19 1.37 16 23 N -0.31 -3.91 12.48 30.90 0.39 -3.53 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.19 1.34 8.06 -52.48 -0.42 0.91 16 28 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 29 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 30 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 31 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.09 2.25 8.14 -51.93 -0.42 1.83 16 35 H 0.21 2.81 6.28 -52.49 -0.33 2.48 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -32.48 320.55 -5.57 -38.04 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.09 Total: -0.51 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -1.25 Total: -2.32 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.82 Total: -31.52 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.85 Total: -24.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.48 -5.57 -38.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346724607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.046 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds