Wall clock time and date at job start Mon Mar 30 2020 23:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34115 * 125.69892 * 2 1 4 4 C 1.38632 * 107.33862 * 180.19065 * 3 2 1 5 5 C 1.46923 * 126.49392 * 179.83290 * 4 3 2 6 6 O 1.21423 * 119.99775 * 359.72058 * 5 4 3 7 7 C 1.49279 * 120.00229 * 179.71901 * 5 4 3 8 8 O 1.21266 * 119.99851 * 5.40048 * 7 5 4 9 9 O 1.34555 * 120.00219 * 185.40201 * 7 5 4 10 10 C 1.45198 * 117.00127 * 185.10526 * 9 7 5 11 11 C 1.52998 * 109.47071 * 184.87938 * 10 9 7 12 12 C 1.50700 * 115.54909 * 296.28556 * 11 10 9 13 13 H 1.08000 * 119.99878 * 95.20211 * 12 11 10 14 14 C 1.37875 * 120.00009 * 274.92206 * 12 11 10 15 15 N 1.31513 * 120.00043 * 355.42115 * 14 12 11 16 16 Si 1.86804 * 120.00151 * 175.41856 * 14 12 11 17 17 H 1.48502 * 109.46756 * 90.00470 * 16 14 12 18 18 H 1.48501 * 109.47046 * 210.00254 * 16 14 12 19 19 H 1.48499 * 109.47066 * 330.00534 * 16 14 12 20 20 C 1.53003 * 117.49891 * 81.95373 * 11 10 9 21 21 C 1.52999 * 117.49861 * 150.61161 * 11 10 9 22 22 C 1.41574 * 107.01670 * 359.58302 * 4 3 2 23 23 N 1.30349 * 107.98746 * 0.25509 * 22 4 3 24 24 H 1.08999 * 109.47031 * 270.29677 * 1 2 3 25 25 H 1.08993 * 109.47283 * 30.30011 * 1 2 3 26 26 H 1.09006 * 109.46895 * 150.29996 * 1 2 3 27 27 H 1.08007 * 126.33218 * 0.03590 * 3 2 1 28 28 H 1.08994 * 109.47214 * 64.87568 * 10 9 7 29 29 H 1.08997 * 109.46868 * 304.87393 * 10 9 7 30 30 H 0.97001 * 120.00306 * 184.99904 * 15 14 12 31 31 H 1.09006 * 117.49923 * 215.00244 * 20 11 10 32 32 H 1.08998 * 117.49742 * 0.02562 * 20 11 10 33 33 H 1.08992 * 117.50124 * 359.97438 * 21 11 10 34 34 H 1.09002 * 117.49674 * 144.97478 * 21 11 10 35 35 H 1.07993 * 126.00216 * 180.28235 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2476 1.0891 0.0000 4 6 3.5633 0.6525 -0.0044 5 6 4.7647 1.4982 -0.0095 6 8 4.6557 2.7076 -0.0152 7 6 6.1193 0.8709 -0.0075 8 8 6.2299 -0.3331 -0.1006 9 8 7.2174 1.6413 0.0976 10 6 8.5028 0.9767 -0.0217 11 6 9.6240 1.9833 0.2438 12 6 9.7237 3.1198 -0.7408 13 1 9.2467 4.0645 -0.5252 14 6 10.4287 2.9555 -1.9142 15 7 11.0889 1.8396 -2.1339 16 14 10.4461 4.3180 -3.1921 17 1 11.5861 5.2317 -2.9260 18 1 10.5923 3.7252 -4.5458 19 1 9.1736 5.0802 -3.1203 20 6 9.9764 2.2797 1.7029 21 6 10.9278 1.4479 0.8391 22 6 3.5302 -0.7629 0.0028 23 7 2.2813 -1.1362 0.0054 24 1 -0.3633 0.0053 1.0276 25 1 -0.3633 0.8872 -0.5184 26 1 -0.3633 -0.8927 -0.5092 27 1 1.9144 2.1165 0.0005 28 1 8.6098 0.5705 -1.0275 29 1 8.5620 0.1669 0.7054 30 1 11.6434 1.7517 -2.9250 31 1 10.2804 3.2968 1.9506 32 1 9.4098 1.7572 2.4736 33 1 10.9866 0.3787 1.0420 34 1 11.8577 1.9174 0.5183 35 1 4.3887 -1.4180 0.0061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346724607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:16 Heat of formation + Delta-G solvation = -24.391623 kcal Electronic energy + Delta-G solvation = -20832.735106 eV Core-core repulsion = 17412.800059 eV Total energy + Delta-G solvation = -3419.935047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.55897 -41.51020 -39.77949 -38.58788 -37.11519 -34.43952 -34.00800 -31.63620 -29.40813 -28.44242 -27.41863 -26.09077 -23.27647 -22.88223 -22.09088 -21.23543 -20.86277 -18.82204 -18.75811 -18.14778 -17.57398 -17.27224 -16.68660 -16.51899 -16.15367 -15.74811 -15.42215 -15.31498 -14.89275 -14.28549 -14.00602 -13.86516 -13.57549 -13.52385 -13.48454 -12.97358 -12.83407 -12.74894 -12.40240 -12.07475 -11.98184 -11.75846 -11.48759 -10.97231 -10.87804 -10.68491 -10.44802 -10.07268 -9.91055 -8.11952 -6.24417 -0.51241 0.68474 1.16761 1.22742 1.40571 1.43177 1.51466 1.53785 2.15639 2.42653 3.09561 3.15843 3.49070 3.59380 3.69887 3.87835 4.10173 4.13664 4.36289 4.42380 4.44325 4.49583 4.55754 4.64205 4.72841 4.77864 4.98526 5.19027 5.24681 5.37665 5.53037 5.64728 5.74443 5.76131 5.86678 6.35778 6.40543 6.60634 6.79937 7.43875 8.95072 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.004033 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.487192 B = 6940.221353 C = 7436.401498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.352 5.352 3 C 0.165 3.835 4 C -0.343 4.343 5 C 0.458 3.542 6 O -0.436 6.436 7 C 0.423 3.577 8 O -0.495 6.495 9 O -0.331 6.331 10 C 0.122 3.878 11 C -0.002 4.002 12 C -0.506 4.506 13 H 0.050 0.950 14 C 0.025 3.975 15 N -0.907 5.907 16 Si 0.949 3.051 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.273 1.273 20 C -0.183 4.183 21 C -0.134 4.134 22 C 0.108 3.892 23 N -0.324 5.324 24 H 0.100 0.900 25 H 0.126 0.874 26 H 0.099 0.901 27 H 0.231 0.769 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.262 0.738 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.931 -3.174 4.758 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.128 5.128 3 C 0.010 3.990 4 C -0.355 4.355 5 C 0.333 3.667 6 O -0.309 6.309 7 C 0.264 3.736 8 O -0.384 6.384 9 O -0.246 6.246 10 C 0.049 3.951 11 C -0.003 4.003 12 C -0.544 4.544 13 H 0.068 0.932 14 C -0.175 4.175 15 N -0.544 5.544 16 Si 0.774 3.226 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.220 4.220 21 C -0.172 4.172 22 C -0.080 4.080 23 N -0.144 5.144 24 H 0.118 0.882 25 H 0.144 0.856 26 H 0.118 0.882 27 H 0.247 0.753 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -21.837 -4.026 4.578 22.672 hybrid contribution 1.324 0.929 -0.886 1.844 sum -20.513 -3.097 3.691 21.072 Atomic orbital electron populations 1.22546 0.70033 1.07113 1.05902 1.48962 1.09133 1.03076 1.51664 1.23712 0.88577 0.95495 0.91218 1.20200 0.92707 0.94202 1.28425 1.20512 0.85349 0.87770 0.73028 1.90613 1.88011 1.16522 1.35774 1.24706 0.88588 0.86311 0.73967 1.90634 1.87983 1.15930 1.43885 1.86709 1.15561 1.42301 1.80003 1.22751 0.78130 0.94207 1.00062 1.18898 0.92102 0.96750 0.92540 1.20632 1.33476 0.97634 1.02633 0.93220 1.25666 0.94887 0.97657 0.99295 1.70068 1.29478 1.26506 1.28377 0.85693 0.78627 0.79643 0.78627 1.19648 1.20761 1.19749 1.23034 1.04466 1.00382 0.94094 1.22437 0.94324 0.97542 1.02856 1.24665 0.95466 0.94175 0.93705 1.77204 1.02113 1.08921 1.26185 0.88177 0.85551 0.88212 0.75265 0.93321 0.91842 0.92873 0.89931 0.89030 0.90051 0.91041 0.78297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 11.44 127.77 1.46 1.87 16 2 N -0.35 -5.76 3.97 -367.37 -1.46 -7.22 16 3 C 0.17 2.89 11.32 84.44 0.96 3.85 16 4 C -0.34 -9.00 6.12 -20.09 -0.12 -9.13 16 5 C 0.46 15.25 7.20 27.52 0.20 15.45 16 6 O -0.44 -15.85 17.52 9.12 0.16 -15.69 16 7 C 0.42 16.66 7.99 70.80 0.57 17.22 16 8 O -0.49 -19.38 13.97 20.59 0.29 -19.09 16 9 O -0.33 -15.30 10.00 -49.83 -0.50 -15.79 16 10 C 0.12 5.82 5.39 71.98 0.39 6.21 16 11 C 0.00 -0.12 1.70 -52.93 -0.09 -0.21 16 12 C -0.51 -28.58 8.75 25.60 0.22 -28.36 16 13 H 0.05 2.86 7.82 -2.91 -0.02 2.84 16 14 C 0.03 1.41 5.43 84.65 0.46 1.87 16 15 N -0.91 -51.83 12.65 21.45 0.27 -51.56 16 16 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 C -0.18 -7.92 9.96 30.62 0.30 -7.61 16 21 C -0.13 -6.24 9.15 30.62 0.28 -5.96 16 22 C 0.11 2.86 11.13 85.74 0.95 3.82 16 23 N -0.32 -7.78 12.48 -56.14 -0.70 -8.48 16 24 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 25 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.23 2.15 8.06 -2.91 -0.02 2.13 16 28 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.06 2.75 7.93 -2.39 -0.02 2.73 16 30 H 0.26 14.28 8.32 -92.71 -0.77 13.51 16 31 H 0.08 3.53 8.14 -2.38 -0.02 3.51 16 32 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 33 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.07 3.58 8.14 -2.39 -0.02 3.56 16 35 H 0.20 5.49 6.28 -2.91 -0.02 5.47 16 Total: -1.00 -71.24 320.55 6.78 -64.46 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.11 Total: 7.98 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 5.58 Total: -0.98 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -1.89 Total: -67.25 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.05 Total: -50.58 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -71.24 6.78 -64.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346724607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.073 kcal (2) G-P(sol) polarization free energy of solvation -71.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds