Wall clock time and date at job start Mon Mar 30 2020 23:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99986 * 2 1 4 4 H 1.48495 * 109.47524 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47456 * 300.00989 * 3 2 1 6 6 H 1.48503 * 109.46858 * 60.00410 * 3 2 1 7 7 C 1.37879 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99867 * 175.04766 * 7 2 1 9 9 C 1.50697 * 119.99948 * 355.31396 * 7 2 1 10 10 C 1.52999 * 115.55322 * 279.20924 * 9 7 2 11 11 N 1.46499 * 109.46871 * 294.82178 * 10 9 7 12 12 C 1.34782 * 119.99414 * 184.79336 * 11 10 9 13 13 O 1.21278 * 120.00464 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99397 * 180.02562 * 12 11 10 15 15 C 1.50704 * 109.46943 * 179.97438 * 14 12 11 16 16 C 1.38236 * 119.59133 * 124.72388 * 15 14 12 17 17 C 1.38590 * 119.19145 * 179.77345 * 16 15 14 18 18 C 1.38885 * 118.39422 * 0.49462 * 17 16 15 19 19 F 1.35107 * 120.43782 * 179.77258 * 18 17 16 20 20 C 1.38420 * 119.11496 * 359.74874 * 18 17 16 21 21 N 1.31846 * 119.58949 * 305.00141 * 15 14 12 22 22 C 1.53002 * 117.49516 * 133.49895 * 9 7 2 23 23 C 1.52995 * 60.00245 * 252.51352 * 22 9 7 24 24 H 0.96995 * 120.00738 * 4.99088 * 1 2 3 25 25 H 1.08998 * 109.46807 * 54.82216 * 10 9 7 26 26 H 1.08999 * 109.47036 * 174.81704 * 10 9 7 27 27 H 0.96990 * 120.00314 * 4.78746 * 11 10 9 28 28 H 1.08995 * 109.47212 * 299.99268 * 14 12 11 29 29 H 1.09001 * 109.47609 * 60.00190 * 14 12 11 30 30 H 1.08000 * 120.40141 * 0.02562 * 16 15 14 31 31 H 1.07995 * 120.80230 * 180.21940 * 17 16 15 32 32 H 1.07997 * 119.63606 * 179.97438 * 20 18 17 33 33 H 1.09003 * 117.50235 * 0.02562 * 22 9 7 34 34 H 1.09007 * 117.49782 * 145.02107 * 22 9 7 35 35 H 1.09003 * 117.49823 * 252.51352 * 23 22 9 36 36 H 1.08996 * 117.52003 * 107.48186 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1958 -0.0813 9 6 1.2548 -2.4970 0.1055 10 6 0.8319 -2.9019 1.5190 11 7 2.0241 -3.1605 2.3302 12 6 1.8950 -3.6270 3.5881 13 8 0.7920 -3.8322 4.0486 14 6 3.1214 -3.8924 4.4227 15 6 2.7057 -4.4036 5.7780 16 6 3.2060 -5.6080 6.2362 17 6 2.8218 -6.0680 7.4858 18 6 1.9348 -5.2996 8.2285 19 9 1.5292 -5.7110 9.4498 20 6 1.4724 -4.1063 7.7010 21 7 1.8649 -3.6993 6.5097 22 6 1.6414 -3.6154 -0.8644 23 6 0.3184 -2.8689 -1.0459 24 1 -0.4851 0.8368 -0.0731 25 1 0.2533 -2.0958 1.9701 26 1 0.2221 -3.8041 1.4714 27 1 2.9062 -2.9961 1.9620 28 1 3.7433 -4.6383 3.9278 29 1 3.6873 -2.9683 4.5413 30 1 3.8912 -6.1815 5.6295 31 1 3.1996 -7.0037 7.8709 32 1 0.7821 -3.5023 8.2711 33 1 2.4383 -3.4089 -1.5789 34 1 1.5947 -4.6400 -0.4954 35 1 -0.5989 -3.4024 -0.7964 36 1 0.2442 -2.1709 -1.8798 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807460607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:11 Heat of formation + Delta-G solvation = -26.673142 kcal Electronic energy + Delta-G solvation = -20610.349057 eV Core-core repulsion = 17202.687865 eV Total energy + Delta-G solvation = -3407.661192 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.10826 -40.39526 -38.75567 -36.65848 -33.25119 -32.71843 -32.58503 -31.98433 -28.42362 -26.05811 -25.03324 -24.05636 -22.50499 -21.18393 -19.77118 -19.29694 -17.79487 -17.46003 -16.77702 -16.33161 -15.95506 -15.80964 -14.95178 -14.78175 -14.62577 -14.13629 -13.93978 -13.92852 -13.37310 -13.07385 -12.94041 -12.47156 -12.28312 -12.15625 -11.63069 -11.45350 -11.01031 -10.93772 -10.52210 -10.26318 -10.06985 -9.64928 -9.59275 -9.30170 -9.02976 -8.89625 -8.52119 -8.26290 -8.06404 -6.08268 -4.17886 0.76798 0.99352 3.23004 3.24946 3.34307 3.35361 3.43517 3.85787 3.94331 4.20635 4.34816 4.46253 4.58513 4.73301 5.14325 5.19945 5.27641 5.33022 5.43214 5.47969 5.68041 5.72266 5.80789 6.02834 6.32384 6.46699 6.48409 6.56759 6.68251 6.89871 7.10076 7.29986 7.40844 7.49727 7.81106 7.83056 8.31077 8.33176 8.83209 8.91590 9.49515 10.99336 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.025378 B = 0.003703 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.039135 B = 7560.469537 C = 8026.344360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.027 3.973 10 C 0.165 3.835 11 N -0.705 5.705 12 C 0.509 3.491 13 O -0.541 6.541 14 C -0.096 4.096 15 C 0.143 3.857 16 C -0.140 4.140 17 C -0.110 4.110 18 C 0.036 3.964 19 F -0.134 7.134 20 C 0.083 3.917 21 N -0.425 5.425 22 C -0.210 4.210 23 C -0.148 4.148 24 H 0.261 0.739 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.400 0.600 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.166 0.834 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 -10.385 11.285 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.026 3.974 10 C 0.042 3.958 11 N -0.354 5.354 12 C 0.293 3.707 13 O -0.419 6.419 14 C -0.136 4.136 15 C 0.004 3.996 16 C -0.160 4.160 17 C -0.137 4.137 18 C 0.015 3.985 19 F -0.113 7.113 20 C -0.076 4.076 21 N -0.133 5.133 22 C -0.247 4.247 23 C -0.186 4.186 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.234 0.766 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.183 0.817 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.750 -9.613 11.368 16.347 hybrid contribution 0.967 0.149 0.299 1.024 sum 7.717 -9.464 11.668 16.890 Atomic orbital electron populations 1.69987 1.05909 1.26820 1.48237 1.24990 0.94801 0.98983 0.94292 0.86579 0.80139 0.83870 0.77655 1.19697 1.21065 1.20916 1.20390 0.92657 0.88552 1.52224 0.92105 1.19047 0.99019 0.92988 0.86311 1.20952 0.85319 0.98237 0.91305 1.45939 1.11418 1.64875 1.13174 1.20048 0.90155 0.78312 0.82209 1.90695 1.27250 1.52537 1.71390 1.20659 0.98208 1.04145 0.90595 1.20770 0.92315 0.91224 0.95251 1.21879 1.01546 0.96661 0.95921 1.21569 0.96978 1.00394 0.94737 1.18866 1.00038 0.96798 0.82842 1.91507 1.89179 1.90215 1.40415 1.22937 0.99008 0.93185 0.92515 1.67562 1.08641 1.33433 1.03629 1.22980 0.99849 0.95712 1.06179 1.22493 0.91327 1.01763 1.03034 0.92891 0.91245 0.94389 0.76561 0.87369 0.86817 0.83696 0.83655 0.81721 0.90407 0.91713 0.91811 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.16 12.85 55.43 0.71 -23.44 16 2 C 0.07 1.93 5.44 -17.82 -0.10 1.84 16 3 Si 0.89 20.37 29.54 -169.99 -5.02 15.34 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.50 -12.64 8.57 -34.44 -0.30 -12.94 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.03 0.63 1.40 -155.66 -0.22 0.41 16 10 C 0.16 3.71 5.51 -4.04 -0.02 3.69 16 11 N -0.70 -13.15 5.48 -60.30 -0.33 -13.48 16 12 C 0.51 9.15 7.76 -10.98 -0.09 9.07 16 13 O -0.54 -12.03 15.33 5.56 0.09 -11.95 16 14 C -0.10 -1.19 6.10 -29.03 -0.18 -1.37 16 15 C 0.14 1.91 5.76 -82.58 -0.48 1.44 16 16 C -0.14 -1.43 9.71 -39.45 -0.38 -1.81 16 17 C -0.11 -1.09 10.16 -39.21 -0.40 -1.49 16 18 C 0.04 0.42 7.35 -39.27 -0.29 0.13 16 19 F -0.13 -1.53 17.28 2.25 0.04 -1.49 16 20 C 0.08 1.09 11.17 -17.47 -0.20 0.89 16 21 N -0.43 -6.64 9.22 -9.42 -0.09 -6.73 16 22 C -0.21 -4.27 9.95 -26.73 -0.27 -4.54 16 23 C -0.15 -3.35 9.39 -26.73 -0.25 -3.61 16 24 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 25 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 26 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 27 H 0.40 6.64 8.33 -40.82 -0.34 6.30 16 28 H 0.11 0.94 7.87 -51.93 -0.41 0.53 16 29 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.15 0.99 7.95 -52.49 -0.42 0.57 16 31 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.17 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -31.53 322.65 -7.41 -38.94 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.51 Total: 6.24 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -3.15 Total: -8.29 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.30 Total: -43.65 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.53 -7.41 -38.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807460607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.267 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds