Wall clock time and date at job start Mon Mar 30 2020 23:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38840 * 120.75379 * 2 1 4 4 C 1.38062 * 119.31408 * 180.24690 * 3 2 1 5 5 N 1.31953 * 120.84857 * 359.77184 * 4 3 2 6 6 C 1.32345 * 121.62879 * 359.97438 * 5 4 3 7 7 N 1.39393 * 119.69209 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00349 * 354.89038 * 7 6 5 9 9 O 1.21585 * 119.99804 * 5.08595 * 8 7 6 10 10 N 1.34773 * 120.00658 * 185.09270 * 8 7 6 11 11 C 1.46497 * 120.00411 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46875 * 179.97438 * 11 10 8 13 13 O 1.21285 * 120.00273 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99682 * 180.02562 * 12 11 10 15 15 C 1.37093 * 120.00012 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99918 * 359.97438 * 15 14 12 17 17 C 1.38951 * 120.00168 * 179.97438 * 15 14 12 18 18 N 1.31409 * 119.99722 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99936 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46844 * 60.00380 * 19 17 15 21 21 H 1.48503 * 109.47088 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47560 * 300.00180 * 19 17 15 23 23 C 1.38342 * 120.74890 * 179.77273 * 2 1 3 24 24 H 1.08999 * 109.47758 * 270.22752 * 1 2 3 25 25 H 1.09004 * 109.47317 * 30.23051 * 1 2 3 26 26 H 1.09002 * 109.47409 * 150.22376 * 1 2 3 27 27 H 1.08001 * 120.34415 * 0.04441 * 3 2 1 28 28 H 1.07998 * 119.58177 * 179.79112 * 4 3 2 29 29 H 0.97003 * 119.99977 * 174.88924 * 7 6 5 30 30 H 0.97008 * 119.99549 * 359.97438 * 10 8 7 31 31 H 1.08992 * 109.47057 * 299.99671 * 11 10 8 32 32 H 1.08996 * 109.46854 * 60.00322 * 11 10 8 33 33 H 0.96998 * 119.99685 * 359.97438 * 14 12 11 34 34 H 0.97006 * 119.99768 * 180.02562 * 18 17 15 35 35 H 1.07996 * 120.45508 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1932 0.0000 4 6 3.5971 1.1585 -0.0052 5 7 4.2450 0.0090 -0.0056 6 6 3.6042 -1.1490 -0.0006 7 7 4.3293 -2.3394 -0.0018 8 6 5.6723 -2.3105 -0.1120 9 8 6.2589 -1.2455 -0.1172 10 7 6.3649 -3.4618 -0.2165 11 6 7.8246 -3.4302 -0.3368 12 6 8.3509 -4.8388 -0.4373 13 8 7.5824 -5.7768 -0.4105 14 7 9.6758 -5.0563 -0.5559 15 6 10.1546 -6.3376 -0.6478 16 1 9.4702 -7.1728 -0.6248 17 6 11.5204 -6.5618 -0.7706 18 7 12.3531 -5.5456 -0.7990 19 14 12.1728 -8.3077 -0.8951 20 1 11.5917 -8.9691 -2.0911 21 1 13.6524 -8.2757 -1.0177 22 1 11.7928 -9.0663 0.3236 23 6 2.2143 -1.1889 0.0047 24 1 -0.3634 0.0041 1.0276 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3634 -0.8920 -0.5103 27 1 1.6949 2.1386 0.0007 28 1 4.1537 2.0840 -0.0086 29 1 3.8674 -3.1888 0.0767 30 1 5.8969 -4.3115 -0.2121 31 1 8.1035 -2.8732 -1.2311 32 1 8.2511 -2.9452 0.5412 33 1 10.2904 -4.3062 -0.5769 34 1 13.3065 -5.7021 -0.8851 35 1 1.6941 -2.1353 0.0081 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350688675.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:58 Heat of formation + Delta-G solvation = -18.966014 kcal Electronic energy + Delta-G solvation = -20149.918560 eV Core-core repulsion = 16762.511536 eV Total energy + Delta-G solvation = -3387.407024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.85960 -39.40981 -38.16955 -35.13336 -34.39315 -33.89926 -33.55501 -31.38705 -30.20458 -28.08223 -27.45679 -24.59833 -23.43817 -22.61759 -20.38934 -19.58956 -18.63873 -18.11411 -17.43519 -16.20079 -16.06837 -15.69496 -15.46741 -15.07621 -14.60472 -14.54244 -14.30183 -13.99051 -13.91958 -13.46700 -13.11600 -12.90274 -12.77103 -12.19279 -11.99972 -11.93094 -11.62910 -11.11053 -10.73162 -10.50768 -10.32655 -10.24333 -9.63757 -9.62657 -9.09484 -8.82394 -8.63434 -8.28597 -8.10053 -6.51120 -3.93308 1.03742 1.19083 2.49860 3.13776 3.21720 3.25444 3.28923 3.74177 3.88856 3.99909 4.16030 4.40015 4.55864 4.82850 4.88901 4.94427 4.98268 5.17440 5.21440 5.28479 5.43773 5.65684 5.71416 5.91002 5.99763 6.06111 6.09713 6.24672 6.64287 6.70496 6.86963 7.45920 7.85827 7.92047 8.24950 8.45065 8.74823 9.04493 9.39355 9.87153 10.65657 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.059412 B = 0.002684 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.175732 B =10429.373334 C =10873.243319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.017 4.017 3 C -0.217 4.217 4 C 0.137 3.863 5 N -0.477 5.477 6 C 0.389 3.611 7 N -0.671 5.671 8 C 0.693 3.307 9 O -0.534 6.534 10 N -0.721 5.721 11 C 0.129 3.871 12 C 0.428 3.572 13 O -0.599 6.599 14 N -0.548 5.548 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.217 4.217 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.157 0.843 29 H 0.414 0.586 30 H 0.406 0.594 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.396 0.604 34 H 0.275 0.725 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.029 10.740 1.559 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.025 4.025 3 C -0.238 4.238 4 C -0.021 4.021 5 N -0.192 5.192 6 C 0.157 3.843 7 N -0.319 5.319 8 C 0.392 3.608 9 O -0.405 6.405 10 N -0.379 5.379 11 C 0.001 3.999 12 C 0.214 3.786 13 O -0.486 6.486 14 N -0.183 5.183 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.240 4.240 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.150 0.850 28 H 0.174 0.826 29 H 0.250 0.750 30 H 0.244 0.756 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.694 10.992 1.524 21.740 hybrid contribution -0.492 -1.243 -0.033 1.338 sum -19.186 9.749 1.491 21.573 Atomic orbital electron populations 1.20812 0.90213 1.03276 1.02843 1.20023 0.96432 0.92306 0.93716 1.21906 0.95633 0.98461 1.07844 1.22689 0.91363 0.95540 0.92493 1.67740 1.39424 0.96812 1.15177 1.18182 0.87257 0.86087 0.92781 1.42732 1.06444 1.07372 1.75339 1.15932 0.80878 0.84920 0.79063 1.91037 1.67300 1.28302 1.53887 1.44811 1.07452 1.07711 1.77972 1.20815 0.79024 0.96929 1.03166 1.19732 0.83753 0.89512 0.85592 1.90485 1.56444 1.43948 1.57685 1.41779 1.05010 1.09435 1.62066 1.19674 0.91529 0.84433 1.47886 0.87735 1.25331 0.95808 0.99796 0.96788 1.69610 1.03992 1.30914 1.48899 0.85865 0.77434 0.81476 0.79137 1.19785 1.20851 1.19778 1.21264 0.92307 0.99552 1.10926 0.90510 0.90978 0.91067 0.85035 0.82558 0.74989 0.75616 0.89819 0.89816 0.76969 0.91513 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.06 36.00 0.36 -0.27 16 2 C -0.02 -0.15 5.91 -104.36 -0.62 -0.76 16 3 C -0.22 -1.97 9.81 -39.42 -0.39 -2.36 16 4 C 0.14 1.60 11.17 -17.56 -0.20 1.41 16 5 N -0.48 -7.40 7.89 -12.37 -0.10 -7.49 16 6 C 0.39 5.28 7.42 -154.72 -1.15 4.13 16 7 N -0.67 -8.88 5.39 -15.81 -0.09 -8.97 16 8 C 0.69 11.84 8.52 -86.92 -0.74 11.10 16 9 O -0.53 -11.03 14.61 5.29 0.08 -10.95 16 10 N -0.72 -12.22 5.53 -66.42 -0.37 -12.58 16 11 C 0.13 2.42 6.15 -5.19 -0.03 2.39 16 12 C 0.43 9.84 7.85 -10.98 -0.09 9.75 16 13 O -0.60 -15.23 15.24 5.55 0.08 -15.14 16 14 N -0.55 -13.64 5.29 -10.96 -0.06 -13.69 16 15 C -0.31 -8.32 9.68 -14.93 -0.14 -8.46 16 16 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 18 N -0.89 -23.95 13.05 55.50 0.72 -23.22 16 19 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 23 C -0.22 -2.17 9.64 -39.24 -0.38 -2.55 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 26 H 0.07 0.34 8.10 -51.93 -0.42 -0.09 16 27 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 28 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.41 3.91 8.72 -40.82 -0.36 3.56 16 30 H 0.41 6.52 7.46 -40.82 -0.30 6.22 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -34.19 313.94 -7.35 -41.54 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -3.87 Total: 15.29 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: -3.46 Total: 14.96 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: 0.12 Total: -65.96 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: 0.16 Total: -26.09 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.19 -7.35 -41.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350688675.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.570 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds