Wall clock time and date at job start Mon Mar 30 2020 23:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38840 * 120.75379 * 2 1 4 4 C 1.38062 * 119.31408 * 180.24690 * 3 2 1 5 5 N 1.31953 * 120.84857 * 359.77184 * 4 3 2 6 6 C 1.32345 * 121.62879 * 359.97438 * 5 4 3 7 7 N 1.39393 * 119.69209 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00349 * 354.89038 * 7 6 5 9 9 O 1.21585 * 119.99804 * 5.08595 * 8 7 6 10 10 N 1.34773 * 120.00658 * 185.09270 * 8 7 6 11 11 C 1.46497 * 120.00411 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46875 * 179.97438 * 11 10 8 13 13 O 1.21285 * 120.00273 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99682 * 180.02562 * 12 11 10 15 15 C 1.37093 * 120.00012 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99918 * 359.97438 * 15 14 12 17 17 C 1.38951 * 120.00168 * 179.97438 * 15 14 12 18 18 N 1.31409 * 119.99722 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99936 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46844 * 60.00380 * 19 17 15 21 21 H 1.48503 * 109.47088 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47560 * 300.00180 * 19 17 15 23 23 C 1.38342 * 120.74890 * 179.77273 * 2 1 3 24 24 H 1.08999 * 109.47758 * 270.22752 * 1 2 3 25 25 H 1.09004 * 109.47317 * 30.23051 * 1 2 3 26 26 H 1.09002 * 109.47409 * 150.22376 * 1 2 3 27 27 H 1.08001 * 120.34415 * 0.04441 * 3 2 1 28 28 H 1.07998 * 119.58177 * 179.79112 * 4 3 2 29 29 H 0.97003 * 119.99977 * 174.88924 * 7 6 5 30 30 H 0.97008 * 119.99549 * 359.97438 * 10 8 7 31 31 H 1.08992 * 109.47057 * 299.99671 * 11 10 8 32 32 H 1.08996 * 109.46854 * 60.00322 * 11 10 8 33 33 H 0.96998 * 119.99685 * 359.97438 * 14 12 11 34 34 H 0.97006 * 119.99768 * 180.02562 * 18 17 15 35 35 H 1.07996 * 120.45508 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1932 0.0000 4 6 3.5971 1.1585 -0.0052 5 7 4.2450 0.0090 -0.0056 6 6 3.6042 -1.1490 -0.0006 7 7 4.3293 -2.3394 -0.0018 8 6 5.6723 -2.3105 -0.1120 9 8 6.2589 -1.2455 -0.1172 10 7 6.3649 -3.4618 -0.2165 11 6 7.8246 -3.4302 -0.3368 12 6 8.3509 -4.8388 -0.4373 13 8 7.5824 -5.7768 -0.4105 14 7 9.6758 -5.0563 -0.5559 15 6 10.1546 -6.3376 -0.6478 16 1 9.4702 -7.1728 -0.6248 17 6 11.5204 -6.5618 -0.7706 18 7 12.3531 -5.5456 -0.7990 19 14 12.1728 -8.3077 -0.8951 20 1 11.5917 -8.9691 -2.0911 21 1 13.6524 -8.2757 -1.0177 22 1 11.7928 -9.0663 0.3236 23 6 2.2143 -1.1889 0.0047 24 1 -0.3634 0.0041 1.0276 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3634 -0.8920 -0.5103 27 1 1.6949 2.1386 0.0007 28 1 4.1537 2.0840 -0.0086 29 1 3.8674 -3.1888 0.0767 30 1 5.8969 -4.3115 -0.2121 31 1 8.1035 -2.8732 -1.2311 32 1 8.2511 -2.9452 0.5412 33 1 10.2904 -4.3062 -0.5769 34 1 13.3065 -5.7021 -0.8851 35 1 1.6941 -2.1353 0.0081 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350688675.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:57 Heat of formation + Delta-G solvation = -44.453758 kcal Electronic energy + Delta-G solvation = -20151.023792 eV Core-core repulsion = 16762.511536 eV Total energy + Delta-G solvation = -3388.512256 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.90039 -40.68682 -39.87603 -36.36206 -36.04871 -35.32967 -34.55735 -33.37793 -31.18620 -29.06054 -28.64706 -26.45249 -24.27730 -23.66621 -21.54279 -21.36221 -20.13242 -19.79923 -18.56383 -17.51317 -17.04316 -16.92572 -16.86009 -16.45724 -16.29940 -15.95229 -15.66363 -15.13693 -15.05624 -15.01884 -13.97384 -13.91561 -13.55339 -13.53085 -13.51422 -13.29299 -12.89920 -12.54013 -12.47004 -12.13583 -11.77705 -11.56396 -11.56228 -10.56889 -10.38942 -10.24575 -10.09340 -10.07222 -9.21713 -8.50856 -6.01357 0.20049 0.41608 1.32073 1.38245 1.43690 1.54690 1.89152 2.06170 2.27855 2.86529 2.98960 3.16259 3.18031 3.63237 3.87633 4.08951 4.18207 4.23685 4.30334 4.43006 4.43858 4.73271 4.82865 4.87275 4.94058 5.18008 5.23759 5.35104 5.38143 5.48933 5.70601 5.91301 5.93661 6.47318 6.72510 7.02897 7.22677 7.42941 7.51865 7.93447 8.65842 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.059412 B = 0.002684 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.175732 B =10429.373334 C =10873.243319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.019 4.019 3 C -0.203 4.203 4 C 0.112 3.888 5 N -0.529 5.529 6 C 0.354 3.646 7 N -0.659 5.659 8 C 0.695 3.305 9 O -0.574 6.574 10 N -0.718 5.718 11 C 0.143 3.857 12 C 0.435 3.565 13 O -0.623 6.623 14 N -0.559 5.559 15 C -0.338 4.338 16 H 0.088 0.912 17 C -0.012 4.012 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.269 1.269 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.207 4.207 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.164 0.836 28 H 0.168 0.832 29 H 0.430 0.570 30 H 0.412 0.588 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.086 10.872 1.589 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.027 4.027 3 C -0.224 4.224 4 C -0.044 4.044 5 N -0.245 5.245 6 C 0.123 3.877 7 N -0.309 5.309 8 C 0.394 3.606 9 O -0.448 6.448 10 N -0.377 5.377 11 C 0.014 3.986 12 C 0.222 3.778 13 O -0.511 6.511 14 N -0.194 5.194 15 C -0.467 4.467 16 H 0.106 0.894 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.230 4.230 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.181 0.819 28 H 0.185 0.815 29 H 0.270 0.730 30 H 0.250 0.750 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -20.812 11.139 1.559 23.657 hybrid contribution -0.006 -1.171 -0.032 1.171 sum -20.818 9.968 1.527 23.132 Atomic orbital electron populations 1.20889 0.87312 1.04587 1.03993 1.20530 0.98390 0.91622 0.92203 1.22264 0.94627 1.00182 1.05317 1.23007 0.92912 0.95027 0.93491 1.67568 1.41732 0.98363 1.16822 1.18518 0.88559 0.85577 0.95091 1.42493 1.04982 1.08546 1.74870 1.16029 0.81986 0.84025 0.78537 1.91005 1.68563 1.29519 1.55753 1.44691 1.06655 1.08104 1.78236 1.20597 0.80203 0.93860 1.03937 1.20341 0.83010 0.90871 0.83608 1.90461 1.56942 1.45440 1.58262 1.41833 1.05758 1.08956 1.62888 1.19711 0.92068 0.84961 1.49950 0.89450 1.26158 0.95518 1.03762 0.95800 1.69682 1.04382 1.32637 1.48931 0.84909 0.77170 0.76684 0.79110 1.19436 1.19684 1.19421 1.21578 0.90787 1.01485 1.09190 0.89240 0.89547 0.89983 0.81856 0.81534 0.73046 0.75030 0.89024 0.88980 0.76696 0.91053 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.06 71.23 0.72 -0.06 16 2 C -0.02 -0.28 5.91 -19.70 -0.12 -0.40 16 3 C -0.20 -3.23 9.81 22.37 0.22 -3.01 16 4 C 0.11 2.59 11.17 84.63 0.95 3.53 16 5 N -0.53 -16.64 7.89 -193.04 -1.52 -18.16 16 6 C 0.35 9.44 7.42 132.93 0.99 10.42 16 7 N -0.66 -17.26 5.39 -322.20 -1.74 -19.00 16 8 C 0.69 23.96 8.52 179.06 1.53 25.49 16 9 O -0.57 -24.28 14.61 -3.98 -0.06 -24.33 16 10 N -0.72 -24.36 5.53 -482.32 -2.67 -27.03 16 11 C 0.14 5.38 6.15 85.64 0.53 5.91 16 12 C 0.43 20.21 7.85 87.66 0.69 20.90 16 13 O -0.62 -32.04 15.24 -3.04 -0.05 -32.09 16 14 N -0.56 -28.32 5.29 -306.98 -1.62 -29.94 16 15 C -0.34 -18.66 9.68 84.04 0.81 -17.84 16 16 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 17 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 18 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 19 Si 1.00 41.84 29.55 68.60 2.03 43.87 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 C -0.21 -3.71 9.64 22.49 0.22 -3.49 16 24 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.09 0.40 8.10 -2.39 -0.02 0.38 16 26 H 0.08 0.43 8.10 -2.39 -0.02 0.42 16 27 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 28 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 29 H 0.43 7.75 8.72 -92.71 -0.81 6.95 16 30 H 0.41 13.15 7.46 -92.70 -0.69 12.46 16 31 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 32 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 34 H 0.28 14.06 8.31 -92.70 -0.77 13.29 16 35 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -74.87 313.94 0.58 -74.30 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -1.07 Total: 39.89 kcal Atomic # 6 Polarization: 34.32 SS G_CDS: 6.99 Total: 41.31 kcal Atomic # 7 Polarization: -135.67 SS G_CDS: -7.27 Total: -142.94 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -0.10 Total: -56.42 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -74.87 0.58 -74.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350688675.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.844 kcal (2) G-P(sol) polarization free energy of solvation -74.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds