Wall clock time and date at job start Tue Mar 31 2020 01:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47427 * 2 1 4 4 O 1.42902 * 109.46743 * 120.00141 * 2 1 3 5 5 C 1.42905 * 114.00016 * 90.00045 * 4 2 1 6 6 C 1.50697 * 109.46897 * 179.97438 * 5 4 2 7 7 O 1.20826 * 120.00427 * 0.02562 * 6 5 4 8 8 O 1.34236 * 119.99623 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99861 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47010 * 180.02562 * 9 8 6 11 11 C 1.38634 * 119.74914 * 269.72756 * 10 9 8 12 12 C 1.37619 * 120.24942 * 179.72155 * 11 10 9 13 13 C 1.40717 * 119.73953 * 0.57349 * 12 11 10 14 14 C 1.41400 * 120.23665 * 179.68462 * 13 12 11 15 15 H 1.08007 * 119.99684 * 155.31480 * 14 13 12 16 16 C 1.39939 * 120.00333 * 335.30310 * 14 13 12 17 17 N 1.30826 * 120.00025 * 342.23859 * 16 14 13 18 18 Si 1.86800 * 120.00117 * 162.23840 * 16 14 13 19 19 H 1.48494 * 109.47119 * 94.66408 * 18 16 14 20 20 H 1.48501 * 109.47377 * 214.66748 * 18 16 14 21 21 H 1.48501 * 109.47174 * 334.66670 * 18 16 14 22 22 C 1.40711 * 119.51509 * 359.69926 * 13 12 11 23 23 C 1.37617 * 119.74404 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47272 * 300.00400 * 1 2 3 25 25 H 1.09006 * 109.46917 * 59.99724 * 1 2 3 26 26 H 1.08993 * 109.47498 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47229 * 240.00168 * 2 1 3 28 28 H 1.09000 * 109.47712 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47259 * 300.00462 * 3 2 1 30 30 H 1.09004 * 109.46779 * 59.99892 * 3 2 1 31 31 H 1.09000 * 109.46900 * 59.99557 * 5 4 2 32 32 H 1.09003 * 109.47026 * 299.99890 * 5 4 2 33 33 H 1.08994 * 109.46999 * 300.00667 * 9 8 6 34 34 H 1.08996 * 109.46818 * 60.00402 * 9 8 6 35 35 H 1.08008 * 119.87481 * 359.97438 * 11 10 9 36 36 H 1.07995 * 120.12746 * 180.27730 * 12 11 10 37 37 H 0.97003 * 119.99697 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.12552 * 179.97438 * 22 13 12 39 39 H 1.07995 * 119.87428 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.2000 -2.0783 0.9886 6 6 2.7012 -2.6833 2.2746 7 8 2.8743 -1.9836 3.2443 8 8 2.9544 -3.9998 2.3429 9 6 3.4342 -4.5136 3.6134 10 6 3.6624 -5.9990 3.5006 11 6 2.6334 -6.8779 3.8019 12 6 2.8287 -8.2361 3.6969 13 6 4.0823 -8.7319 3.2934 14 6 4.2965 -10.1257 3.1884 15 1 5.0637 -10.5060 2.5301 16 6 3.5147 -11.0122 3.9375 17 7 2.8418 -10.5774 4.9718 18 14 3.4319 -12.8164 3.4607 19 1 4.4330 -13.5823 4.2457 20 1 2.0724 -13.3418 3.7454 21 1 3.7244 -12.9594 2.0118 22 6 5.1211 -7.8307 2.9956 23 6 4.9014 -6.4764 3.1021 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.9318 -2.2467 0.1986 32 1 1.2536 -2.5434 0.7124 33 1 4.3710 -4.0212 3.8740 34 1 2.6929 -4.3174 4.3879 35 1 1.6737 -6.4950 4.1164 36 1 2.0244 -8.9188 3.9278 37 1 2.2996 -11.1919 5.4908 38 1 6.0872 -8.2005 2.6854 39 1 5.6973 -5.7828 2.8744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271831663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:14 Heat of formation + Delta-G solvation = -126.671724 kcal Electronic energy + Delta-G solvation = -20404.831072 eV Core-core repulsion = 17084.001170 eV Total energy + Delta-G solvation = -3320.829902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16710 -38.50222 -37.62679 -35.97957 -33.88270 -33.06056 -30.89017 -29.39382 -28.61492 -27.50181 -26.81530 -23.80094 -21.62116 -21.12061 -20.97087 -20.05604 -17.53571 -17.40518 -17.06045 -16.53747 -16.16088 -15.42606 -15.15709 -14.75030 -14.18848 -13.88128 -13.73496 -13.39065 -12.96133 -12.76028 -12.51072 -12.49346 -12.23380 -12.10932 -12.03954 -11.70230 -11.55642 -11.27622 -11.13175 -11.01506 -10.64079 -10.63760 -10.16644 -10.13859 -9.92268 -9.70279 -9.48405 -9.22652 -7.57678 -7.47107 -6.88523 -4.47704 2.26251 2.41822 2.79615 2.99290 3.01731 3.05572 3.15171 3.84413 3.89297 4.49013 4.60198 4.70881 4.87148 4.93321 5.04213 5.09413 5.30196 5.41775 5.50647 5.54623 5.60430 5.67120 5.69858 5.88102 5.92773 6.07008 6.24322 6.30372 6.81917 6.86182 6.87053 6.96257 7.16764 7.24959 7.50333 7.72461 7.94429 7.99421 8.07498 8.17802 8.52393 8.77147 8.85271 10.05637 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038977 B = 0.002711 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.200576 B =10324.533143 C =10515.371034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.080 3.920 3 C -0.149 4.149 4 O -0.363 6.363 5 C 0.069 3.931 6 C 0.455 3.545 7 O -0.500 6.500 8 O -0.350 6.350 9 C 0.137 3.863 10 C -0.236 4.236 11 C -0.075 4.075 12 C -0.171 4.171 13 C 0.119 3.881 14 C -0.456 4.456 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.786 5.786 18 Si 0.910 3.090 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.230 4.230 23 C -0.063 4.063 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.283 0.717 38 H 0.095 0.905 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 13.333 -8.926 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.022 3.978 3 C -0.207 4.207 4 O -0.282 6.282 5 C -0.009 4.009 6 C 0.297 3.703 7 O -0.388 6.388 8 O -0.268 6.268 9 C 0.066 3.934 10 C -0.237 4.237 11 C -0.093 4.093 12 C -0.190 4.190 13 C 0.116 3.884 14 C -0.485 4.485 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.410 5.410 18 Si 0.734 3.266 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.250 4.250 23 C -0.081 4.081 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.901 13.519 -8.220 16.296 hybrid contribution -0.130 -0.958 -0.161 0.980 sum -4.032 12.562 -8.381 15.630 Atomic orbital electron populations 1.22327 0.95729 1.02657 1.02785 1.22186 0.93876 0.93952 0.87755 1.21855 1.01998 0.94177 1.02624 1.88021 1.86754 1.17740 1.35692 1.21756 1.02109 0.83263 0.93743 1.23099 0.75483 0.81920 0.89834 1.90651 1.47872 1.62276 1.37999 1.86671 1.76176 1.22785 1.41135 1.21750 0.98079 0.92467 0.81121 1.18657 0.96401 0.90460 1.18220 1.20546 0.96089 0.93884 0.98831 1.21296 0.97941 0.93278 1.06478 1.17693 0.90410 0.93032 0.87249 1.19674 1.16060 0.90933 1.21808 0.90153 1.25977 0.93398 1.01802 0.93210 1.69827 1.21775 1.37851 1.11580 0.86274 0.78530 0.81420 0.80417 1.19454 1.19915 1.18300 1.20953 0.98370 0.92574 1.13101 1.20391 0.95020 0.95093 0.97646 0.91558 0.91452 0.92260 0.91744 0.91826 0.91076 0.91599 0.89092 0.89166 0.91960 0.91879 0.89278 0.86260 0.90626 0.88677 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.53 37.16 0.35 -1.02 16 2 C 0.08 0.71 3.34 -26.73 -0.09 0.62 16 3 C -0.15 -1.15 9.56 37.16 0.36 -0.79 16 4 O -0.36 -4.68 9.52 -55.18 -0.53 -5.21 16 5 C 0.07 0.83 6.34 36.00 0.23 1.06 16 6 C 0.45 7.56 8.03 36.00 0.29 7.85 16 7 O -0.50 -9.84 16.25 -25.48 -0.41 -10.25 16 8 O -0.35 -6.40 10.20 -39.27 -0.40 -6.80 16 9 C 0.14 2.66 5.58 36.01 0.20 2.86 16 10 C -0.24 -5.22 5.54 -104.33 -0.58 -5.80 16 11 C -0.07 -1.74 9.67 -39.66 -0.38 -2.13 16 12 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 13 C 0.12 3.11 5.57 -106.82 -0.60 2.51 16 14 C -0.46 -11.76 9.05 -37.74 -0.34 -12.11 16 15 H 0.08 1.98 7.91 -52.48 -0.41 1.57 16 16 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 17 N -0.79 -19.76 10.97 55.55 0.61 -19.15 16 18 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 19 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 22 C -0.23 -5.57 9.80 -38.88 -0.38 -5.95 16 23 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 27 H 0.06 0.46 7.79 -51.93 -0.40 0.06 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.09 0.90 7.87 -51.93 -0.41 0.49 16 33 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 34 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 35 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 36 H 0.12 3.12 6.18 -52.49 -0.32 2.80 16 37 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 38 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -29.45 338.39 -8.15 -37.60 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.74 Total: 3.35 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -1.75 Total: -17.64 kcal Atomic # 7 Polarization: -19.76 SS G_CDS: 0.61 Total: -19.15 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -1.34 Total: -22.26 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.45 -8.15 -37.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271831663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.072 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds