Wall clock time and date at job start Tue Mar 31 2020 01:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47427 * 2 1 4 4 O 1.42902 * 109.46743 * 120.00141 * 2 1 3 5 5 C 1.42905 * 114.00016 * 90.00045 * 4 2 1 6 6 C 1.50697 * 109.46897 * 179.97438 * 5 4 2 7 7 O 1.20826 * 120.00427 * 0.02562 * 6 5 4 8 8 O 1.34236 * 119.99623 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99861 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47010 * 180.02562 * 9 8 6 11 11 C 1.38634 * 119.74914 * 269.72756 * 10 9 8 12 12 C 1.37619 * 120.24942 * 179.72155 * 11 10 9 13 13 C 1.40717 * 119.73953 * 0.57349 * 12 11 10 14 14 C 1.41400 * 120.23665 * 179.68462 * 13 12 11 15 15 H 1.08007 * 119.99684 * 155.31480 * 14 13 12 16 16 C 1.39939 * 120.00333 * 335.30310 * 14 13 12 17 17 N 1.30826 * 120.00025 * 342.23859 * 16 14 13 18 18 Si 1.86800 * 120.00117 * 162.23840 * 16 14 13 19 19 H 1.48494 * 109.47119 * 94.66408 * 18 16 14 20 20 H 1.48501 * 109.47377 * 214.66748 * 18 16 14 21 21 H 1.48501 * 109.47174 * 334.66670 * 18 16 14 22 22 C 1.40711 * 119.51509 * 359.69926 * 13 12 11 23 23 C 1.37617 * 119.74404 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47272 * 300.00400 * 1 2 3 25 25 H 1.09006 * 109.46917 * 59.99724 * 1 2 3 26 26 H 1.08993 * 109.47498 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47229 * 240.00168 * 2 1 3 28 28 H 1.09000 * 109.47712 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47259 * 300.00462 * 3 2 1 30 30 H 1.09004 * 109.46779 * 59.99892 * 3 2 1 31 31 H 1.09000 * 109.46900 * 59.99557 * 5 4 2 32 32 H 1.09003 * 109.47026 * 299.99890 * 5 4 2 33 33 H 1.08994 * 109.46999 * 300.00667 * 9 8 6 34 34 H 1.08996 * 109.46818 * 60.00402 * 9 8 6 35 35 H 1.08008 * 119.87481 * 359.97438 * 11 10 9 36 36 H 1.07995 * 120.12746 * 180.27730 * 12 11 10 37 37 H 0.97003 * 119.99697 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.12552 * 179.97438 * 22 13 12 39 39 H 1.07995 * 119.87428 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.2000 -2.0783 0.9886 6 6 2.7012 -2.6833 2.2746 7 8 2.8743 -1.9836 3.2443 8 8 2.9544 -3.9998 2.3429 9 6 3.4342 -4.5136 3.6134 10 6 3.6624 -5.9990 3.5006 11 6 2.6334 -6.8779 3.8019 12 6 2.8287 -8.2361 3.6969 13 6 4.0823 -8.7319 3.2934 14 6 4.2965 -10.1257 3.1884 15 1 5.0637 -10.5060 2.5301 16 6 3.5147 -11.0122 3.9375 17 7 2.8418 -10.5774 4.9718 18 14 3.4319 -12.8164 3.4607 19 1 4.4330 -13.5823 4.2457 20 1 2.0724 -13.3418 3.7454 21 1 3.7244 -12.9594 2.0118 22 6 5.1211 -7.8307 2.9956 23 6 4.9014 -6.4764 3.1021 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.9318 -2.2467 0.1986 32 1 1.2536 -2.5434 0.7124 33 1 4.3710 -4.0212 3.8740 34 1 2.6929 -4.3174 4.3879 35 1 1.6737 -6.4950 4.1164 36 1 2.0244 -8.9188 3.9278 37 1 2.2996 -11.1919 5.4908 38 1 6.0872 -8.2005 2.6854 39 1 5.6973 -5.7828 2.8744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271831663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:13 Heat of formation + Delta-G solvation = -141.166714 kcal Electronic energy + Delta-G solvation = -20405.459622 eV Core-core repulsion = 17084.001170 eV Total energy + Delta-G solvation = -3321.458452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52116 -39.63117 -39.18901 -37.44204 -35.69282 -33.79482 -32.64381 -31.24567 -29.85759 -28.48041 -28.00216 -25.51626 -22.96740 -22.38789 -22.24833 -21.80275 -19.27650 -18.75391 -18.13382 -17.78634 -17.40479 -17.07061 -16.25111 -16.07266 -15.67548 -15.41346 -15.13466 -14.50460 -14.30347 -14.00720 -13.87802 -13.71863 -13.48696 -13.29050 -13.05837 -13.04913 -12.90824 -12.78122 -12.42033 -12.37436 -12.21987 -11.71690 -11.70181 -11.57059 -11.39081 -11.29509 -11.03570 -10.70863 -9.44691 -9.34701 -8.69871 -6.40208 0.67870 1.10021 1.12605 1.36069 1.39929 1.53625 1.66180 2.19347 2.65912 2.99064 3.60769 3.79330 4.00301 4.05782 4.06936 4.09792 4.15287 4.23771 4.29926 4.47142 4.49621 4.54595 4.76399 4.82810 4.91703 4.95442 5.00037 5.11433 5.29290 5.29713 5.34449 5.38080 5.44976 5.64419 5.87247 6.04961 6.10019 6.13294 6.31059 6.63437 6.73645 6.87824 6.96251 8.27207 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038977 B = 0.002711 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.200576 B =10324.533143 C =10515.371034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 C -0.149 4.149 4 O -0.394 6.394 5 C 0.075 3.925 6 C 0.454 3.546 7 O -0.535 6.535 8 O -0.355 6.355 9 C 0.142 3.858 10 C -0.231 4.231 11 C -0.080 4.080 12 C -0.194 4.194 13 C 0.088 3.912 14 C -0.492 4.492 15 H 0.081 0.919 16 C 0.035 3.965 17 N -0.819 5.819 18 Si 0.985 3.015 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.257 1.257 22 C -0.245 4.245 23 C -0.064 4.064 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.291 0.709 38 H 0.104 0.896 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 14.003 -10.531 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 C -0.206 4.206 4 O -0.314 6.314 5 C -0.002 4.002 6 C 0.298 3.702 7 O -0.425 6.425 8 O -0.273 6.273 9 C 0.070 3.930 10 C -0.232 4.232 11 C -0.098 4.098 12 C -0.213 4.213 13 C 0.085 3.915 14 C -0.521 4.521 15 H 0.099 0.901 16 C -0.181 4.181 17 N -0.444 5.444 18 Si 0.805 3.195 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.181 1.181 22 C -0.264 4.264 23 C -0.082 4.082 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.153 14.212 -9.839 17.778 hybrid contribution -0.062 -0.957 0.325 1.012 sum -4.215 13.256 -9.513 16.852 Atomic orbital electron populations 1.22327 0.95001 1.02798 1.03222 1.22490 0.94523 0.94237 0.87267 1.21894 1.01682 0.93779 1.03266 1.87991 1.87290 1.18039 1.38094 1.21891 1.03858 0.83166 0.91303 1.24037 0.74239 0.80819 0.91098 1.90638 1.49505 1.62674 1.39670 1.86632 1.76374 1.24167 1.40093 1.21555 0.98854 0.90729 0.81882 1.18948 0.95903 0.91986 1.16348 1.20777 0.97344 0.93311 0.98397 1.21270 0.97694 0.94120 1.08227 1.18054 0.91206 0.93952 0.88240 1.19930 1.17510 0.91563 1.23081 0.90135 1.26839 0.92473 1.06252 0.92571 1.69873 1.22402 1.39727 1.12407 0.85156 0.78899 0.75487 0.79989 1.18656 1.18989 1.18074 1.21171 0.98433 0.93359 1.13460 1.20708 0.95946 0.94895 0.96688 0.92906 0.89249 0.92267 0.89523 0.92357 0.88541 0.92855 0.86150 0.86711 0.90986 0.91570 0.87575 0.87775 0.89859 0.87796 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.53 71.98 0.69 -1.63 16 2 C 0.07 1.09 3.34 30.59 0.10 1.19 16 3 C -0.15 -2.00 9.56 71.98 0.69 -1.32 16 4 O -0.39 -9.42 9.52 -129.90 -1.24 -10.66 16 5 C 0.07 1.60 6.34 71.23 0.45 2.06 16 6 C 0.45 14.33 8.03 71.23 0.57 14.90 16 7 O -0.54 -20.58 16.25 28.40 0.46 -20.12 16 8 O -0.36 -12.34 10.20 -51.47 -0.53 -12.86 16 9 C 0.14 5.29 5.58 71.24 0.40 5.68 16 10 C -0.23 -9.99 5.54 -19.68 -0.11 -10.10 16 11 C -0.08 -3.73 9.67 22.22 0.21 -3.51 16 12 C -0.19 -10.16 8.70 22.73 0.20 -9.96 16 13 C 0.09 4.72 5.57 -21.29 -0.12 4.60 16 14 C -0.49 -26.05 9.05 23.46 0.21 -25.84 16 15 H 0.08 4.08 7.91 -2.91 -0.02 4.05 16 16 C 0.03 1.71 5.14 85.25 0.44 2.15 16 17 N -0.82 -42.10 10.97 21.82 0.24 -41.86 16 18 Si 0.98 37.09 29.59 68.60 2.03 39.12 16 19 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 20 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 21 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 22 C -0.24 -11.89 9.80 22.73 0.22 -11.67 16 23 C -0.06 -2.80 9.67 22.22 0.21 -2.59 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.06 0.77 7.87 -2.39 -0.02 0.75 16 27 H 0.09 0.94 7.79 -2.38 -0.02 0.92 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.12 1.89 8.08 -2.39 -0.02 1.88 16 32 H 0.12 1.92 7.87 -2.39 -0.02 1.90 16 33 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 34 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 35 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.10 5.68 6.18 -2.91 -0.02 5.66 16 37 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 38 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -64.77 338.39 6.17 -58.61 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 1.03 Total: 23.83 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 4.17 Total: -36.05 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.24 Total: -41.86 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -1.30 Total: -43.64 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -64.77 6.17 -58.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271831663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.561 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds