Wall clock time and date at job start Tue Mar 31 2020 00:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46993 * 2 1 4 4 C 1.50695 * 109.46812 * 120.00239 * 2 1 3 5 5 O 1.33629 * 125.80544 * 299.99947 * 4 2 1 6 6 C 1.34223 * 110.92251 * 180.02562 * 5 4 2 7 7 C 1.34154 * 109.14544 * 359.70155 * 6 5 4 8 8 C 1.36493 * 125.81039 * 120.00184 * 4 2 1 9 9 C 1.47238 * 127.20033 * 359.97438 * 8 4 2 10 10 O 1.21533 * 119.99845 * 359.97438 * 9 8 4 11 11 O 1.34771 * 119.99818 * 180.02562 * 9 8 4 12 12 C 1.45200 * 116.99752 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47097 * 329.99823 * 12 11 9 14 14 C 1.50701 * 109.47232 * 209.99847 * 12 11 9 15 15 H 1.07999 * 119.99742 * 0.02562 * 14 12 11 16 16 C 1.37875 * 120.00221 * 180.02562 * 14 12 11 17 17 N 1.31519 * 119.99615 * 359.97438 * 16 14 12 18 18 Si 1.86792 * 119.99983 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47366 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47271 * 119.99753 * 18 16 14 21 21 H 1.48496 * 109.47166 * 239.99582 * 18 16 14 22 22 C 1.52997 * 109.46978 * 89.99758 * 12 11 9 23 23 C 1.52999 * 117.50101 * 8.75031 * 22 12 11 24 24 C 1.52996 * 117.50050 * 300.08890 * 22 12 11 25 25 H 1.08994 * 109.47052 * 300.00309 * 1 2 3 26 26 H 1.09004 * 109.46522 * 60.00332 * 1 2 3 27 27 H 1.08994 * 109.47256 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47045 * 240.00340 * 2 1 3 29 29 H 1.09003 * 109.47399 * 299.99766 * 3 2 1 30 30 H 1.08994 * 109.46948 * 59.99944 * 3 2 1 31 31 H 1.09003 * 109.47006 * 180.02562 * 3 2 1 32 32 H 1.07997 * 125.42696 * 180.02562 * 6 5 4 33 33 H 1.08003 * 127.02755 * 180.31196 * 7 6 5 34 34 H 0.96997 * 119.99545 * 180.02562 * 17 16 14 35 35 H 1.09002 * 115.54867 * 154.41643 * 22 12 11 36 36 H 1.08998 * 117.49862 * 359.97438 * 23 22 12 37 37 H 1.09000 * 117.50295 * 145.02180 * 23 22 12 38 38 H 1.09005 * 117.49713 * 214.98330 * 24 22 12 39 39 H 1.08996 * 117.49883 * 359.97027 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.7820 -0.3565 2.4944 6 6 2.3773 -1.1976 3.3545 7 6 3.0361 -2.1401 2.6636 8 6 2.8203 -1.8249 1.2434 9 6 3.3403 -2.5610 0.0792 10 8 3.0739 -2.1857 -1.0456 11 8 4.1110 -3.6517 0.2608 12 6 4.5879 -4.3279 -0.9323 13 1 3.8654 -4.1965 -1.7378 14 6 4.7565 -5.7974 -0.6434 15 1 4.5276 -6.1843 0.3386 16 6 5.2029 -6.6477 -1.6326 17 7 5.4811 -6.1764 -2.8285 18 14 5.4124 -8.4689 -1.2743 19 1 5.0358 -8.7425 0.1358 20 1 4.5392 -9.2557 -2.1819 21 1 6.8294 -8.8563 -1.4918 22 6 5.9335 -3.7331 -1.3521 23 6 6.6026 -2.7499 -0.3894 24 6 5.9723 -2.2410 -1.6882 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 2.3289 -1.1297 4.4313 33 1 3.6094 -2.9613 3.0676 34 1 5.7948 -6.7747 -3.5246 35 1 6.5817 -4.3953 -1.9261 36 1 6.0839 -2.5266 0.5428 37 1 7.6909 -2.7650 -0.3304 38 1 6.6463 -1.9215 -2.4832 39 1 5.0391 -1.6832 -1.6107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123465607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:10 Heat of formation + Delta-G solvation = -58.055728 kcal Electronic energy + Delta-G solvation = -22203.389397 eV Core-core repulsion = 18885.534908 eV Total energy + Delta-G solvation = -3317.854489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.50767 -39.49039 -36.54898 -35.45669 -34.57778 -32.85416 -32.66129 -29.11979 -27.89861 -27.22763 -24.30140 -22.95075 -22.43668 -21.43161 -20.76297 -19.40800 -18.93935 -17.51188 -16.68515 -16.18457 -16.04616 -15.52945 -15.23392 -14.71845 -14.62693 -14.10433 -13.81534 -13.18404 -13.14617 -12.75797 -12.60752 -12.41296 -12.26666 -11.58829 -11.36625 -11.33167 -11.28298 -11.07729 -10.97848 -10.95501 -10.56195 -10.27962 -10.04825 -9.65929 -9.64888 -9.46582 -9.10654 -8.53736 -8.50118 -8.43355 -6.18748 -4.25452 1.46770 2.18742 2.84137 3.23838 3.30898 3.35500 3.64582 3.71116 4.34262 4.46466 4.83232 4.95218 5.02096 5.05563 5.14380 5.27155 5.41990 5.54976 5.65715 5.73112 5.74720 5.87934 5.91014 5.98819 6.08952 6.12122 6.16306 6.17556 6.26129 6.44602 6.48921 6.71402 6.89642 7.04405 7.14270 7.20913 7.58003 7.60302 7.84359 8.12244 8.63034 8.89024 9.38981 10.88652 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022763 B = 0.004988 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.744676 B = 5611.897276 C = 5895.979057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.037 4.037 3 C -0.145 4.145 4 C 0.084 3.916 5 O -0.173 6.173 6 C -0.056 4.056 7 C -0.163 4.163 8 C -0.219 4.219 9 C 0.529 3.471 10 O -0.517 6.517 11 O -0.342 6.342 12 C 0.248 3.752 13 H 0.053 0.947 14 C -0.517 4.517 15 H 0.070 0.930 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.116 4.116 23 C -0.195 4.195 24 C -0.210 4.210 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.133 0.867 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.207 0.793 33 H 0.163 0.837 34 H 0.266 0.734 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 11.829 8.578 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.055 4.055 3 C -0.202 4.202 4 C 0.031 3.969 5 O -0.070 6.070 6 C -0.121 4.121 7 C -0.182 4.182 8 C -0.222 4.222 9 C 0.375 3.625 10 O -0.410 6.410 11 O -0.258 6.258 12 C 0.195 3.805 13 H 0.071 0.929 14 C -0.554 4.554 15 H 0.089 0.911 16 C -0.139 4.139 17 N -0.523 5.523 18 Si 0.736 3.264 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.134 4.134 23 C -0.232 4.232 24 C -0.247 4.247 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.150 0.850 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.224 0.776 33 H 0.180 0.820 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.149 12.062 8.146 15.801 hybrid contribution 0.498 -1.184 0.126 1.291 sum -5.652 10.878 8.272 14.788 Atomic orbital electron populations 1.21834 0.93441 1.02609 1.02326 1.20354 0.96612 0.96383 0.92169 1.21834 1.01717 0.94319 1.02327 1.22776 0.95810 0.94143 0.84147 1.83714 1.59844 1.48453 1.14974 1.23824 1.00525 0.92355 0.95389 1.22994 1.02820 1.01239 0.91177 1.20553 1.08132 1.00031 0.93460 1.19861 0.76074 0.79722 0.86839 1.90684 1.57709 1.67349 1.25287 1.86577 1.59575 1.37523 1.42141 1.20172 0.90035 0.89740 0.80504 0.92917 1.20985 1.45845 0.89724 0.98891 0.91144 1.24896 0.94826 0.99481 0.94647 1.69993 1.44236 1.35535 1.02516 0.86255 0.77859 0.83651 0.78613 1.19459 1.20748 1.20727 1.23015 1.00625 0.89751 1.00045 1.22801 0.98544 1.07622 0.94203 1.23145 1.02530 1.00780 0.98202 0.92365 0.91400 0.92107 0.84954 0.91408 0.92367 0.92131 0.77636 0.81987 0.92462 0.85271 0.89786 0.90468 0.90552 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.18 37.16 0.34 -1.28 16 2 C -0.04 -0.50 3.25 -91.77 -0.30 -0.80 16 3 C -0.14 -1.61 9.18 37.16 0.34 -1.27 16 4 C 0.08 1.28 5.88 -34.94 -0.21 1.08 16 5 O -0.17 -2.34 10.52 7.69 0.08 -2.26 16 6 C -0.06 -0.66 12.03 29.29 0.35 -0.31 16 7 C -0.16 -2.43 11.05 -37.44 -0.41 -2.84 16 8 C -0.22 -3.93 6.32 -103.29 -0.65 -4.58 16 9 C 0.53 11.53 6.90 34.39 0.24 11.77 16 10 O -0.52 -11.89 11.60 -19.29 -0.22 -12.11 16 11 O -0.34 -8.26 8.29 -40.69 -0.34 -8.59 16 12 C 0.25 6.61 2.41 -27.88 -0.07 6.54 16 13 H 0.05 1.56 7.16 -51.93 -0.37 1.19 16 14 C -0.52 -14.40 8.90 -34.44 -0.31 -14.71 16 15 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 16 C 0.06 1.75 5.20 -17.82 -0.09 1.65 16 17 N -0.89 -24.94 11.59 55.43 0.64 -24.29 16 18 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.12 -2.89 5.27 -90.62 -0.48 -3.37 16 23 C -0.19 -4.20 9.80 -26.69 -0.26 -4.46 16 24 C -0.21 -4.64 9.85 -26.70 -0.26 -4.91 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.13 2.12 5.53 -51.93 -0.29 1.84 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.21 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.16 2.25 8.06 -52.48 -0.42 1.83 16 34 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.13 3.50 6.46 -51.93 -0.34 3.16 16 36 H 0.08 1.81 6.91 -51.93 -0.36 1.45 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.09 2.13 5.36 -51.93 -0.28 1.85 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -30.34 326.86 -7.10 -37.45 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.40 Total: 6.44 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -1.77 Total: -17.50 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.64 Total: -24.29 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.48 Total: -22.96 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.34 -7.10 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123465607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.607 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds