Wall clock time and date at job start Tue Mar 31 2020 00:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00355 * 2 1 4 4 H 1.48494 * 109.47212 * 270.00384 * 3 2 1 5 5 H 1.48498 * 109.46734 * 30.00252 * 3 2 1 6 6 H 1.48499 * 109.47222 * 149.99842 * 3 2 1 7 7 C 1.37881 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99876 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00194 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46910 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.46965 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99640 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46690 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47110 * 179.97438 * 14 13 12 16 16 C 1.38238 * 119.99764 * 89.99849 * 15 14 13 17 17 C 1.38234 * 119.99693 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00240 * 0.02562 * 17 16 15 19 19 N 1.48026 * 119.99930 * 179.97438 * 18 17 16 20 20 O 1.21793 * 119.99867 * 0.02562 * 19 18 17 21 21 O 1.21799 * 119.99956 * 179.97438 * 19 18 17 22 22 C 1.38233 * 120.00037 * 0.26327 * 18 17 16 23 23 C 1.38234 * 120.00189 * 270.02172 * 15 14 13 24 24 H 0.97007 * 119.99898 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46809 * 59.99965 * 9 7 2 26 26 H 1.08997 * 109.47010 * 300.00173 * 9 7 2 27 27 H 1.09001 * 109.47249 * 60.00302 * 10 9 7 28 28 H 1.09005 * 109.47227 * 299.99736 * 10 9 7 29 29 H 1.09001 * 109.47227 * 59.99910 * 11 10 9 30 30 H 1.09008 * 109.47148 * 299.99691 * 11 10 9 31 31 H 1.00899 * 111.00177 * 56.04117 * 12 11 10 32 32 H 1.08991 * 109.47666 * 59.99744 * 13 12 11 33 33 H 1.09000 * 109.46798 * 299.99049 * 13 12 11 34 34 H 1.09004 * 109.47390 * 59.99716 * 14 13 12 35 35 H 1.08997 * 109.47467 * 299.99642 * 14 13 12 36 36 H 1.07991 * 120.00287 * 0.02562 * 16 15 14 37 37 H 1.08004 * 120.00214 * 179.97438 * 17 16 15 38 38 H 1.08004 * 119.99939 * 179.72815 * 22 18 17 39 39 H 1.07999 * 119.99990 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 7 6.0410 -4.0217 -0.0014 13 6 7.5096 -4.0609 -0.0008 14 6 7.9808 -5.5165 -0.0007 15 6 9.4872 -5.5568 -0.0007 16 6 10.1781 -5.5752 1.1966 17 6 11.5600 -5.6127 1.1966 18 6 12.2509 -5.6313 -0.0005 19 7 13.7307 -5.6708 -0.0004 20 8 14.3393 -5.6875 1.0544 21 8 14.3395 -5.6877 -1.0552 22 6 11.5603 -5.6069 -1.1977 23 6 10.1782 -5.5749 -1.1978 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8889 26 1 3.8745 -0.6802 -0.8911 27 1 3.6577 -3.1507 -0.8907 28 1 3.6584 -3.1503 0.8893 29 1 5.9147 -2.1228 0.8890 30 1 5.9148 -2.1229 -0.8910 31 1 5.6655 -4.5378 -0.7829 32 1 7.8861 -3.5574 0.8895 33 1 7.8868 -3.5566 -0.8904 34 1 7.6042 -6.0205 -0.8909 35 1 7.6036 -6.0205 0.8891 36 1 9.6383 -5.5611 2.1318 37 1 12.0998 -5.6266 2.1319 38 1 12.1003 -5.6170 -2.1330 39 1 9.6385 -5.5606 -2.1331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:28 Heat of formation + Delta-G solvation = 0.853358 kcal Electronic energy + Delta-G solvation = -19739.047308 eV Core-core repulsion = 16456.040059 eV Total energy + Delta-G solvation = -3283.007248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.51008 -40.13772 -37.03526 -36.89599 -34.57634 -33.14470 -31.92336 -31.56162 -29.52469 -27.02383 -25.51622 -23.70532 -23.16110 -22.09423 -21.62419 -20.08908 -19.76015 -18.99538 -17.85714 -16.81839 -16.43297 -16.33993 -15.72517 -15.32841 -14.65461 -14.45464 -14.38431 -14.03365 -13.90091 -13.55480 -12.76892 -12.51604 -12.32784 -12.08970 -11.91621 -11.86178 -11.76412 -11.49643 -11.47222 -11.38639 -11.00717 -10.83112 -10.02043 -9.91392 -9.89431 -9.78335 -9.59766 -9.21923 -8.57299 -8.45429 -6.07388 -4.05490 -0.57318 0.44600 0.93823 1.04628 2.76070 3.27113 3.34945 3.38026 3.82415 3.86824 4.00078 4.31700 4.41805 4.43479 4.45073 4.72466 4.75568 4.86985 5.13136 5.19749 5.24465 5.26330 5.33372 5.40819 5.53290 5.64875 5.66367 5.79689 5.84186 6.06232 6.07870 6.43652 6.48147 6.83893 7.02997 7.27756 7.28920 7.33557 7.41705 7.76335 8.51081 8.97773 9.55001 11.06064 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038011 B = 0.002164 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.450776 B =12936.674829 C =13227.192790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.057 3.943 12 N -0.691 5.691 13 C 0.063 3.937 14 C -0.090 4.090 15 C -0.021 4.021 16 C -0.114 4.114 17 C -0.051 4.051 18 C -0.054 4.054 19 N 0.030 4.970 20 O -0.163 6.163 21 O -0.164 6.164 22 C -0.052 4.052 23 C -0.117 4.117 24 H 0.263 0.737 25 H 0.016 0.984 26 H 0.009 0.991 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.340 0.660 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.608 -13.255 -0.736 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.072 4.072 12 N -0.322 5.322 13 C -0.066 4.066 14 C -0.128 4.128 15 C -0.022 4.022 16 C -0.133 4.133 17 C -0.070 4.070 18 C -0.137 4.137 19 N 0.549 4.451 20 O -0.378 6.378 21 O -0.379 6.379 22 C -0.071 4.071 23 C -0.135 4.135 24 H 0.073 0.927 25 H 0.034 0.966 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.158 0.842 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 22.692 -13.174 -0.048 26.239 hybrid contribution 0.987 1.222 -0.964 1.843 sum 23.680 -11.952 -1.013 26.545 Atomic orbital electron populations 1.69916 1.06291 1.26879 1.51157 1.25053 0.94756 0.99206 0.94618 0.86762 0.80343 0.83628 0.78435 1.20373 1.21358 1.19067 1.21139 0.89473 0.94469 1.50735 0.91010 1.19542 0.97235 0.92203 0.96121 1.21451 0.90876 0.99785 1.01653 1.22172 0.97821 0.87211 0.99979 1.60511 1.06007 1.15586 1.50065 1.21889 0.89380 0.94314 1.01043 1.20796 0.88600 0.98430 1.04949 1.20455 0.97168 0.91688 0.92867 1.21209 0.92340 1.00476 0.99256 1.21096 0.94785 0.94015 0.97146 1.21143 0.79151 1.16181 0.97218 1.43651 1.03725 0.97353 1.00421 1.94541 1.69167 1.53477 1.20655 1.94541 1.69161 1.53535 1.20674 1.21076 0.94756 0.94096 0.97147 1.21181 0.92388 1.00821 0.99147 0.92736 0.96619 0.97299 0.92978 0.91850 0.91393 0.95669 0.84203 0.90779 0.95172 0.89935 0.88827 0.83220 0.82893 0.82951 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 10 C -0.10 -1.87 5.41 -26.73 -0.14 -2.02 16 11 C 0.06 0.84 5.69 -3.82 -0.02 0.82 16 12 N -0.69 -8.11 6.50 -113.77 -0.74 -8.85 16 13 C 0.06 0.56 5.67 -3.82 -0.02 0.54 16 14 C -0.09 -0.57 5.60 -27.89 -0.16 -0.72 16 15 C -0.02 -0.13 5.13 -104.63 -0.54 -0.66 16 16 C -0.11 -0.68 9.70 -39.58 -0.38 -1.06 16 17 C -0.05 -0.36 9.56 -39.58 -0.38 -0.74 16 18 C -0.05 -0.47 6.85 -79.95 -0.55 -1.01 16 19 N 0.03 0.33 4.45 33.96 0.15 0.48 16 20 O -0.16 -1.92 18.45 -29.46 -0.54 -2.47 16 21 O -0.16 -1.94 18.45 -29.46 -0.54 -2.48 16 22 C -0.05 -0.36 9.56 -39.58 -0.38 -0.74 16 23 C -0.12 -0.68 9.70 -39.58 -0.38 -1.06 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 26 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.03 0.37 8.14 -51.92 -0.42 -0.06 16 31 H 0.34 3.63 8.73 -39.29 -0.34 3.29 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.15 0.90 7.61 -52.48 -0.40 0.50 16 38 H 0.15 0.89 7.61 -52.48 -0.40 0.49 16 39 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -32.09 338.24 -9.69 -41.78 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.72 Total: -3.11 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -3.50 Total: -20.35 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.19 Total: -35.35 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -1.09 Total: -4.95 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.09 -9.69 -41.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.630 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds