Wall clock time and date at job start Tue Mar 31 2020 00:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00355 * 2 1 4 4 H 1.48494 * 109.47212 * 270.00384 * 3 2 1 5 5 H 1.48498 * 109.46734 * 30.00252 * 3 2 1 6 6 H 1.48499 * 109.47222 * 149.99842 * 3 2 1 7 7 C 1.37881 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99876 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00194 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46910 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.46965 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99640 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46690 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47110 * 179.97438 * 14 13 12 16 16 C 1.38238 * 119.99764 * 89.99849 * 15 14 13 17 17 C 1.38234 * 119.99693 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00240 * 0.02562 * 17 16 15 19 19 N 1.48026 * 119.99930 * 179.97438 * 18 17 16 20 20 O 1.21793 * 119.99867 * 0.02562 * 19 18 17 21 21 O 1.21799 * 119.99956 * 179.97438 * 19 18 17 22 22 C 1.38233 * 120.00037 * 0.26327 * 18 17 16 23 23 C 1.38234 * 120.00189 * 270.02172 * 15 14 13 24 24 H 0.97007 * 119.99898 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46809 * 59.99965 * 9 7 2 26 26 H 1.08997 * 109.47010 * 300.00173 * 9 7 2 27 27 H 1.09001 * 109.47249 * 60.00302 * 10 9 7 28 28 H 1.09005 * 109.47227 * 299.99736 * 10 9 7 29 29 H 1.09001 * 109.47227 * 59.99910 * 11 10 9 30 30 H 1.09008 * 109.47148 * 299.99691 * 11 10 9 31 31 H 1.00899 * 111.00177 * 56.04117 * 12 11 10 32 32 H 1.08991 * 109.47666 * 59.99744 * 13 12 11 33 33 H 1.09000 * 109.46798 * 299.99049 * 13 12 11 34 34 H 1.09004 * 109.47390 * 59.99716 * 14 13 12 35 35 H 1.08997 * 109.47467 * 299.99642 * 14 13 12 36 36 H 1.07991 * 120.00287 * 0.02562 * 16 15 14 37 37 H 1.08004 * 120.00214 * 179.97438 * 17 16 15 38 38 H 1.08004 * 119.99939 * 179.72815 * 22 18 17 39 39 H 1.07999 * 119.99990 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 7 6.0410 -4.0217 -0.0014 13 6 7.5096 -4.0609 -0.0008 14 6 7.9808 -5.5165 -0.0007 15 6 9.4872 -5.5568 -0.0007 16 6 10.1781 -5.5752 1.1966 17 6 11.5600 -5.6127 1.1966 18 6 12.2509 -5.6313 -0.0005 19 7 13.7307 -5.6708 -0.0004 20 8 14.3393 -5.6875 1.0544 21 8 14.3395 -5.6877 -1.0552 22 6 11.5603 -5.6069 -1.1977 23 6 10.1782 -5.5749 -1.1978 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8889 26 1 3.8745 -0.6802 -0.8911 27 1 3.6577 -3.1507 -0.8907 28 1 3.6584 -3.1503 0.8893 29 1 5.9147 -2.1228 0.8890 30 1 5.9148 -2.1229 -0.8910 31 1 5.6655 -4.5378 -0.7829 32 1 7.8861 -3.5574 0.8895 33 1 7.8868 -3.5566 -0.8904 34 1 7.6042 -6.0205 -0.8909 35 1 7.6036 -6.0205 0.8891 36 1 9.6383 -5.5611 2.1318 37 1 12.0998 -5.6266 2.1319 38 1 12.1003 -5.6170 -2.1330 39 1 9.6385 -5.5606 -2.1331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:27 Heat of formation + Delta-G solvation = -18.171480 kcal Electronic energy + Delta-G solvation = -19739.872287 eV Core-core repulsion = 16456.040059 eV Total energy + Delta-G solvation = -3283.832227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.27751 -40.66730 -38.01089 -37.72104 -35.86206 -34.57117 -33.09736 -32.40317 -30.51171 -28.33346 -26.55636 -24.22494 -24.18753 -23.28669 -22.34996 -21.62904 -20.41195 -19.78668 -18.90504 -18.63911 -17.17488 -16.98007 -16.49552 -16.34255 -15.79153 -15.60475 -15.24446 -14.95429 -14.72315 -14.67727 -14.21068 -13.73806 -13.55476 -12.93303 -12.89873 -12.79496 -12.73736 -12.53862 -12.42475 -12.35442 -12.29101 -11.98326 -11.78370 -11.50794 -11.44837 -11.26460 -10.76304 -10.38490 -10.35078 -9.36403 -8.29257 -6.33454 -1.28310 -0.01540 0.25213 0.36693 1.35742 1.38104 1.49948 2.25122 2.36250 3.06011 3.11215 3.39112 3.50801 3.75858 3.83413 3.96985 4.10079 4.22359 4.29818 4.33208 4.38660 4.62776 4.68086 4.68440 4.77072 4.82278 4.89173 4.90587 4.99710 5.10658 5.13418 5.17668 5.33089 5.50552 5.53454 5.62161 5.67246 6.06679 6.29887 6.42914 6.50274 6.75331 7.31170 8.87565 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038011 B = 0.002164 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.450776 B =12936.674829 C =13227.192790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.001 4.001 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.533 4.533 8 H 0.030 0.970 9 C -0.012 4.012 10 C -0.092 4.092 11 C 0.070 3.930 12 N -0.696 5.696 13 C 0.064 3.936 14 C -0.081 4.081 15 C -0.017 4.017 16 C -0.111 4.111 17 C -0.055 4.055 18 C -0.073 4.073 19 N 0.032 4.968 20 O -0.186 6.186 21 O -0.185 6.185 22 C -0.055 4.055 23 C -0.111 4.111 24 H 0.266 0.734 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.032 0.968 31 H 0.347 0.653 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.840 -12.877 -1.013 27.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.197 4.197 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.571 4.571 8 H 0.049 0.951 9 C -0.050 4.050 10 C -0.130 4.130 11 C -0.059 4.059 12 N -0.327 5.327 13 C -0.065 4.065 14 C -0.118 4.118 15 C -0.018 4.018 16 C -0.129 4.129 17 C -0.074 4.074 18 C -0.156 4.156 19 N 0.545 4.455 20 O -0.398 6.398 21 O -0.398 6.398 22 C -0.075 4.075 23 C -0.130 4.130 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.166 0.834 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.187 0.813 37 H 0.177 0.823 38 H 0.178 0.822 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 23.974 -12.824 -0.326 27.190 hybrid contribution 0.457 1.006 -0.879 1.412 sum 24.430 -11.818 -1.204 27.165 Atomic orbital electron populations 1.70079 1.08363 1.28144 1.52759 1.26092 0.95681 1.03743 0.94207 0.85602 0.79500 0.78000 0.79188 1.19136 1.21131 1.16829 1.21538 0.92363 0.93014 1.50205 0.95139 1.19506 0.93713 0.95316 0.96458 1.21272 0.94118 0.96704 1.00893 1.21870 0.94482 0.89247 1.00341 1.60412 1.08017 1.13631 1.50684 1.21926 0.87289 0.96103 1.01180 1.20698 0.88404 0.96795 1.05914 1.20531 0.97099 0.91160 0.93026 1.21452 0.91758 0.99482 1.00215 1.21275 0.95355 0.93873 0.96942 1.21387 0.77382 1.18189 0.98660 1.44023 1.04884 0.96652 0.99962 1.94519 1.70133 1.54375 1.20795 1.94517 1.70123 1.54336 1.20802 1.21276 0.95375 0.93889 0.96913 1.21446 0.91759 0.99621 1.00127 0.92547 0.96244 0.96333 0.93273 0.93204 0.91380 0.94987 0.83424 0.91045 0.94632 0.88530 0.88485 0.81284 0.82256 0.82217 0.81164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 2 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 3 Si 0.95 43.71 27.47 68.60 1.88 45.59 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 7 C -0.53 -30.60 9.66 25.60 0.25 -30.35 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 10 C -0.09 -3.35 5.41 30.59 0.17 -3.18 16 11 C 0.07 1.88 5.69 86.30 0.49 2.37 16 12 N -0.70 -14.27 6.50 -513.85 -3.34 -17.61 16 13 C 0.06 0.91 5.67 86.30 0.49 1.40 16 14 C -0.08 -0.71 5.60 29.85 0.17 -0.54 16 15 C -0.02 -0.15 5.13 -19.87 -0.10 -0.25 16 16 C -0.11 -1.00 9.70 22.27 0.22 -0.79 16 17 C -0.06 -0.69 9.56 22.27 0.21 -0.48 16 18 C -0.07 -1.19 6.85 36.37 0.25 -0.94 16 19 N 0.03 0.70 4.45 -46.46 -0.21 0.49 16 20 O -0.19 -4.48 18.45 18.89 0.35 -4.13 16 21 O -0.19 -4.45 18.45 18.89 0.35 -4.10 16 22 C -0.06 -0.67 9.56 22.27 0.21 -0.46 16 23 C -0.11 -0.94 9.70 22.27 0.22 -0.73 16 24 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 25 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 26 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.35 6.38 8.73 -89.70 -0.78 5.59 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.10 0.63 8.09 -2.38 -0.02 0.62 16 35 H 0.10 0.86 8.09 -2.39 -0.02 0.84 16 36 H 0.17 0.85 8.06 -2.92 -0.02 0.82 16 37 H 0.16 1.70 7.61 -2.91 -0.02 1.68 16 38 H 0.16 1.64 7.61 -2.91 -0.02 1.62 16 39 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 Total: -1.00 -70.77 338.24 2.69 -68.08 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 0.21 Total: 5.10 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 3.15 Total: -33.96 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -3.25 Total: -76.58 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.70 Total: -8.23 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Total: -70.77 2.69 -68.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.913 kcal (2) G-P(sol) polarization free energy of solvation -70.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds