Wall clock time and date at job start Tue Mar 31 2020 00:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48503 * 109.47321 * 239.99802 * 3 2 1 5 5 H 1.48496 * 109.47384 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46935 * 120.00306 * 3 2 1 7 7 C 1.38948 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99703 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00226 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99738 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00184 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47115 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00032 * 66.04210 * 13 12 10 15 15 C 1.52998 * 109.46863 * 52.26071 * 14 13 12 16 16 O 1.42901 * 109.47086 * 65.40346 * 15 14 13 17 17 C 1.46900 * 110.99889 * 190.00051 * 13 12 10 18 18 C 1.50696 * 109.46853 * 161.32296 * 17 13 12 19 19 C 1.38235 * 120.00111 * 92.72796 * 18 17 13 20 20 C 1.38235 * 120.00121 * 179.97438 * 19 18 17 21 21 C 1.38236 * 120.00126 * 359.95494 * 20 19 18 22 22 C 1.38237 * 119.99595 * 0.27725 * 21 20 19 23 23 C 1.38233 * 120.00013 * 272.69897 * 18 17 13 24 24 H 0.97000 * 119.99885 * 0.02562 * 1 2 3 25 25 H 0.97002 * 120.00327 * 359.97438 * 9 7 2 26 26 H 1.08992 * 109.46950 * 60.00129 * 12 10 9 27 27 H 1.09003 * 109.46857 * 299.99686 * 12 10 9 28 28 H 1.08998 * 109.46707 * 172.25832 * 14 13 12 29 29 H 1.09000 * 109.47427 * 292.25905 * 14 13 12 30 30 H 1.09004 * 109.47050 * 185.39742 * 15 14 13 31 31 H 1.09002 * 109.47157 * 305.39852 * 15 14 13 32 32 H 0.96702 * 113.99804 * 180.02562 * 16 15 14 33 33 H 1.08997 * 109.47208 * 41.32004 * 17 13 12 34 34 H 1.09002 * 109.46860 * 281.32165 * 17 13 12 35 35 H 1.07998 * 119.99944 * 359.97127 * 19 18 17 36 36 H 1.07999 * 120.00148 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.00181 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.99596 * 179.72812 * 22 21 20 39 39 H 1.08005 * 120.00255 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5577 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1984 -5.9795 0.0007 14 6 2.9628 -6.0178 1.2546 15 6 1.9972 -5.9985 2.4412 16 8 1.2218 -7.1988 2.4439 17 6 1.5141 -7.2573 -0.2380 18 6 2.5181 -8.2892 -0.6830 19 6 3.1216 -9.1131 0.2486 20 6 4.0422 -10.0601 -0.1596 21 6 4.3586 -10.1839 -1.4995 22 6 3.7586 -9.3568 -2.4306 23 6 2.8350 -8.4124 -2.0228 24 1 -0.4850 0.8401 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.6175 -4.9204 -0.8902 27 1 0.6167 -4.9208 0.8897 28 1 3.5610 -6.9283 1.2877 29 1 3.6196 -5.1494 1.3064 30 1 2.5640 -5.9301 3.3698 31 1 1.3341 -5.1376 2.3561 32 1 0.5862 -7.2548 3.1706 33 1 0.7597 -7.1261 -1.0137 34 1 1.0346 -7.5901 0.6826 35 1 2.8740 -9.0168 1.2954 36 1 4.5141 -10.7034 0.5683 37 1 5.0781 -10.9234 -1.8184 38 1 4.0090 -9.4505 -3.4770 39 1 2.3635 -7.7688 -2.7507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050515223.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:58 Heat of formation + Delta-G solvation = -44.526608 kcal Electronic energy + Delta-G solvation = -21657.623202 eV Core-core repulsion = 18372.648130 eV Total energy + Delta-G solvation = -3284.975071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.60148 -38.51518 -37.25098 -35.32030 -33.83842 -31.64700 -31.22316 -30.74553 -29.01797 -27.33095 -24.86051 -24.00828 -22.41772 -21.68743 -20.30408 -18.98788 -17.79602 -17.50707 -16.63198 -16.29158 -15.90011 -15.24263 -14.90537 -14.59440 -14.46398 -13.73665 -13.70881 -13.62710 -13.26517 -13.03941 -12.84364 -12.40116 -12.24932 -11.78228 -11.61340 -11.49450 -11.29557 -11.10515 -10.92807 -10.76408 -10.64246 -10.43531 -10.20688 -9.78869 -9.46016 -8.74638 -8.60539 -8.36059 -7.95534 -7.64232 -6.40883 -3.81637 1.50873 1.56924 3.20281 3.25934 3.30352 3.82141 3.92214 4.17012 4.26300 4.51057 4.99547 5.04212 5.10836 5.14567 5.24997 5.28046 5.29393 5.42212 5.53630 5.59739 5.70170 5.76124 5.82672 5.97373 6.11473 6.16080 6.21729 6.29153 6.39277 6.54269 6.62739 6.64219 6.87662 7.17167 7.40054 7.50367 7.55957 7.61242 8.07740 8.63467 9.19337 9.55949 10.08325 10.76857 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.003887 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.075926 B = 7201.861504 C = 7649.309072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.578 6.578 12 C 0.040 3.960 13 N -0.503 5.503 14 C 0.051 3.949 15 C 0.031 3.969 16 O -0.566 6.566 17 C 0.068 3.932 18 C -0.061 4.061 19 C -0.110 4.110 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.101 4.101 24 H 0.272 0.728 25 H 0.391 0.609 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.366 0.634 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.518 -17.007 2.089 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.462 6.462 12 C -0.091 4.091 13 N -0.225 5.225 14 C -0.077 4.077 15 C -0.048 4.048 16 O -0.372 6.372 17 C -0.059 4.059 18 C -0.062 4.062 19 C -0.128 4.128 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.119 4.119 24 H 0.081 0.919 25 H 0.224 0.776 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.132 0.868 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.214 0.786 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.887 -16.856 1.160 17.001 hybrid contribution -1.080 0.970 1.104 1.824 sum 0.807 -15.886 2.264 16.067 Atomic orbital electron populations 1.69602 1.05926 1.28212 1.50705 1.25243 0.95612 0.99663 0.97385 0.85933 0.78766 0.80542 0.79068 1.19886 1.21010 1.19958 1.19647 0.93325 0.82251 1.47615 0.87990 1.41862 1.09142 1.04573 1.64624 1.19786 0.88415 0.84550 0.84283 1.90476 1.13737 1.86901 1.55041 1.21976 0.94283 0.91207 1.01626 1.61734 1.25343 1.01112 1.34326 1.22555 0.95730 1.04538 0.84844 1.23188 0.94641 0.86843 1.00095 1.86498 1.55646 1.41885 1.53195 1.21583 0.93840 0.88255 1.02180 1.19832 0.97483 0.95680 0.93161 1.21156 0.96626 0.95462 0.99582 1.21086 0.98640 0.99005 0.95849 1.21062 1.00321 0.99842 0.93484 1.21107 0.97491 0.96422 0.99319 1.21087 0.97600 0.97448 0.95808 0.91860 0.77551 0.89566 0.92973 0.90631 0.86758 0.93566 0.92750 0.78600 0.91218 0.89242 0.85859 0.86625 0.86699 0.86498 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.57 -14.22 5.29 -10.96 -0.06 -14.28 16 10 C 0.44 10.41 7.55 -10.99 -0.08 10.33 16 11 O -0.58 -15.44 13.89 5.54 0.08 -15.36 16 12 C 0.04 0.73 5.03 -4.97 -0.03 0.70 16 13 N -0.50 -8.69 4.37 -237.52 -1.04 -9.73 16 14 C 0.05 0.86 5.42 -3.82 -0.02 0.84 16 15 C 0.03 0.43 6.73 37.16 0.25 0.68 16 16 O -0.57 -6.59 10.37 -35.23 -0.37 -6.95 16 17 C 0.07 0.99 5.00 -4.98 -0.02 0.97 16 18 C -0.06 -0.87 5.07 -104.63 -0.53 -1.40 16 19 C -0.11 -1.45 8.27 -39.58 -0.33 -1.78 16 20 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 21 C -0.13 -1.50 10.05 -39.58 -0.40 -1.89 16 22 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 23 C -0.10 -1.39 9.71 -39.58 -0.38 -1.78 16 24 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 26 H 0.09 1.45 7.84 -51.93 -0.41 1.04 16 27 H 0.05 0.86 5.72 -51.93 -0.30 0.57 16 28 H 0.08 1.20 5.94 -51.93 -0.31 0.89 16 29 H 0.11 2.27 6.05 -51.93 -0.31 1.96 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.82 5.87 -51.93 -0.30 0.51 16 32 H 0.37 2.77 9.12 45.62 0.42 3.18 16 33 H 0.07 0.96 7.72 -51.93 -0.40 0.56 16 34 H 0.09 1.26 4.51 -51.88 -0.23 1.02 16 35 H 0.12 1.56 7.76 -52.49 -0.41 1.16 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 39 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 320.21 15.07 4.83 4.83 Total: -1.00 -31.47 320.21 -7.64 -39.11 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -4.20 Total: 15.27 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.58 Total: -5.13 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.37 Total: -47.77 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.29 Total: -22.31 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.47 -7.64 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050515223.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.412 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds