Wall clock time and date at job start Tue Mar 31 2020 00:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48503 * 109.47321 * 239.99802 * 3 2 1 5 5 H 1.48496 * 109.47384 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46935 * 120.00306 * 3 2 1 7 7 C 1.38948 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99703 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00226 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99738 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00184 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47115 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00032 * 66.04210 * 13 12 10 15 15 C 1.52998 * 109.46863 * 52.26071 * 14 13 12 16 16 O 1.42901 * 109.47086 * 65.40346 * 15 14 13 17 17 C 1.46900 * 110.99889 * 190.00051 * 13 12 10 18 18 C 1.50696 * 109.46853 * 161.32296 * 17 13 12 19 19 C 1.38235 * 120.00111 * 92.72796 * 18 17 13 20 20 C 1.38235 * 120.00121 * 179.97438 * 19 18 17 21 21 C 1.38236 * 120.00126 * 359.95494 * 20 19 18 22 22 C 1.38237 * 119.99595 * 0.27725 * 21 20 19 23 23 C 1.38233 * 120.00013 * 272.69897 * 18 17 13 24 24 H 0.97000 * 119.99885 * 0.02562 * 1 2 3 25 25 H 0.97002 * 120.00327 * 359.97438 * 9 7 2 26 26 H 1.08992 * 109.46950 * 60.00129 * 12 10 9 27 27 H 1.09003 * 109.46857 * 299.99686 * 12 10 9 28 28 H 1.08998 * 109.46707 * 172.25832 * 14 13 12 29 29 H 1.09000 * 109.47427 * 292.25905 * 14 13 12 30 30 H 1.09004 * 109.47050 * 185.39742 * 15 14 13 31 31 H 1.09002 * 109.47157 * 305.39852 * 15 14 13 32 32 H 0.96702 * 113.99804 * 180.02562 * 16 15 14 33 33 H 1.08997 * 109.47208 * 41.32004 * 17 13 12 34 34 H 1.09002 * 109.46860 * 281.32165 * 17 13 12 35 35 H 1.07998 * 119.99944 * 359.97127 * 19 18 17 36 36 H 1.07999 * 120.00148 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.00181 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.99596 * 179.72812 * 22 21 20 39 39 H 1.08005 * 120.00255 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5577 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1984 -5.9795 0.0007 14 6 2.9628 -6.0178 1.2546 15 6 1.9972 -5.9985 2.4412 16 8 1.2218 -7.1988 2.4439 17 6 1.5141 -7.2573 -0.2380 18 6 2.5181 -8.2892 -0.6830 19 6 3.1216 -9.1131 0.2486 20 6 4.0422 -10.0601 -0.1596 21 6 4.3586 -10.1839 -1.4995 22 6 3.7586 -9.3568 -2.4306 23 6 2.8350 -8.4124 -2.0228 24 1 -0.4850 0.8401 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.6175 -4.9204 -0.8902 27 1 0.6167 -4.9208 0.8897 28 1 3.5610 -6.9283 1.2877 29 1 3.6196 -5.1494 1.3064 30 1 2.5640 -5.9301 3.3698 31 1 1.3341 -5.1376 2.3561 32 1 0.5862 -7.2548 3.1706 33 1 0.7597 -7.1261 -1.0137 34 1 1.0346 -7.5901 0.6826 35 1 2.8740 -9.0168 1.2954 36 1 4.5141 -10.7034 0.5683 37 1 5.0781 -10.9234 -1.8184 38 1 4.0090 -9.4505 -3.4770 39 1 2.3635 -7.7688 -2.7507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050515223.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:58 Heat of formation + Delta-G solvation = -67.959205 kcal Electronic energy + Delta-G solvation = -21658.639315 eV Core-core repulsion = 18372.648130 eV Total energy + Delta-G solvation = -3285.991185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88973 -39.88918 -38.61911 -36.51911 -35.79963 -33.27717 -32.69711 -31.70273 -30.32743 -28.73674 -26.57027 -25.35190 -23.41999 -22.87582 -21.53856 -20.74408 -19.77259 -18.51227 -17.84045 -17.56953 -17.37211 -16.60246 -16.38388 -15.91736 -15.76253 -15.46673 -15.28091 -14.95394 -14.36488 -14.17827 -14.10155 -13.69746 -13.47348 -13.30235 -13.07088 -13.02423 -12.72254 -12.56520 -12.42130 -12.21942 -12.11951 -11.79345 -11.69311 -11.44676 -10.84169 -10.23392 -9.98767 -9.70684 -9.59513 -8.96316 -8.45048 -5.93581 0.53015 0.60440 1.40046 1.41931 1.52620 2.07032 2.29356 2.72544 3.16135 3.20853 3.27140 3.57637 3.95458 4.05073 4.13962 4.17851 4.25887 4.30497 4.36389 4.43247 4.52352 4.56078 4.59052 4.75612 4.83157 4.92600 5.10774 5.15914 5.26908 5.33090 5.42266 5.65961 5.69996 5.84798 5.93853 6.14300 6.22286 6.28091 6.62922 6.85523 7.14813 7.58403 8.14722 8.72125 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.003887 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.075926 B = 7201.861504 C = 7649.309072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.444 3.556 11 O -0.614 6.614 12 C 0.053 3.947 13 N -0.521 5.521 14 C 0.053 3.947 15 C 0.045 3.955 16 O -0.566 6.566 17 C 0.074 3.926 18 C -0.080 4.080 19 C -0.119 4.119 20 C -0.131 4.131 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.121 4.121 24 H 0.277 0.723 25 H 0.395 0.605 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.389 0.611 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 -18.190 2.420 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.231 3.769 11 O -0.500 6.500 12 C -0.078 4.078 13 N -0.244 5.244 14 C -0.075 4.075 15 C -0.034 4.034 16 O -0.375 6.375 17 C -0.052 4.052 18 C -0.081 4.081 19 C -0.137 4.137 20 C -0.149 4.149 21 C -0.148 4.148 22 C -0.150 4.150 23 C -0.140 4.140 24 H 0.087 0.913 25 H 0.229 0.771 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.240 0.760 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.658 -18.064 1.504 18.202 hybrid contribution -0.989 1.218 0.998 1.860 sum 0.669 -16.846 2.503 17.044 Atomic orbital electron populations 1.69665 1.06806 1.29287 1.50466 1.26000 0.96505 1.02293 0.96364 0.85019 0.77776 0.76801 0.78923 1.19867 1.19531 1.19646 1.19616 0.92674 0.83996 1.49865 0.90332 1.41914 1.09230 1.04636 1.65371 1.20724 0.88254 0.85794 0.82101 1.90458 1.15688 1.87728 1.56085 1.21830 0.93932 0.88657 1.03343 1.61677 1.25719 1.02010 1.35002 1.22343 0.96096 1.02944 0.86089 1.22828 0.94173 0.87107 0.99274 1.86413 1.56058 1.40443 1.54621 1.21573 0.93969 0.86896 1.02743 1.19900 0.98265 0.96249 0.93678 1.21271 0.97049 0.95816 0.99576 1.21428 0.98039 0.98748 0.96705 1.21436 1.00238 0.99875 0.93261 1.21403 0.96963 0.96004 1.00673 1.21240 0.98589 0.98334 0.95826 0.91344 0.77121 0.87949 0.90874 0.90064 0.90614 0.92202 0.94081 0.76023 0.90715 0.88414 0.85551 0.84220 0.83992 0.84621 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.33 -18.87 9.68 84.04 0.81 -18.05 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -29.53 5.29 -306.99 -1.62 -31.15 16 10 C 0.44 21.28 7.55 87.66 0.66 21.94 16 11 O -0.61 -34.03 13.89 -3.08 -0.04 -34.07 16 12 C 0.05 1.91 5.03 85.56 0.43 2.34 16 13 N -0.52 -17.91 4.37 -905.36 -3.96 -21.87 16 14 C 0.05 1.79 5.42 86.30 0.47 2.25 16 15 C 0.05 1.20 6.73 71.98 0.48 1.69 16 16 O -0.57 -11.89 10.37 -148.98 -1.54 -13.43 16 17 C 0.07 2.08 5.00 85.56 0.43 2.51 16 18 C -0.08 -2.23 5.07 -19.87 -0.10 -2.33 16 19 C -0.12 -2.96 8.27 22.27 0.18 -2.78 16 20 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 21 C -0.13 -2.70 10.05 22.27 0.22 -2.48 16 22 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 23 C -0.12 -3.28 9.71 22.27 0.22 -3.06 16 24 H 0.28 14.05 8.31 -92.71 -0.77 13.27 16 25 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 26 H 0.10 3.35 7.84 -2.39 -0.02 3.33 16 27 H 0.07 2.34 5.72 -2.39 -0.01 2.33 16 28 H 0.08 2.57 5.94 -2.39 -0.01 2.56 16 29 H 0.08 3.13 6.05 -2.39 -0.01 3.12 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.04 1.20 5.87 -2.39 -0.01 1.19 16 32 H 0.39 4.73 9.12 -73.96 -0.67 4.06 16 33 H 0.07 1.98 7.72 -2.39 -0.02 1.96 16 34 H 0.10 2.57 4.51 -2.35 -0.01 2.56 16 35 H 0.13 3.00 7.76 -2.91 -0.02 2.97 16 36 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 39 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -68.38 320.21 -0.45 -68.83 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.32 Total: 39.68 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 4.72 Total: -3.59 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -5.30 Total: -102.46 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -1.59 Total: -47.50 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -68.38 -0.45 -68.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050515223.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.870 kcal (2) G-P(sol) polarization free energy of solvation -68.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds