Wall clock time and date at job start Tue Mar 31 2020 00:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48494 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47067 * 300.00379 * 3 2 1 6 6 H 1.48502 * 109.46918 * 60.00294 * 3 2 1 7 7 C 1.38810 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00317 * 163.05966 * 7 2 1 9 9 N 1.36940 * 119.99637 * 343.06027 * 7 2 1 10 10 C 1.46926 * 120.62999 * 331.83932 * 9 7 2 11 11 C 1.53200 * 108.77511 * 233.63219 * 10 9 7 12 12 C 1.53039 * 109.31321 * 305.36605 * 11 10 9 13 13 C 1.50701 * 109.46081 * 181.38322 * 12 11 10 14 14 O 1.21278 * 119.99849 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99911 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99828 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47241 * 180.02562 * 16 15 13 18 18 C 1.34510 * 125.78384 * 90.00340 * 17 16 15 19 19 C 1.41389 * 106.83683 * 180.02562 * 18 17 16 20 20 C 1.34506 * 106.84210 * 359.97438 * 19 18 17 21 21 O 1.34297 * 125.79023 * 269.69567 * 17 16 15 22 22 C 1.53040 * 109.52612 * 61.37292 * 12 11 10 23 23 C 1.46930 * 120.62897 * 151.86747 * 9 7 2 24 24 H 0.96998 * 119.99996 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.58313 * 113.84641 * 10 9 7 26 26 H 1.09002 * 109.70490 * 353.48798 * 10 9 7 27 27 H 1.08995 * 109.49365 * 185.41382 * 11 10 9 28 28 H 1.09000 * 109.49815 * 65.31767 * 11 10 9 29 29 H 1.09002 * 109.46228 * 301.36449 * 12 11 10 30 30 H 0.97004 * 119.99885 * 0.02562 * 15 13 12 31 31 H 1.09004 * 109.47611 * 300.00825 * 16 15 13 32 32 H 1.09002 * 109.46922 * 60.00573 * 16 15 13 33 33 H 1.07999 * 126.58444 * 0.03457 * 18 17 16 34 34 H 1.08003 * 126.57972 * 179.97438 * 19 18 17 35 35 H 1.07996 * 125.79416 * 180.02562 * 20 19 18 36 36 H 1.08993 * 109.50158 * 58.57665 * 22 12 11 37 37 H 1.09004 * 109.50148 * 178.68097 * 22 12 11 38 38 H 1.08998 * 109.58300 * 246.15024 * 23 9 7 39 39 H 1.08993 * 109.58889 * 6.43500 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2222 -0.2731 9 7 1.3702 -2.3624 0.3445 10 6 0.2265 -2.3408 1.2665 11 6 0.4986 -3.3199 2.4129 12 6 0.8137 -4.7014 1.8346 13 6 1.0486 -5.6753 2.9603 14 8 0.9722 -5.3014 4.1115 15 7 1.3437 -6.9618 2.6878 16 6 1.5716 -7.9087 3.7822 17 6 1.8819 -9.2691 3.2130 18 6 3.1070 -9.7331 2.9075 19 6 2.9351 -11.0436 2.4054 20 6 1.6154 -11.3022 2.4346 21 8 0.9830 -10.2259 2.9301 22 6 2.0689 -4.6170 0.9632 23 6 1.8145 -3.6528 -0.1999 24 1 -0.4850 0.8400 0.0004 25 1 -0.6766 -2.6417 0.7356 26 1 0.0967 -1.3355 1.6676 27 1 -0.3817 -3.3853 3.0522 28 1 1.3484 -2.9680 2.9979 29 1 -0.0264 -5.0418 1.2291 30 1 1.4052 -7.2608 1.7670 31 1 2.4114 -7.5685 4.3882 32 1 0.6772 -7.9693 4.4023 33 1 4.0424 -9.2059 3.0236 34 1 3.7140 -11.7093 2.0639 35 1 1.1447 -12.2211 2.1179 36 1 2.9037 -4.2527 1.5619 37 1 2.3064 -5.6057 0.5704 38 1 1.0408 -4.0608 -0.8503 39 1 2.7335 -3.5125 -0.7687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058363632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:45 Heat of formation + Delta-G solvation = -5.809082 kcal Electronic energy + Delta-G solvation = -21332.493158 eV Core-core repulsion = 18049.197004 eV Total energy + Delta-G solvation = -3283.296153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.87986 -39.79258 -37.00225 -35.06035 -33.29520 -33.13866 -30.90486 -30.37415 -29.60460 -26.58130 -25.16644 -22.72188 -22.06804 -22.06219 -20.86824 -20.35545 -19.10643 -17.93389 -16.83721 -16.68854 -16.41425 -15.55372 -15.23169 -14.77192 -14.53796 -13.94504 -13.63353 -13.52270 -13.21891 -13.13777 -12.98940 -12.94876 -12.44443 -12.35655 -12.02736 -11.55607 -11.07854 -10.88907 -10.71904 -10.27605 -10.25941 -10.22550 -9.95371 -9.82442 -9.56545 -9.38215 -9.12575 -8.80775 -8.45349 -6.66242 -5.77132 -3.19861 1.30743 2.25822 2.62602 2.86308 3.39033 3.42054 3.47300 3.49415 4.29369 4.51516 4.70953 4.73774 4.98516 5.12198 5.29772 5.34996 5.43203 5.47403 5.48396 5.58517 5.63154 5.75512 5.85676 6.06437 6.15705 6.28011 6.31415 6.37490 6.61947 6.67838 6.76820 6.81077 6.82486 6.92432 7.40983 7.52832 7.69333 7.81969 8.36649 8.47035 9.22983 9.86287 10.42606 11.31475 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039534 B = 0.003280 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.077158 B = 8535.538706 C = 8784.882174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.170 3.830 11 C -0.119 4.119 12 C -0.095 4.095 13 C 0.521 3.479 14 O -0.539 6.539 15 N -0.735 5.735 16 C 0.202 3.798 17 C -0.033 4.033 18 C -0.186 4.186 19 C -0.217 4.217 20 C -0.033 4.033 21 O -0.172 6.172 22 C -0.123 4.123 23 C 0.147 3.853 24 H 0.253 0.747 25 H 0.018 0.982 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.403 0.597 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.204 0.796 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -21.288 4.005 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.044 3.956 11 C -0.159 4.159 12 C -0.117 4.117 13 C 0.309 3.691 14 O -0.415 6.415 15 N -0.390 5.390 16 C 0.078 3.922 17 C -0.083 4.083 18 C -0.207 4.207 19 C -0.237 4.237 20 C -0.101 4.101 21 O -0.067 6.067 22 C -0.162 4.162 23 C 0.020 3.980 24 H 0.063 0.937 25 H 0.037 0.963 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.238 0.762 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.221 0.779 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.972 -20.807 4.894 21.581 hybrid contribution 0.669 0.354 -0.519 0.918 sum 3.641 -20.453 4.375 21.230 Atomic orbital electron populations 1.70034 1.05267 1.25416 1.53942 1.25048 0.95296 0.98433 1.00864 0.86234 0.79377 0.83966 0.77258 1.20257 1.21764 1.21525 1.19222 0.92569 0.84808 1.41628 0.91651 1.44085 1.35940 1.01513 1.50020 1.20829 0.88534 0.98358 0.87830 1.22063 1.01249 0.92933 0.99626 1.21314 1.00265 0.95506 0.94583 1.21283 0.74670 0.81782 0.91367 1.90667 1.50553 1.77870 1.22419 1.46185 1.73802 1.09358 1.09616 1.19536 1.03331 0.80008 0.89286 1.22382 0.87772 0.91948 1.06187 1.21737 0.98142 0.96243 1.04530 1.21890 0.96779 0.97824 1.07165 1.24126 0.92437 0.91368 1.02203 1.84055 1.37609 1.21939 1.63141 1.22044 0.96042 0.99474 0.98670 1.20877 0.97862 0.86933 0.92320 0.93668 0.96347 0.89169 0.92599 0.91983 0.89179 0.76218 0.88485 0.89943 0.83101 0.83239 0.77946 0.91757 0.92966 0.96290 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.77 2.99 -172.31 -0.52 -15.28 16 10 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 11 C -0.12 -2.42 4.65 -26.61 -0.12 -2.54 16 12 C -0.10 -1.61 2.49 -91.73 -0.23 -1.83 16 13 C 0.52 8.32 7.15 -10.98 -0.08 8.24 16 14 O -0.54 -10.43 15.98 5.56 0.09 -10.34 16 15 N -0.74 -8.99 5.43 -61.47 -0.33 -9.32 16 16 C 0.20 2.21 6.20 -5.20 -0.03 2.18 16 17 C -0.03 -0.33 6.69 -35.63 -0.24 -0.57 16 18 C -0.19 -1.72 10.81 -39.70 -0.43 -2.15 16 19 C -0.22 -1.74 10.91 -39.70 -0.43 -2.17 16 20 C -0.03 -0.25 12.09 29.41 0.36 0.10 16 21 O -0.17 -1.77 10.65 5.70 0.06 -1.71 16 22 C -0.12 -2.02 5.27 -26.61 -0.14 -2.16 16 23 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 24 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 27 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 28 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 30 H 0.40 4.23 7.86 -40.82 -0.32 3.91 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.20 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.68 7.53 -51.93 -0.39 0.29 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -32.38 324.53 -7.47 -39.86 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.63 Total: 1.78 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.62 Total: -1.01 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.23 Total: -50.24 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.15 Total: -12.05 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.38 -7.47 -39.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058363632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.047 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds